Wall clock time and date at job start Tue Mar 31 2020 14:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48496 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47134 * 300.00268 * 3 2 1 6 6 H 1.48503 * 109.47166 * 60.00042 * 3 2 1 7 7 C 1.40344 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99857 * 198.41589 * 7 2 1 9 9 C 1.40175 * 120.00293 * 18.41712 * 7 2 1 10 10 C 1.39072 * 119.74543 * 201.53155 * 9 7 2 11 11 C 1.42024 * 118.74508 * 179.97438 * 10 9 7 12 12 N 1.32207 * 120.83437 * 179.97438 * 11 10 9 13 13 C 1.46494 * 120.00556 * 185.94573 * 12 11 10 14 14 C 1.52999 * 109.47539 * 118.88717 * 13 12 11 15 15 C 1.53002 * 109.46915 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.17423 * 55.71983 * 15 14 13 17 17 C 1.50917 * 109.18029 * 296.47401 * 15 14 13 18 18 N 1.44756 * 116.64293 * 167.11709 * 17 15 14 19 19 C 1.47461 * 112.79321 * 73.87347 * 18 17 15 20 20 C 1.51958 * 107.02529 * 279.69278 * 19 18 17 21 21 C 1.34296 * 127.06876 * 244.66710 * 20 19 18 22 22 C 1.41148 * 107.12124 * 180.09523 * 21 20 19 23 23 C 1.35113 * 107.45026 * 359.97438 * 22 21 20 24 24 N 1.35877 * 107.95194 * 359.97438 * 23 22 21 25 25 C 1.47841 * 126.96224 * 180.09199 * 24 23 22 26 26 C 1.46918 * 118.33417 * 0.25546 * 11 10 9 27 27 C 1.34377 * 119.36774 * 359.47551 * 26 11 10 28 28 N 1.36434 * 121.21966 * 0.53541 * 27 26 11 29 29 H 0.96998 * 119.08995 * 179.69592 * 28 27 26 30 30 H 0.97003 * 119.99836 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.62436 * 359.97438 * 10 9 7 32 32 H 1.09008 * 109.46788 * 358.89093 * 13 12 11 33 33 H 1.08994 * 109.47496 * 238.89478 * 13 12 11 34 34 H 1.09001 * 109.47144 * 60.00267 * 14 13 12 35 35 H 1.09002 * 109.46953 * 300.00324 * 14 13 12 36 36 H 1.08998 * 108.01940 * 288.92714 * 17 15 14 37 37 H 1.09004 * 108.01003 * 45.35696 * 17 15 14 38 38 H 1.00899 * 111.00342 * 199.16300 * 18 17 15 39 39 H 1.09010 * 109.93937 * 39.07097 * 19 18 17 40 40 H 1.09002 * 109.94426 * 160.22135 * 19 18 17 41 41 H 1.08000 * 126.43444 * 0.13803 * 21 20 19 42 42 H 1.08006 * 126.27775 * 180.24169 * 22 21 20 43 43 H 1.08003 * 126.02584 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.94581 * 235.12465 * 25 24 23 45 45 H 1.08999 * 109.94576 * 356.29294 * 25 24 23 46 46 H 1.07998 * 120.31756 * 179.71920 * 26 11 10 47 47 H 1.07994 * 119.39037 * 180.25673 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.6999 1.3464 -0.0006 5 1 1.8811 2.3965 -1.2125 6 1 1.8812 2.3965 1.2125 7 6 2.0076 -1.2154 -0.0005 8 1 3.0461 -1.2395 0.2949 9 6 1.3606 -2.3981 -0.3846 10 6 1.8686 -3.6266 0.0240 11 6 1.1959 -4.8114 -0.3769 12 7 1.6432 -6.0009 -0.0124 13 6 1.0142 -7.2137 -0.5413 14 6 2.0468 -8.0213 -1.3302 15 6 1.3896 -9.2876 -1.8830 16 1 0.5197 -9.0090 -2.4779 17 6 0.9446 -10.1578 -0.7331 18 7 0.0528 -11.2518 -1.0542 19 6 0.7369 -12.3646 -1.7384 20 6 0.8697 -11.9735 -3.2007 21 6 0.2941 -12.5742 -4.2549 22 6 0.7024 -11.8704 -5.4083 23 6 1.5120 -10.8667 -5.0050 24 7 1.6141 -10.9290 -3.6515 25 6 2.3948 -10.0287 -2.7765 26 6 -0.0059 -4.6823 -1.2120 27 6 -0.4375 -3.4585 -1.5611 28 7 0.2259 -2.3346 -1.1635 29 1 -0.1103 -1.4669 -1.4370 30 1 -0.4850 0.8401 0.0004 31 1 2.7580 -3.6785 0.6346 32 1 0.1893 -6.9381 -1.1985 33 1 0.6353 -7.8161 0.2842 34 1 2.8717 -8.2969 -0.6731 35 1 2.4256 -7.4188 -2.1558 36 1 1.8346 -10.5754 -0.2623 37 1 0.4467 -9.5212 -0.0017 38 1 -0.4319 -11.5768 -0.2310 39 1 1.7245 -12.5177 -1.3032 40 1 0.1459 -13.2761 -1.6481 41 1 -0.3590 -13.4338 -4.2255 42 1 0.4162 -12.0908 -6.4261 43 1 1.9933 -10.1425 -5.6456 44 1 3.0802 -10.6109 -2.1606 45 1 2.9538 -9.3149 -3.3815 46 1 -0.5398 -5.5624 -1.5388 47 1 -1.3233 -3.3631 -2.1715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163064256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:27 Heat of formation + Delta-G solvation = 90.290639 kcal Electronic energy + Delta-G solvation = -26545.140153 eV Core-core repulsion = 22921.232480 eV Total energy + Delta-G solvation = -3623.907673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41257 -38.61027 -37.72464 -35.31941 -34.35237 -33.48480 -31.70712 -30.64873 -29.83213 -28.92608 -26.98976 -26.09733 -25.79105 -23.78474 -22.58932 -21.53585 -20.51471 -20.29284 -19.73970 -18.83536 -18.03844 -17.13698 -16.66047 -16.36941 -15.50182 -15.42162 -14.95249 -14.78719 -14.48561 -14.43951 -13.81721 -13.65812 -13.15280 -13.12929 -12.93593 -12.86574 -12.73592 -12.28506 -12.17656 -12.06105 -11.88913 -11.62624 -11.58522 -11.27715 -11.17974 -11.10023 -10.82930 -10.75798 -10.62982 -10.35668 -10.12025 -9.73517 -9.33572 -8.63322 -8.48811 -8.27944 -7.96557 -7.54077 -7.33363 -6.00039 -4.80362 2.33375 2.54342 2.71885 2.85590 2.92413 2.97801 3.07398 3.12852 3.61478 4.07578 4.23914 4.55609 4.61531 4.67838 4.76581 4.91131 5.08733 5.17324 5.21690 5.28582 5.34053 5.42923 5.47907 5.58200 5.65614 5.73254 5.75397 5.86128 6.03347 6.13261 6.23192 6.33760 6.38276 6.39733 6.48329 6.66204 6.72274 6.76332 6.82645 6.86830 6.90801 7.08659 7.23040 7.34593 7.37627 7.45112 7.63756 7.73866 7.95186 8.23291 8.26303 8.77723 8.90187 9.65687 9.72269 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026660 B = 0.002067 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.022562 B =13543.323142 C =13811.842290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.076 3.924 3 Si 0.923 3.077 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.465 4.465 8 H 0.104 0.896 9 C 0.330 3.670 10 C -0.361 4.361 11 C 0.285 3.715 12 N -0.677 5.677 13 C 0.063 3.937 14 C -0.099 4.099 15 C -0.097 4.097 16 H 0.083 0.917 17 C 0.066 3.934 18 N -0.695 5.695 19 C 0.128 3.872 20 C 0.029 3.971 21 C -0.197 4.197 22 C -0.208 4.208 23 C -0.016 4.016 24 N -0.437 5.437 25 C 0.108 3.892 26 C -0.303 4.303 27 C 0.126 3.874 28 N -0.603 5.603 29 H 0.413 0.587 30 H 0.292 0.708 31 H 0.112 0.888 32 H 0.026 0.974 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.023 0.977 37 H 0.083 0.917 38 H 0.351 0.649 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.158 0.842 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.117 0.883 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -12.924 -6.126 14.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.142 4.142 3 Si 0.746 3.254 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.498 4.498 8 H 0.122 0.878 9 C 0.221 3.779 10 C -0.390 4.390 11 C 0.123 3.877 12 N -0.403 5.403 13 C -0.068 4.068 14 C -0.138 4.138 15 C -0.117 4.117 16 H 0.101 0.899 17 C -0.063 4.063 18 N -0.327 5.327 19 C -0.001 4.001 20 C -0.084 4.084 21 C -0.223 4.223 22 C -0.233 4.233 23 C -0.146 4.146 24 N -0.112 5.112 25 C -0.013 4.013 26 C -0.333 4.333 27 C -0.004 4.004 28 N -0.214 5.214 29 H 0.253 0.747 30 H 0.103 0.897 31 H 0.130 0.870 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.101 0.899 38 H 0.170 0.830 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.175 0.825 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.135 0.865 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.044 -12.806 -5.925 14.110 hybrid contribution -0.336 0.759 -0.043 0.831 sum -0.380 -12.047 -5.968 13.450 Atomic orbital electron populations 1.69356 1.07865 1.30826 1.35815 1.26221 0.94921 1.02484 0.90605 0.85990 0.81171 0.79327 0.78906 1.17794 1.19397 1.19516 1.19552 0.99861 0.89837 1.40507 0.87822 1.17636 0.81527 0.94380 0.84339 1.20187 1.09556 0.88010 1.21248 1.20222 0.87867 0.93037 0.86608 1.73334 1.36473 0.95816 1.34681 1.21734 0.94472 0.94715 0.95892 1.21554 0.99276 0.93277 0.99717 1.21297 0.98392 0.95550 0.96446 0.89858 1.21157 0.95044 0.92873 0.97233 1.58886 1.32364 1.09447 1.31972 1.20806 0.97467 0.93445 0.88375 1.20312 1.00237 0.92669 0.95220 1.20453 1.06359 1.03709 0.91732 1.20902 1.04588 0.99336 0.98448 1.21739 1.06358 1.03413 0.83127 1.44329 1.37010 1.23745 1.06105 1.22504 0.93679 0.92272 0.92842 1.22308 1.04064 0.95414 1.11560 1.21249 0.95246 0.87554 0.96304 1.42075 1.25463 1.08434 1.45411 0.74657 0.89662 0.86959 0.95569 0.93990 0.91873 0.92169 0.95925 0.89881 0.82963 0.93905 0.88912 0.85197 0.85144 0.82501 0.90141 0.88692 0.86535 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.49 11.12 55.57 0.62 -16.88 16 2 C 0.08 1.63 5.16 -17.29 -0.09 1.54 16 3 Si 0.92 16.13 29.60 -169.99 -5.03 11.10 16 4 H -0.25 -4.49 7.11 56.52 0.40 -4.09 16 5 H -0.27 -4.58 7.11 56.52 0.40 -4.18 16 6 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 7 C -0.46 -10.89 9.02 -38.06 -0.34 -11.23 16 8 H 0.10 2.37 7.92 -52.49 -0.42 1.96 16 9 C 0.33 8.00 6.38 -84.16 -0.54 7.46 16 10 C -0.36 -9.16 9.83 -37.82 -0.37 -9.53 16 11 C 0.29 6.96 6.80 -82.74 -0.56 6.40 16 12 N -0.68 -16.14 10.62 -57.24 -0.61 -16.75 16 13 C 0.06 1.22 6.00 -4.05 -0.02 1.20 16 14 C -0.10 -1.58 4.95 -26.73 -0.13 -1.71 16 15 C -0.10 -1.30 2.18 -91.37 -0.20 -1.50 16 16 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 17 C 0.07 0.82 5.07 -6.02 -0.03 0.79 16 18 N -0.69 -7.80 6.51 -116.69 -0.76 -8.56 16 19 C 0.13 1.33 6.53 -4.05 -0.03 1.31 16 20 C 0.03 0.37 6.22 -81.54 -0.51 -0.14 16 21 C -0.20 -2.50 10.81 -39.87 -0.43 -2.93 16 22 C -0.21 -2.60 10.88 -39.59 -0.43 -3.03 16 23 C -0.02 -0.20 11.51 -16.87 -0.19 -0.39 16 24 N -0.44 -5.64 2.78 -111.03 -0.31 -5.94 16 25 C 0.11 1.28 5.87 -3.02 -0.02 1.26 16 26 C -0.30 -6.50 9.39 -37.43 -0.35 -6.85 16 27 C 0.13 2.49 11.15 -16.87 -0.19 2.30 16 28 N -0.60 -13.08 4.90 -10.83 -0.05 -13.13 16 29 H 0.41 8.55 6.30 -40.82 -0.26 8.29 16 30 H 0.29 5.64 8.29 -40.82 -0.34 5.30 16 31 H 0.11 2.91 8.06 -52.49 -0.42 2.48 16 32 H 0.03 0.52 5.22 -51.92 -0.27 0.24 16 33 H 0.04 0.79 6.19 -51.93 -0.32 0.47 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.01 8.04 -51.93 -0.42 0.60 16 36 H 0.02 0.27 7.55 -51.93 -0.39 -0.12 16 37 H 0.08 1.11 5.75 -51.93 -0.30 0.81 16 38 H 0.35 3.16 8.89 -39.29 -0.35 2.81 16 39 H 0.04 0.43 7.76 -51.92 -0.40 0.02 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 42 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 43 H 0.16 1.60 8.06 -52.48 -0.42 1.17 16 44 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 45 H 0.09 1.04 7.91 -51.93 -0.41 0.63 16 46 H 0.12 2.30 5.89 -52.49 -0.31 2.00 16 47 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -28.02 372.86 -11.73 -39.74 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: -6.77 Total: 19.86 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -4.44 Total: -15.06 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -1.11 Total: -61.26 kcal Atomic # 14 Polarization: 16.13 SS G_CDS: -5.03 Total: 11.10 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.02 -11.73 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163064256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.035 kcal (2) G-P(sol) polarization free energy of solvation -28.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds