Wall clock time and date at job start Tue Mar 31 2020 14:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86803 * 120.00207 * 2 1 4 4 H 1.48496 * 109.47019 * 270.00195 * 3 2 1 5 5 H 1.48503 * 109.47125 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47228 * 149.99965 * 3 2 1 7 7 C 1.40030 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99915 * 163.16722 * 7 2 1 9 9 C 1.41552 * 119.99975 * 343.17375 * 7 2 1 10 10 C 1.41186 * 120.99408 * 156.12085 * 9 7 2 11 11 C 1.36553 * 119.14604 * 180.02562 * 10 9 7 12 12 N 1.32092 * 121.27000 * 359.71745 * 11 10 9 13 13 C 1.32531 * 122.21317 * 0.57759 * 12 11 10 14 14 N 1.39084 * 119.65818 * 179.70080 * 13 12 11 15 15 C 1.46854 * 110.99791 * 359.73104 * 14 13 12 16 16 C 1.53034 * 109.52161 * 185.83920 * 15 14 13 17 17 C 1.53123 * 109.28006 * 300.81664 * 16 15 14 18 18 C 1.50700 * 109.52301 * 177.55987 * 17 16 15 19 19 C 1.34200 * 120.67317 * 120.12984 * 18 17 16 20 20 C 1.46985 * 119.37383 * 179.75965 * 19 18 17 21 21 C 1.33915 * 120.01492 * 15.95489 * 20 19 18 22 22 N 1.38997 * 120.08212 * 180.31060 * 21 20 19 23 23 C 1.50852 * 119.84955 * 0.29174 * 21 20 19 24 24 N 1.39484 * 120.68580 * 300.10481 * 18 17 16 25 25 C 1.53124 * 109.20920 * 57.62593 * 17 16 15 26 26 C 1.46846 * 111.00088 * 123.93802 * 14 13 12 27 27 C 1.38747 * 120.68980 * 359.42760 * 13 12 11 28 28 H 0.97003 * 119.99772 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.42299 * 0.04217 * 10 9 7 30 30 H 1.08001 * 119.36264 * 180.02562 * 11 10 9 31 31 H 1.08992 * 109.46370 * 65.82248 * 15 14 13 32 32 H 1.08995 * 109.45966 * 305.85493 * 15 14 13 33 33 H 1.08999 * 109.50144 * 180.87776 * 16 15 14 34 34 H 1.09002 * 109.54067 * 60.77594 * 16 15 14 35 35 H 1.08999 * 109.52124 * 297.68900 * 17 16 15 36 36 H 1.08000 * 120.30889 * 0.03582 * 19 18 17 37 37 H 1.08004 * 119.99519 * 195.93222 * 20 19 18 38 38 H 0.97007 * 119.99958 * 0.02562 * 22 21 20 39 39 H 0.97003 * 120.00603 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.56032 * 91.73962 * 23 21 20 41 41 H 1.09000 * 109.56162 * 212.05825 * 23 21 20 42 42 H 0.97001 * 120.67049 * 328.43576 * 24 18 17 43 43 H 1.08996 * 109.50700 * 62.31907 * 25 17 16 44 44 H 1.08998 * 109.50023 * 182.43614 * 25 17 16 45 45 H 1.09000 * 109.46169 * 294.17689 * 26 14 13 46 46 H 1.08999 * 109.46345 * 54.15555 * 26 14 13 47 47 H 1.07997 * 120.66978 * 180.25477 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4401 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0529 -1.2329 -0.2703 9 6 1.3453 -2.4122 0.3559 10 6 1.8202 -3.6646 -0.0904 11 6 1.1516 -4.7979 0.2747 12 7 0.0760 -4.7432 1.0396 13 6 -0.4179 -3.5961 1.4830 14 7 -1.5574 -3.5998 2.2805 15 6 -2.0438 -4.9685 2.4967 16 6 -3.3739 -4.9251 3.2523 17 6 -3.1697 -4.2180 4.5951 18 6 -4.4885 -4.1190 5.3177 19 6 -4.6523 -4.6841 6.5239 20 6 -5.9491 -4.5654 7.2055 21 6 -7.0356 -4.1912 6.5179 22 7 -8.2613 -4.0723 7.1624 23 6 -6.9262 -3.8986 5.0421 24 7 -5.5635 -3.4378 4.7470 25 6 -2.6164 -2.8123 4.3451 26 6 -1.3090 -2.9168 3.5565 27 6 0.1931 -2.3917 1.1646 28 1 -0.4850 0.8401 -0.0004 29 1 2.7010 -3.7255 -0.7123 30 1 1.5121 -5.7579 -0.0644 31 1 -1.3120 -5.5259 3.0814 32 1 -2.1888 -5.4587 1.5341 33 1 -3.7268 -5.9416 3.4264 34 1 -4.1107 -4.3800 2.6624 35 1 -2.4636 -4.7849 5.2017 36 1 -3.8375 -5.2172 6.9912 37 1 -6.0258 -4.7803 8.2612 38 1 -8.3304 -4.2600 8.1117 39 1 -9.0477 -3.8015 6.6632 40 1 -7.1358 -4.8049 4.4738 41 1 -7.6410 -3.1220 4.7700 42 1 -5.4141 -2.6749 4.1668 43 1 -3.3404 -2.2326 3.7725 44 1 -2.4285 -2.3202 5.2994 45 1 -0.5806 -3.4839 4.1362 46 1 -0.9205 -1.9169 3.3635 47 1 -0.2073 -1.4575 1.5295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163133079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:58 Heat of formation + Delta-G solvation = 65.010987 kcal Electronic energy + Delta-G solvation = -27204.599514 eV Core-core repulsion = 23579.595634 eV Total energy + Delta-G solvation = -3625.003881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.77010 -38.84734 -37.36789 -35.25281 -34.08294 -32.93855 -31.31943 -30.86146 -30.22435 -29.17901 -27.64649 -25.98401 -25.06830 -23.73613 -22.99788 -21.20633 -21.16862 -20.35656 -19.29216 -18.03027 -17.61836 -16.93952 -16.50460 -15.83489 -15.37717 -15.03341 -14.70566 -14.52117 -14.32716 -14.24134 -14.06092 -13.56462 -13.46780 -13.33973 -12.98836 -12.72562 -12.59576 -12.14978 -11.95712 -11.71656 -11.56265 -11.41907 -11.33304 -11.17695 -10.91449 -10.86836 -10.68436 -10.55700 -10.27365 -10.16498 -9.88759 -9.72444 -9.40276 -8.74535 -8.50803 -8.00746 -7.94556 -6.89900 -6.77269 -6.65487 -4.57595 1.80319 2.74651 2.85723 3.02637 3.06739 3.21807 3.24979 3.45716 3.86345 3.96790 4.42487 4.66079 4.71686 4.88876 4.98481 5.07443 5.18378 5.43575 5.52811 5.60462 5.66787 5.72756 5.79236 5.89814 5.93511 5.98675 6.02961 6.14044 6.19750 6.32127 6.35275 6.39585 6.49609 6.54751 6.61769 6.69644 6.82440 6.85316 6.95009 7.11445 7.21080 7.40923 7.48038 7.53681 7.63170 7.68714 7.78331 7.93595 7.94299 8.27236 8.61655 8.77740 8.81005 9.62125 10.09131 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.002718 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.982558 B =10298.884277 C =11377.230079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.137 3.863 10 C -0.284 4.284 11 C 0.116 3.884 12 N -0.604 5.604 13 C 0.291 3.709 14 N -0.472 5.472 15 C 0.074 3.926 16 C -0.106 4.106 17 C -0.047 4.047 18 C 0.142 3.858 19 C -0.205 4.205 20 C -0.212 4.212 21 C 0.106 3.894 22 N -0.881 5.881 23 C 0.179 3.821 24 N -0.745 5.745 25 C -0.106 4.106 26 C 0.064 3.936 27 C -0.223 4.223 28 H 0.282 0.718 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.394 0.606 39 H 0.390 0.610 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.400 0.600 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.034 0.966 46 H 0.084 0.916 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.918 -3.763 11.203 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.129 3.871 10 C -0.308 4.308 11 C -0.038 4.038 12 N -0.324 5.324 13 C 0.065 3.935 14 N -0.191 5.191 15 C -0.053 4.053 16 C -0.144 4.144 17 C -0.067 4.067 18 C 0.041 3.959 19 C -0.231 4.231 20 C -0.240 4.240 21 C 0.001 3.999 22 N -0.422 5.422 23 C 0.052 3.948 24 N -0.380 5.380 25 C -0.144 4.144 26 C -0.063 4.063 27 C -0.248 4.248 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.222 0.778 39 H 0.217 0.783 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.236 0.764 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.102 0.898 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.014 -4.217 11.173 18.413 hybrid contribution 0.991 1.471 0.077 1.775 sum -13.023 -2.746 11.251 17.428 Atomic orbital electron populations 1.69806 1.07596 1.29436 1.33531 1.25968 0.94755 1.01426 0.92081 0.86311 0.80676 0.80446 0.79341 1.19383 1.19957 1.18376 1.19573 0.97810 0.90829 1.40413 0.90152 1.17697 0.90333 0.92179 0.86913 1.21559 1.05316 0.94080 1.09874 1.21325 0.91341 0.96664 0.94429 1.67180 1.16444 1.28290 1.20529 1.19404 0.88803 0.90178 0.95072 1.59242 1.28036 1.17455 1.14394 1.21780 0.94237 0.88912 1.00399 1.21663 0.98180 0.99965 0.94601 1.20358 0.92610 0.97394 0.96332 1.20085 0.88880 0.95054 0.91929 1.20979 0.97385 1.10672 0.94053 1.20559 0.92110 1.12889 0.98466 1.20330 0.86560 0.98698 0.94271 1.42173 1.07939 1.80196 1.11864 1.19948 0.84669 0.99524 0.90638 1.44198 1.02377 1.35838 1.55539 1.21609 0.97288 0.95948 0.99533 1.22132 0.95929 0.99838 0.88427 1.21642 1.01054 0.96277 1.05801 0.90653 0.88328 0.86442 0.94390 0.90076 0.91805 0.91277 0.89948 0.86720 0.87987 0.77817 0.78302 0.92431 0.90572 0.76399 0.91281 0.91346 0.94790 0.89792 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.67 10.92 55.55 0.61 -19.07 16 2 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 3 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.83 9.12 -37.65 -0.34 -12.18 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.14 3.64 5.60 -106.56 -0.60 3.05 16 10 C -0.28 -6.98 9.85 -39.07 -0.38 -7.36 16 11 C 0.12 2.69 11.10 -18.05 -0.20 2.49 16 12 N -0.60 -14.50 8.66 -12.82 -0.11 -14.61 16 13 C 0.29 6.98 6.41 -154.97 -0.99 5.98 16 14 N -0.47 -9.53 4.68 -173.29 -0.81 -10.34 16 15 C 0.07 1.32 4.65 -3.83 -0.02 1.30 16 16 C -0.11 -1.50 5.32 -26.65 -0.14 -1.64 16 17 C -0.05 -0.62 2.54 -91.64 -0.23 -0.85 16 18 C 0.14 1.76 5.32 -80.53 -0.43 1.33 16 19 C -0.20 -2.59 9.86 -37.46 -0.37 -2.96 16 20 C -0.21 -2.52 9.97 -37.56 -0.37 -2.89 16 21 C 0.11 1.08 6.90 -80.78 -0.56 0.52 16 22 N -0.88 -6.32 9.06 33.98 0.31 -6.02 16 23 C 0.18 1.70 7.21 -4.93 -0.04 1.66 16 24 N -0.74 -8.22 5.66 -57.15 -0.32 -8.55 16 25 C -0.11 -1.47 5.31 -26.64 -0.14 -1.61 16 26 C 0.06 1.12 5.24 -3.83 -0.02 1.10 16 27 C -0.22 -5.77 7.87 -38.43 -0.30 -6.07 16 28 H 0.28 6.47 8.29 -40.82 -0.34 6.14 16 29 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.04 0.70 8.11 -51.93 -0.42 0.28 16 32 H 0.08 1.57 7.71 -51.93 -0.40 1.17 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 35 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 36 H 0.11 1.38 7.94 -52.49 -0.42 0.96 16 37 H 0.10 1.13 8.06 -52.48 -0.42 0.70 16 38 H 0.39 2.40 8.81 -40.82 -0.36 2.04 16 39 H 0.39 2.01 8.89 -40.82 -0.36 1.65 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.40 4.20 8.04 -40.82 -0.33 3.87 16 43 H 0.07 0.96 7.29 -51.93 -0.38 0.58 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 1.58 6.67 -51.93 -0.35 1.24 16 47 H 0.13 3.41 5.29 -52.49 -0.28 3.13 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -29.13 373.11 -12.02 -41.15 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.05 Total: 15.07 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -5.23 Total: -16.32 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.33 Total: -58.59 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.13 -12.02 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163133079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.157 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds