Wall clock time and date at job start Tue Mar 31 2020 14:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30588 * 1 3 3 Si 1.86801 * 120.00047 * 2 1 4 4 H 1.48496 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47134 * 300.00268 * 3 2 1 6 6 H 1.48503 * 109.47166 * 60.00042 * 3 2 1 7 7 C 1.40344 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99857 * 198.41589 * 7 2 1 9 9 C 1.40175 * 120.00293 * 18.41712 * 7 2 1 10 10 C 1.39072 * 119.74543 * 201.53155 * 9 7 2 11 11 C 1.42024 * 118.74508 * 179.97438 * 10 9 7 12 12 N 1.32207 * 120.83437 * 179.97438 * 11 10 9 13 13 C 1.46494 * 120.00556 * 185.94573 * 12 11 10 14 14 C 1.52999 * 109.47539 * 118.88717 * 13 12 11 15 15 C 1.53002 * 109.46915 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.17423 * 55.71983 * 15 14 13 17 17 C 1.50917 * 109.18029 * 296.47401 * 15 14 13 18 18 N 1.44756 * 116.64293 * 167.11709 * 17 15 14 19 19 C 1.47461 * 112.79321 * 73.87347 * 18 17 15 20 20 C 1.51958 * 107.02529 * 279.69278 * 19 18 17 21 21 C 1.34296 * 127.06876 * 244.66710 * 20 19 18 22 22 C 1.41148 * 107.12124 * 180.09523 * 21 20 19 23 23 C 1.35113 * 107.45026 * 359.97438 * 22 21 20 24 24 N 1.35877 * 107.95194 * 359.97438 * 23 22 21 25 25 C 1.47841 * 126.96224 * 180.09199 * 24 23 22 26 26 C 1.46918 * 118.33417 * 0.25546 * 11 10 9 27 27 C 1.34377 * 119.36774 * 359.47551 * 26 11 10 28 28 N 1.36434 * 121.21966 * 0.53541 * 27 26 11 29 29 H 0.96998 * 119.08995 * 179.69592 * 28 27 26 30 30 H 0.97003 * 119.99836 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.62436 * 359.97438 * 10 9 7 32 32 H 1.09008 * 109.46788 * 358.89093 * 13 12 11 33 33 H 1.08994 * 109.47496 * 238.89478 * 13 12 11 34 34 H 1.09001 * 109.47144 * 60.00267 * 14 13 12 35 35 H 1.09002 * 109.46953 * 300.00324 * 14 13 12 36 36 H 1.08998 * 108.01940 * 288.92714 * 17 15 14 37 37 H 1.09004 * 108.01003 * 45.35696 * 17 15 14 38 38 H 1.00899 * 111.00342 * 199.16300 * 18 17 15 39 39 H 1.09010 * 109.93937 * 39.07097 * 19 18 17 40 40 H 1.09002 * 109.94426 * 160.22135 * 19 18 17 41 41 H 1.08000 * 126.43444 * 0.13803 * 21 20 19 42 42 H 1.08006 * 126.27775 * 180.24169 * 22 21 20 43 43 H 1.08003 * 126.02584 * 179.97438 * 23 22 21 44 44 H 1.08997 * 109.94581 * 235.12465 * 25 24 23 45 45 H 1.08999 * 109.94576 * 356.29294 * 25 24 23 46 46 H 1.07998 * 120.31756 * 179.71920 * 26 11 10 47 47 H 1.07994 * 119.39037 * 180.25673 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6177 0.0000 4 1 3.6999 1.3464 -0.0006 5 1 1.8811 2.3965 -1.2125 6 1 1.8812 2.3965 1.2125 7 6 2.0076 -1.2154 -0.0005 8 1 3.0461 -1.2395 0.2949 9 6 1.3606 -2.3981 -0.3846 10 6 1.8686 -3.6266 0.0240 11 6 1.1959 -4.8114 -0.3769 12 7 1.6432 -6.0009 -0.0124 13 6 1.0142 -7.2137 -0.5413 14 6 2.0468 -8.0213 -1.3302 15 6 1.3896 -9.2876 -1.8830 16 1 0.5197 -9.0090 -2.4779 17 6 0.9446 -10.1578 -0.7331 18 7 0.0528 -11.2518 -1.0542 19 6 0.7369 -12.3646 -1.7384 20 6 0.8697 -11.9735 -3.2007 21 6 0.2941 -12.5742 -4.2549 22 6 0.7024 -11.8704 -5.4083 23 6 1.5120 -10.8667 -5.0050 24 7 1.6141 -10.9290 -3.6515 25 6 2.3948 -10.0287 -2.7765 26 6 -0.0059 -4.6823 -1.2120 27 6 -0.4375 -3.4585 -1.5611 28 7 0.2259 -2.3346 -1.1635 29 1 -0.1103 -1.4669 -1.4370 30 1 -0.4850 0.8401 0.0004 31 1 2.7580 -3.6785 0.6346 32 1 0.1893 -6.9381 -1.1985 33 1 0.6353 -7.8161 0.2842 34 1 2.8717 -8.2969 -0.6731 35 1 2.4256 -7.4188 -2.1558 36 1 1.8346 -10.5754 -0.2623 37 1 0.4467 -9.5212 -0.0017 38 1 -0.4319 -11.5768 -0.2310 39 1 1.7245 -12.5177 -1.3032 40 1 0.1459 -13.2761 -1.6481 41 1 -0.3590 -13.4338 -4.2255 42 1 0.4162 -12.0908 -6.4261 43 1 1.9933 -10.1425 -5.6456 44 1 3.0802 -10.6109 -2.1606 45 1 2.9538 -9.3149 -3.3815 46 1 -0.5398 -5.5624 -1.5388 47 1 -1.3233 -3.3631 -2.1715 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163064256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:26 Heat of formation + Delta-G solvation = 73.498038 kcal Electronic energy + Delta-G solvation = -26545.868335 eV Core-core repulsion = 22921.232480 eV Total energy + Delta-G solvation = -3624.635855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.33870 -40.32216 -38.82522 -36.76262 -35.70538 -34.97653 -32.94621 -32.35123 -30.92341 -30.25501 -28.54021 -27.37060 -27.01602 -24.83724 -23.95401 -23.20194 -21.80887 -21.43541 -21.03776 -19.85423 -19.68949 -18.39896 -18.08401 -17.43637 -16.98319 -16.63891 -16.48483 -16.04552 -15.66171 -15.49126 -15.36009 -14.87330 -14.55727 -14.46008 -14.30972 -14.04982 -13.86238 -13.52123 -13.37780 -13.20118 -13.08170 -12.94187 -12.88718 -12.71762 -12.55596 -12.45811 -12.24946 -12.15734 -11.86797 -11.83305 -11.60866 -11.34182 -10.99716 -10.01939 -9.52418 -9.43692 -9.28449 -9.00056 -8.89622 -7.75456 -6.64488 0.92970 1.06442 1.39899 1.41692 1.55832 1.60656 2.05257 2.14365 2.15503 2.54134 2.90336 3.17211 3.44243 3.61471 3.69922 3.83763 3.93711 4.10051 4.12754 4.21732 4.28698 4.30552 4.36053 4.47279 4.56593 4.59677 4.68060 4.73476 4.76722 4.81617 4.87162 4.93281 5.00321 5.04473 5.05352 5.17542 5.31695 5.37790 5.42370 5.47587 5.63830 5.82296 5.98485 6.00096 6.09425 6.18351 6.41750 6.44013 6.46553 6.49795 6.54177 6.99854 7.18495 7.96403 8.01688 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026660 B = 0.002067 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.022562 B =13543.323142 C =13811.842290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.049 3.951 3 Si 0.995 3.005 4 H -0.261 1.261 5 H -0.254 1.254 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.319 3.681 10 C -0.405 4.405 11 C 0.266 3.734 12 N -0.709 5.709 13 C 0.064 3.936 14 C -0.084 4.084 15 C -0.081 4.081 16 H 0.061 0.939 17 C 0.071 3.929 18 N -0.702 5.702 19 C 0.130 3.870 20 C 0.012 3.988 21 C -0.212 4.212 22 C -0.221 4.221 23 C -0.031 4.031 24 N -0.445 5.445 25 C 0.111 3.889 26 C -0.322 4.322 27 C 0.138 3.862 28 N -0.603 5.603 29 H 0.418 0.582 30 H 0.307 0.693 31 H 0.086 0.914 32 H 0.023 0.977 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.364 0.636 39 H 0.050 0.950 40 H 0.115 0.885 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.174 0.826 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.132 0.868 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 -12.519 -7.067 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.169 4.169 3 Si 0.815 3.185 4 H -0.185 1.185 5 H -0.178 1.178 6 H -0.190 1.190 7 C -0.523 4.523 8 H 0.114 0.886 9 C 0.210 3.790 10 C -0.434 4.434 11 C 0.103 3.897 12 N -0.435 5.435 13 C -0.067 4.067 14 C -0.123 4.123 15 C -0.102 4.102 16 H 0.080 0.920 17 C -0.059 4.059 18 N -0.336 5.336 19 C 0.002 3.998 20 C -0.101 4.101 21 C -0.237 4.237 22 C -0.245 4.245 23 C -0.161 4.161 24 N -0.120 5.120 25 C -0.010 4.010 26 C -0.351 4.351 27 C 0.009 3.991 28 N -0.215 5.215 29 H 0.259 0.741 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.185 0.815 39 H 0.068 0.932 40 H 0.133 0.867 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.191 0.809 44 H 0.112 0.888 45 H 0.121 0.879 46 H 0.149 0.851 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.991 -12.434 -6.866 14.238 hybrid contribution -0.117 0.667 0.275 0.731 sum -1.107 -11.767 -6.591 13.533 Atomic orbital electron populations 1.69330 1.08800 1.32704 1.33892 1.26954 0.95673 1.04883 0.89391 0.84933 0.79265 0.74888 0.79457 1.18484 1.17775 1.18994 1.19751 0.99947 0.90958 1.41692 0.88601 1.17754 0.82428 0.94200 0.84621 1.20138 1.10175 0.89602 1.23484 1.20390 0.89075 0.92788 0.87426 1.73216 1.37785 0.97041 1.35483 1.21806 0.95174 0.93521 0.96204 1.21345 0.98358 0.93864 0.98761 1.21064 0.97727 0.94700 0.96661 0.92036 1.21025 0.95513 0.93095 0.96268 1.58807 1.32328 1.09620 1.32832 1.20914 0.98265 0.93761 0.86904 1.20789 1.00146 0.92659 0.96472 1.20780 1.06716 1.04339 0.91896 1.21220 1.04593 0.99411 0.99297 1.22151 1.06618 1.03960 0.83353 1.44439 1.37277 1.23927 1.06347 1.22475 0.93221 0.92469 0.92830 1.22364 1.03638 0.96912 1.12219 1.21905 0.95773 0.86278 0.95137 1.42085 1.24977 1.09327 1.45063 0.74082 0.88127 0.89535 0.95907 0.93634 0.91934 0.93327 0.95070 0.91174 0.81468 0.93201 0.86653 0.83798 0.83738 0.80864 0.88840 0.87913 0.85065 0.80083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -34.13 11.12 21.89 0.24 -33.89 16 2 C 0.05 2.06 5.16 85.39 0.44 2.50 16 3 Si 0.99 31.78 29.60 68.60 2.03 33.81 16 4 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 5 H -0.25 -7.50 7.11 99.48 0.71 -6.80 16 6 H -0.27 -8.28 7.11 99.48 0.71 -7.57 16 7 C -0.49 -23.52 9.02 23.25 0.21 -23.31 16 8 H 0.10 4.59 7.92 -2.91 -0.02 4.57 16 9 C 0.32 15.94 6.38 38.88 0.25 16.18 16 10 C -0.40 -21.74 9.83 23.41 0.23 -21.51 16 11 C 0.27 13.52 6.80 42.30 0.29 13.81 16 12 N -0.71 -35.22 10.62 -335.02 -3.56 -38.78 16 13 C 0.06 2.53 6.00 86.38 0.52 3.05 16 14 C -0.08 -2.73 4.95 30.59 0.15 -2.57 16 15 C -0.08 -2.15 2.18 -11.28 -0.02 -2.18 16 16 H 0.06 1.92 8.09 -2.39 -0.02 1.90 16 17 C 0.07 1.69 5.07 86.03 0.44 2.13 16 18 N -0.70 -14.75 6.51 -523.10 -3.41 -18.15 16 19 C 0.13 2.45 6.53 85.85 0.56 3.01 16 20 C 0.01 0.30 6.22 41.42 0.26 0.55 16 21 C -0.21 -5.09 10.81 22.08 0.24 -4.85 16 22 C -0.22 -5.25 10.88 22.26 0.24 -5.01 16 23 C -0.03 -0.73 11.51 83.35 0.96 0.23 16 24 N -0.44 -10.97 2.78 -505.20 -1.40 -12.37 16 25 C 0.11 2.52 5.87 86.31 0.51 3.03 16 26 C -0.32 -13.83 9.39 23.66 0.22 -13.61 16 27 C 0.14 5.27 11.15 83.09 0.93 6.20 16 28 N -0.60 -25.93 4.90 -188.18 -0.92 -26.85 16 29 H 0.42 16.80 6.30 -92.71 -0.58 16.21 16 30 H 0.31 11.12 8.29 -92.71 -0.77 10.35 16 31 H 0.09 4.89 8.06 -2.91 -0.02 4.86 16 32 H 0.02 0.91 5.22 -2.38 -0.01 0.90 16 33 H 0.05 1.76 6.19 -2.39 -0.01 1.75 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.67 8.04 -2.39 -0.02 1.65 16 36 H 0.03 0.70 7.55 -2.39 -0.02 0.68 16 37 H 0.07 1.85 5.75 -2.38 -0.01 1.84 16 38 H 0.36 5.96 8.89 -89.69 -0.80 5.16 16 39 H 0.05 0.88 7.76 -2.38 -0.02 0.86 16 40 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 43 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 44 H 0.09 1.89 7.87 -2.39 -0.02 1.87 16 45 H 0.10 2.15 7.91 -2.39 -0.02 2.14 16 46 H 0.13 5.15 5.89 -2.91 -0.02 5.13 16 47 H 0.18 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -62.44 372.86 -0.98 -63.42 By element: Atomic # 1 Polarization: 55.56 SS G_CDS: -0.38 Total: 55.18 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 6.41 Total: -22.37 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -9.05 Total: -130.04 kcal Atomic # 14 Polarization: 31.78 SS G_CDS: 2.03 Total: 33.81 kcal Total: -62.44 -0.98 -63.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163064256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.919 kcal (2) G-P(sol) polarization free energy of solvation -62.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds