Wall clock time and date at job start Tue Mar 31 2020 14:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86800 * 119.99969 * 2 1 4 4 H 1.48497 * 109.47208 * 273.02153 * 3 2 1 5 5 H 1.48502 * 109.47143 * 33.01917 * 3 2 1 6 6 H 1.48501 * 109.47104 * 153.02036 * 3 2 1 7 7 C 1.40353 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99599 * 347.25600 * 7 2 1 9 9 C 1.40173 * 120.00315 * 167.25337 * 7 2 1 10 10 C 1.39060 * 119.74438 * 152.61240 * 9 7 2 11 11 C 1.42028 * 118.74553 * 179.97438 * 10 9 7 12 12 N 1.32211 * 120.83904 * 179.97438 * 11 10 9 13 13 C 1.46499 * 120.00301 * 186.75226 * 12 11 10 14 14 C 1.53002 * 109.47041 * 245.83806 * 13 12 11 15 15 C 1.53000 * 109.47112 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.17278 * 304.28933 * 15 14 13 17 17 C 1.50925 * 109.17579 * 63.51422 * 15 14 13 18 18 N 1.44775 * 116.63362 * 192.91201 * 17 15 14 19 19 C 1.47448 * 112.76860 * 286.11754 * 18 17 15 20 20 C 1.51955 * 107.02836 * 80.32061 * 19 18 17 21 21 C 1.34292 * 127.06805 * 115.31825 * 20 19 18 22 22 C 1.41155 * 107.12809 * 179.88235 * 21 20 19 23 23 C 1.35120 * 107.44049 * 0.02562 * 22 21 20 24 24 N 1.35871 * 107.95798 * 0.02623 * 23 22 21 25 25 C 1.47832 * 126.96676 * 179.91822 * 24 23 22 26 26 C 1.46923 * 118.32977 * 0.24927 * 11 10 9 27 27 C 1.34375 * 119.37059 * 359.47965 * 26 11 10 28 28 N 1.36432 * 121.21815 * 0.53778 * 27 26 11 29 29 H 0.96998 * 119.09113 * 179.69653 * 28 27 26 30 30 H 0.96999 * 119.99729 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.63322 * 359.95096 * 10 9 7 32 32 H 1.09000 * 109.47057 * 125.83871 * 13 12 11 33 33 H 1.08996 * 109.47185 * 5.83855 * 13 12 11 34 34 H 1.08996 * 109.47171 * 300.00058 * 14 13 12 35 35 H 1.09000 * 109.47141 * 60.00117 * 14 13 12 36 36 H 1.09000 * 108.01522 * 314.70500 * 17 15 14 37 37 H 1.08999 * 108.01090 * 71.08768 * 17 15 14 38 38 H 1.00899 * 111.02373 * 51.40688 * 18 17 15 39 39 H 1.08992 * 109.94689 * 320.93833 * 19 18 17 40 40 H 1.09001 * 110.01149 * 199.73558 * 19 18 17 41 41 H 1.08008 * 126.43504 * 359.85930 * 21 20 19 42 42 H 1.07993 * 126.27869 * 180.02562 * 22 21 20 43 43 H 1.08005 * 126.02134 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.95269 * 124.83210 * 25 24 23 45 45 H 1.08997 * 109.94815 * 3.56332 * 25 24 23 46 46 H 1.08005 * 120.31437 * 179.72895 * 26 11 10 47 47 H 1.07994 * 119.39078 * 180.25771 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.4235 2.0833 -1.3981 5 1 1.4707 2.6334 0.7629 6 1 3.5679 1.4226 0.6352 7 6 2.0077 -1.2155 0.0005 8 1 1.4875 -2.1392 0.2073 9 6 3.3835 -1.2306 -0.2673 10 6 4.1782 -2.2419 0.2613 11 6 5.5695 -2.2370 -0.0240 12 7 6.3635 -3.1781 0.4575 13 6 7.8137 -3.0761 0.2771 14 6 8.2958 -4.2100 -0.6299 15 6 9.8103 -4.1031 -0.8189 16 1 10.0539 -3.1134 -1.2055 17 6 10.4910 -4.2944 0.5145 18 7 11.8938 -3.9430 0.5834 19 6 12.7619 -4.9243 -0.0929 20 6 12.7038 -4.6192 -1.5804 21 6 13.7137 -4.2022 -2.3612 22 6 13.1960 -4.0526 -3.6658 23 6 11.8873 -4.3859 -3.6229 24 7 11.5849 -4.7324 -2.3444 25 6 10.2693 -5.1661 -1.8283 26 6 6.1054 -1.1562 -0.8627 27 6 5.2711 -0.2176 -1.3407 28 7 3.9378 -0.2437 -1.0527 29 1 3.3643 0.4520 -1.4105 30 1 -0.4850 0.8401 0.0004 31 1 3.7458 -3.0163 0.8775 32 1 8.3066 -3.1515 1.2464 33 1 8.0564 -2.1169 -0.1802 34 1 8.0532 -5.1692 -0.1726 35 1 7.8029 -4.1345 -1.5992 36 1 9.9573 -3.6977 1.2542 37 1 10.3915 -5.3426 0.7963 38 1 12.0519 -3.0130 0.2254 39 1 12.3972 -5.9343 0.0939 40 1 13.7861 -4.8267 0.2669 41 1 14.7309 -4.0159 -2.0493 42 1 13.7452 -3.7308 -4.5382 43 1 11.2022 -4.3782 -4.4578 44 1 10.3642 -6.1326 -1.3332 45 1 9.5531 -5.2352 -2.6470 46 1 7.1592 -1.1188 -1.0961 47 1 5.6640 0.5746 -1.9607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163064255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:23 Heat of formation + Delta-G solvation = 97.227070 kcal Electronic energy + Delta-G solvation = -26718.021137 eV Core-core repulsion = 23094.414251 eV Total energy + Delta-G solvation = -3623.606887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.66151 -39.02607 -37.91289 -35.43812 -34.33104 -33.70181 -31.94294 -31.06519 -29.97193 -29.13920 -27.13862 -26.15021 -25.91651 -23.80433 -22.77111 -21.78167 -20.73276 -20.61721 -19.98004 -19.04497 -18.29770 -17.43927 -17.32178 -16.18268 -15.67249 -15.38136 -15.22086 -14.95496 -14.64205 -13.94604 -13.82582 -13.70038 -13.61021 -13.39814 -13.25927 -13.10586 -13.00065 -12.54071 -12.44592 -12.29505 -11.88139 -11.83394 -11.60545 -11.47157 -11.32430 -11.18279 -11.02942 -10.86497 -10.64077 -10.39123 -10.33265 -9.77100 -9.56589 -8.85324 -8.69500 -8.49039 -8.06514 -7.73904 -7.34078 -6.26903 -4.84559 2.13181 2.36502 2.41177 2.65810 2.78158 2.79959 2.90035 2.91914 3.45101 3.95208 4.15808 4.28782 4.43659 4.47085 4.61004 4.79395 4.98228 5.06223 5.09166 5.13176 5.22151 5.27726 5.32556 5.44879 5.51391 5.56458 5.60637 5.77411 5.92014 5.96071 6.00454 6.14649 6.19989 6.22362 6.27292 6.34472 6.45683 6.57735 6.67744 6.73168 6.84019 6.90492 7.09475 7.13181 7.21647 7.25063 7.48531 7.66123 7.87492 7.98368 8.01547 8.47461 8.57079 9.49499 9.69711 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.002224 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.039548 B =12589.283892 C =12930.793305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.079 3.921 3 Si 0.881 3.119 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.241 1.241 7 C -0.450 4.450 8 H 0.114 0.886 9 C 0.297 3.703 10 C -0.342 4.342 11 C 0.279 3.721 12 N -0.661 5.661 13 C 0.060 3.940 14 C -0.100 4.100 15 C -0.132 4.132 16 H 0.073 0.927 17 C 0.054 3.946 18 N -0.679 5.679 19 C 0.128 3.872 20 C -0.029 4.029 21 C -0.192 4.192 22 C -0.209 4.209 23 C -0.012 4.012 24 N -0.439 5.439 25 C 0.107 3.893 26 C -0.281 4.281 27 C 0.116 3.884 28 N -0.632 5.632 29 H 0.390 0.610 30 H 0.292 0.708 31 H 0.120 0.880 32 H 0.053 0.947 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.346 0.654 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.159 0.841 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.121 0.879 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.527 -2.237 -5.417 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.706 3.294 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.164 1.164 7 C -0.483 4.483 8 H 0.132 0.868 9 C 0.191 3.809 10 C -0.371 4.371 11 C 0.115 3.885 12 N -0.386 5.386 13 C -0.071 4.071 14 C -0.139 4.139 15 C -0.153 4.153 16 H 0.092 0.908 17 C -0.076 4.076 18 N -0.307 5.307 19 C -0.002 4.002 20 C -0.142 4.142 21 C -0.217 4.217 22 C -0.234 4.234 23 C -0.143 4.143 24 N -0.114 5.114 25 C -0.014 4.014 26 C -0.310 4.310 27 C -0.011 4.011 28 N -0.248 5.248 29 H 0.228 0.772 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.165 0.835 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.176 0.824 44 H 0.103 0.897 45 H 0.113 0.887 46 H 0.139 0.861 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.121 -3.447 -4.123 17.945 hybrid contribution 0.191 2.109 -1.943 2.874 sum 17.312 -1.338 -6.066 18.393 Atomic orbital electron populations 1.69495 1.07735 1.30692 1.33081 1.26204 0.95143 1.01224 0.91750 0.86811 0.82103 0.80992 0.79445 1.19223 1.19790 1.16399 1.19351 0.90107 0.96701 1.42094 0.86793 1.17833 0.92116 0.84836 0.86136 1.20186 0.90389 1.07621 1.18926 1.20304 0.93989 0.86881 0.87328 1.73392 1.00593 1.27861 1.36761 1.21848 0.93455 0.94967 0.96814 1.21576 0.90613 1.01188 1.00562 1.21975 0.98104 0.98704 0.96558 0.90821 1.21429 0.87684 1.02556 0.95915 1.60192 1.05166 1.06149 1.59188 1.21102 0.99047 0.96226 0.83832 1.21502 0.87115 1.09873 0.95712 1.20577 0.98383 1.09295 0.93457 1.20973 0.94272 1.10252 0.97872 1.21806 0.97524 1.08104 0.86833 1.44413 1.08800 1.50554 1.07669 1.22558 0.81888 0.98385 0.98527 1.22411 0.98817 1.00801 1.09011 1.21214 0.83972 0.98432 0.97474 1.42456 1.07104 1.27925 1.47362 0.77202 0.89724 0.86227 0.92920 0.95746 0.91505 0.92467 0.89446 0.91524 0.83500 0.90420 0.88403 0.84945 0.85012 0.82406 0.89671 0.88716 0.86125 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.42 13.92 55.57 0.77 -17.65 16 2 C 0.08 1.79 5.48 -17.28 -0.09 1.69 16 3 Si 0.88 16.60 24.59 -169.99 -4.18 12.42 16 4 H -0.27 -4.49 6.86 56.52 0.39 -4.10 16 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.24 -4.74 6.81 56.52 0.38 -4.36 16 7 C -0.45 -10.84 9.60 -38.06 -0.37 -11.20 16 8 H 0.11 2.93 8.06 -52.48 -0.42 2.51 16 9 C 0.30 6.82 5.89 -84.16 -0.50 6.33 16 10 C -0.34 -8.24 9.83 -37.83 -0.37 -8.61 16 11 C 0.28 6.34 6.80 -82.74 -0.56 5.78 16 12 N -0.66 -14.77 10.62 -57.24 -0.61 -15.37 16 13 C 0.06 1.07 5.96 -4.04 -0.02 1.05 16 14 C -0.10 -1.45 4.95 -26.73 -0.13 -1.58 16 15 C -0.13 -1.53 2.16 -91.34 -0.20 -1.73 16 16 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 17 C 0.05 0.61 5.08 -6.01 -0.03 0.58 16 18 N -0.68 -7.16 6.70 -116.69 -0.78 -7.94 16 19 C 0.13 1.22 6.60 -4.05 -0.03 1.19 16 20 C -0.03 -0.32 5.97 -81.54 -0.49 -0.80 16 21 C -0.19 -2.15 10.81 -39.87 -0.43 -2.58 16 22 C -0.21 -2.34 10.88 -39.58 -0.43 -2.77 16 23 C -0.01 -0.13 11.51 -16.87 -0.19 -0.33 16 24 N -0.44 -4.95 2.78 -111.01 -0.31 -5.26 16 25 C 0.11 1.12 5.88 -2.99 -0.02 1.10 16 26 C -0.28 -5.45 9.34 -37.43 -0.35 -5.80 16 27 C 0.12 2.05 11.15 -16.87 -0.19 1.86 16 28 N -0.63 -12.60 3.66 -10.84 -0.04 -12.64 16 29 H 0.39 7.16 4.38 -40.82 -0.18 6.98 16 30 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 31 H 0.12 2.98 8.06 -52.49 -0.42 2.56 16 32 H 0.05 0.92 6.19 -51.93 -0.32 0.60 16 33 H 0.02 0.43 5.32 -51.93 -0.28 0.16 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 36 H 0.09 1.11 5.75 -51.93 -0.30 0.81 16 37 H 0.07 0.74 7.55 -51.93 -0.39 0.34 16 38 H 0.35 3.72 8.55 -39.29 -0.34 3.38 16 39 H 0.08 0.72 7.76 -51.93 -0.40 0.32 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 44 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16 45 H 0.09 0.93 7.91 -51.93 -0.41 0.52 16 46 H 0.12 2.11 6.00 -52.48 -0.31 1.79 16 47 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -27.02 367.25 -10.74 -37.76 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -6.73 Total: 18.96 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -4.40 Total: -15.81 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.96 Total: -58.86 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -4.18 Total: 12.42 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.02 -10.74 -37.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163064255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.986 kcal (2) G-P(sol) polarization free energy of solvation -27.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds