Wall clock time and date at job start Tue Mar 31 2020 14:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86800 * 119.99969 * 2 1 4 4 H 1.48497 * 109.47208 * 273.02153 * 3 2 1 5 5 H 1.48502 * 109.47143 * 33.01917 * 3 2 1 6 6 H 1.48501 * 109.47104 * 153.02036 * 3 2 1 7 7 C 1.40353 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99599 * 347.25600 * 7 2 1 9 9 C 1.40173 * 120.00315 * 167.25337 * 7 2 1 10 10 C 1.39060 * 119.74438 * 152.61240 * 9 7 2 11 11 C 1.42028 * 118.74553 * 179.97438 * 10 9 7 12 12 N 1.32211 * 120.83904 * 179.97438 * 11 10 9 13 13 C 1.46499 * 120.00301 * 186.75226 * 12 11 10 14 14 C 1.53002 * 109.47041 * 245.83806 * 13 12 11 15 15 C 1.53000 * 109.47112 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.17278 * 304.28933 * 15 14 13 17 17 C 1.50925 * 109.17579 * 63.51422 * 15 14 13 18 18 N 1.44775 * 116.63362 * 192.91201 * 17 15 14 19 19 C 1.47448 * 112.76860 * 286.11754 * 18 17 15 20 20 C 1.51955 * 107.02836 * 80.32061 * 19 18 17 21 21 C 1.34292 * 127.06805 * 115.31825 * 20 19 18 22 22 C 1.41155 * 107.12809 * 179.88235 * 21 20 19 23 23 C 1.35120 * 107.44049 * 0.02562 * 22 21 20 24 24 N 1.35871 * 107.95798 * 0.02623 * 23 22 21 25 25 C 1.47832 * 126.96676 * 179.91822 * 24 23 22 26 26 C 1.46923 * 118.32977 * 0.24927 * 11 10 9 27 27 C 1.34375 * 119.37059 * 359.47965 * 26 11 10 28 28 N 1.36432 * 121.21815 * 0.53778 * 27 26 11 29 29 H 0.96998 * 119.09113 * 179.69653 * 28 27 26 30 30 H 0.96999 * 119.99729 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.63322 * 359.95096 * 10 9 7 32 32 H 1.09000 * 109.47057 * 125.83871 * 13 12 11 33 33 H 1.08996 * 109.47185 * 5.83855 * 13 12 11 34 34 H 1.08996 * 109.47171 * 300.00058 * 14 13 12 35 35 H 1.09000 * 109.47141 * 60.00117 * 14 13 12 36 36 H 1.09000 * 108.01522 * 314.70500 * 17 15 14 37 37 H 1.08999 * 108.01090 * 71.08768 * 17 15 14 38 38 H 1.00899 * 111.02373 * 51.40688 * 18 17 15 39 39 H 1.08992 * 109.94689 * 320.93833 * 19 18 17 40 40 H 1.09001 * 110.01149 * 199.73558 * 19 18 17 41 41 H 1.08008 * 126.43504 * 359.85930 * 21 20 19 42 42 H 1.07993 * 126.27869 * 180.02562 * 22 21 20 43 43 H 1.08005 * 126.02134 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.95269 * 124.83210 * 25 24 23 45 45 H 1.08997 * 109.94815 * 3.56332 * 25 24 23 46 46 H 1.08005 * 120.31437 * 179.72895 * 26 11 10 47 47 H 1.07994 * 119.39078 * 180.25771 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 2.4235 2.0833 -1.3981 5 1 1.4707 2.6334 0.7629 6 1 3.5679 1.4226 0.6352 7 6 2.0077 -1.2155 0.0005 8 1 1.4875 -2.1392 0.2073 9 6 3.3835 -1.2306 -0.2673 10 6 4.1782 -2.2419 0.2613 11 6 5.5695 -2.2370 -0.0240 12 7 6.3635 -3.1781 0.4575 13 6 7.8137 -3.0761 0.2771 14 6 8.2958 -4.2100 -0.6299 15 6 9.8103 -4.1031 -0.8189 16 1 10.0539 -3.1134 -1.2055 17 6 10.4910 -4.2944 0.5145 18 7 11.8938 -3.9430 0.5834 19 6 12.7619 -4.9243 -0.0929 20 6 12.7038 -4.6192 -1.5804 21 6 13.7137 -4.2022 -2.3612 22 6 13.1960 -4.0526 -3.6658 23 6 11.8873 -4.3859 -3.6229 24 7 11.5849 -4.7324 -2.3444 25 6 10.2693 -5.1661 -1.8283 26 6 6.1054 -1.1562 -0.8627 27 6 5.2711 -0.2176 -1.3407 28 7 3.9378 -0.2437 -1.0527 29 1 3.3643 0.4520 -1.4105 30 1 -0.4850 0.8401 0.0004 31 1 3.7458 -3.0163 0.8775 32 1 8.3066 -3.1515 1.2464 33 1 8.0564 -2.1169 -0.1802 34 1 8.0532 -5.1692 -0.1726 35 1 7.8029 -4.1345 -1.5992 36 1 9.9573 -3.6977 1.2542 37 1 10.3915 -5.3426 0.7963 38 1 12.0519 -3.0130 0.2254 39 1 12.3972 -5.9343 0.0939 40 1 13.7861 -4.8267 0.2669 41 1 14.7309 -4.0159 -2.0493 42 1 13.7452 -3.7308 -4.5382 43 1 11.2022 -4.3782 -4.4578 44 1 10.3642 -6.1326 -1.3332 45 1 9.5531 -5.2352 -2.6470 46 1 7.1592 -1.1188 -1.0961 47 1 5.6640 0.5746 -1.9607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163064255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:22 Heat of formation + Delta-G solvation = 80.111530 kcal Electronic energy + Delta-G solvation = -26718.763323 eV Core-core repulsion = 23094.414251 eV Total energy + Delta-G solvation = -3624.349072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.48167 -40.64384 -38.91417 -36.81138 -35.67667 -35.13204 -33.05384 -32.73124 -31.08801 -30.25103 -28.56182 -27.46186 -26.98432 -24.79739 -23.97152 -23.34563 -21.97068 -21.51258 -21.30665 -19.98656 -19.84600 -19.04250 -18.24108 -17.30836 -16.94454 -16.79589 -16.55785 -16.05103 -15.72686 -15.34482 -15.04628 -15.00284 -14.77212 -14.62775 -14.46659 -14.31486 -13.97558 -13.75474 -13.43918 -13.20340 -13.09551 -13.02746 -12.99970 -12.79648 -12.58319 -12.51470 -12.33150 -12.16659 -11.97205 -11.81289 -11.70053 -11.38062 -11.11228 -10.14482 -9.71354 -9.54331 -9.35380 -9.07227 -8.89017 -7.92699 -6.71477 0.78050 0.89598 1.10525 1.30719 1.31784 1.39589 1.90601 1.96075 2.07986 2.38451 2.61596 3.29948 3.34188 3.54318 3.55166 3.74228 3.88778 3.99541 4.13833 4.15921 4.21440 4.30398 4.36633 4.42394 4.50736 4.62100 4.63430 4.71958 4.72759 4.77070 4.82113 4.84246 4.86525 4.96055 5.04722 5.10141 5.29226 5.34535 5.35997 5.40939 5.52359 5.78308 5.85143 5.99933 6.07263 6.08769 6.17861 6.27025 6.32010 6.38498 6.44160 6.75491 6.83946 7.85059 8.01615 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.002224 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.039548 B =12589.283892 C =12930.793305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.043 3.957 3 Si 0.941 3.059 4 H -0.220 1.220 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.481 4.481 8 H 0.073 0.927 9 C 0.303 3.697 10 C -0.379 4.379 11 C 0.263 3.737 12 N -0.692 5.692 13 C 0.060 3.940 14 C -0.086 4.086 15 C -0.113 4.113 16 H 0.064 0.936 17 C 0.060 3.940 18 N -0.679 5.679 19 C 0.131 3.869 20 C -0.037 4.037 21 C -0.204 4.204 22 C -0.222 4.222 23 C -0.024 4.024 24 N -0.445 5.445 25 C 0.110 3.890 26 C -0.298 4.298 27 C 0.132 3.868 28 N -0.630 5.630 29 H 0.400 0.600 30 H 0.304 0.696 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.030 0.970 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.346 0.654 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.175 0.825 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.143 0.857 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.953 -0.067 -7.079 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.144 1.144 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.514 4.514 8 H 0.091 0.909 9 C 0.196 3.804 10 C -0.408 4.408 11 C 0.097 3.903 12 N -0.417 5.417 13 C -0.071 4.071 14 C -0.125 4.125 15 C -0.135 4.135 16 H 0.083 0.917 17 C -0.071 4.071 18 N -0.306 5.306 19 C 0.001 3.999 20 C -0.151 4.151 21 C -0.230 4.230 22 C -0.247 4.247 23 C -0.155 4.155 24 N -0.120 5.120 25 C -0.011 4.011 26 C -0.327 4.327 27 C 0.006 3.994 28 N -0.247 5.247 29 H 0.240 0.760 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.165 0.835 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.192 0.808 44 H 0.113 0.887 45 H 0.120 0.880 46 H 0.161 0.839 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 19.549 -1.291 -5.805 20.433 hybrid contribution -0.565 1.311 -1.373 1.981 sum 18.984 0.020 -7.179 20.296 Atomic orbital electron populations 1.69531 1.09213 1.32503 1.33215 1.27014 0.95864 1.04206 0.90500 0.85905 0.79898 0.76193 0.81943 1.14367 1.19103 1.17518 1.19260 0.91104 0.96418 1.44603 0.90861 1.17533 0.91380 0.85451 0.85997 1.20144 0.91952 1.08231 1.20439 1.20416 0.93302 0.88311 0.88229 1.73259 1.03201 1.28472 1.36746 1.21923 0.90924 0.96494 0.97752 1.21365 0.92565 0.99500 0.99093 1.21735 0.95790 0.98757 0.97184 0.91738 1.21323 0.88139 1.02433 0.95161 1.60194 1.04649 1.06415 1.59353 1.21192 0.99668 0.96043 0.82959 1.21767 0.87133 1.09847 0.96337 1.20871 0.99158 1.09300 0.93646 1.21268 0.94609 1.10325 0.98463 1.22190 0.98046 1.07958 0.87275 1.44489 1.08914 1.50742 1.07872 1.22525 0.81964 0.98134 0.98465 1.22475 1.00263 1.00510 1.09436 1.22009 0.82324 0.98867 0.96213 1.42393 1.08371 1.27246 1.46686 0.75992 0.88492 0.89403 0.92759 0.95224 0.92035 0.93329 0.90975 0.91154 0.83550 0.90014 0.86833 0.83695 0.83787 0.80802 0.88715 0.87972 0.83939 0.78608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.02 13.92 21.89 0.30 -38.71 16 2 C 0.04 1.98 5.48 85.39 0.47 2.45 16 3 Si 0.94 32.26 24.59 68.60 1.69 33.95 16 4 H -0.22 -6.00 6.86 99.48 0.68 -5.32 16 5 H -0.27 -8.86 7.11 99.48 0.71 -8.15 16 6 H -0.25 -9.08 6.81 99.48 0.68 -8.40 16 7 C -0.48 -24.40 9.60 23.25 0.22 -24.17 16 8 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 9 C 0.30 14.28 5.89 38.88 0.23 14.51 16 10 C -0.38 -19.21 9.83 23.41 0.23 -18.98 16 11 C 0.26 12.14 6.80 42.30 0.29 12.42 16 12 N -0.69 -31.61 10.62 -335.00 -3.56 -35.16 16 13 C 0.06 2.10 5.96 86.38 0.51 2.62 16 14 C -0.09 -2.43 4.95 30.59 0.15 -2.28 16 15 C -0.11 -2.47 2.16 -11.26 -0.02 -2.49 16 16 H 0.06 1.57 8.09 -2.39 -0.02 1.55 16 17 C 0.06 1.28 5.08 86.03 0.44 1.71 16 18 N -0.68 -13.18 6.70 -523.11 -3.51 -16.68 16 19 C 0.13 2.23 6.60 85.85 0.57 2.79 16 20 C -0.04 -0.76 5.97 41.42 0.25 -0.51 16 21 C -0.20 -4.19 10.81 22.08 0.24 -3.95 16 22 C -0.22 -4.56 10.88 22.27 0.24 -4.32 16 23 C -0.02 -0.49 11.51 83.35 0.96 0.47 16 24 N -0.44 -9.18 2.78 -505.12 -1.40 -10.59 16 25 C 0.11 2.09 5.88 86.33 0.51 2.60 16 26 C -0.30 -10.96 9.34 23.66 0.22 -10.73 16 27 C 0.13 4.16 11.15 83.09 0.93 5.09 16 28 N -0.63 -23.68 3.66 -188.19 -0.69 -24.37 16 29 H 0.40 13.25 4.38 -92.71 -0.41 12.84 16 30 H 0.30 12.64 8.29 -92.71 -0.77 11.87 16 31 H 0.09 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.05 1.89 6.19 -2.39 -0.01 1.88 16 33 H 0.03 1.01 5.32 -2.39 -0.01 1.00 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.46 8.04 -2.39 -0.02 1.44 16 36 H 0.07 1.77 5.75 -2.39 -0.01 1.76 16 37 H 0.07 1.46 7.55 -2.39 -0.02 1.44 16 38 H 0.35 6.85 8.55 -89.69 -0.77 6.09 16 39 H 0.08 1.34 7.76 -2.39 -0.02 1.32 16 40 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 43 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 44 H 0.09 1.64 7.88 -2.39 -0.02 1.62 16 45 H 0.10 1.81 7.91 -2.39 -0.02 1.79 16 46 H 0.14 4.55 6.00 -2.91 -0.02 4.53 16 47 H 0.20 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -62.42 367.25 -0.96 -63.38 By element: Atomic # 1 Polarization: 51.18 SS G_CDS: -0.23 Total: 50.96 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 6.43 Total: -22.78 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -8.85 Total: -125.51 kcal Atomic # 14 Polarization: 32.26 SS G_CDS: 1.69 Total: 33.95 kcal Total: -62.42 -0.96 -63.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163064255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.492 kcal (2) G-P(sol) polarization free energy of solvation -62.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds