Wall clock time and date at job start Tue Mar 31 2020 14:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86803 * 120.00207 * 2 1 4 4 H 1.48496 * 109.47019 * 270.00195 * 3 2 1 5 5 H 1.48503 * 109.47125 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47228 * 149.99965 * 3 2 1 7 7 C 1.40030 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99915 * 163.16722 * 7 2 1 9 9 C 1.41552 * 119.99975 * 343.17375 * 7 2 1 10 10 C 1.41186 * 120.99408 * 156.12085 * 9 7 2 11 11 C 1.36553 * 119.14604 * 180.02562 * 10 9 7 12 12 N 1.32092 * 121.27000 * 359.71745 * 11 10 9 13 13 C 1.32531 * 122.21317 * 0.57759 * 12 11 10 14 14 N 1.39084 * 119.65818 * 179.70080 * 13 12 11 15 15 C 1.46854 * 110.99791 * 359.73104 * 14 13 12 16 16 C 1.53034 * 109.52161 * 185.83920 * 15 14 13 17 17 C 1.53123 * 109.28006 * 300.81664 * 16 15 14 18 18 C 1.50700 * 109.52301 * 177.55987 * 17 16 15 19 19 C 1.34200 * 120.67317 * 120.12984 * 18 17 16 20 20 C 1.46985 * 119.37383 * 179.75965 * 19 18 17 21 21 C 1.33915 * 120.01492 * 15.95489 * 20 19 18 22 22 N 1.38997 * 120.08212 * 180.31060 * 21 20 19 23 23 C 1.50852 * 119.84955 * 0.29174 * 21 20 19 24 24 N 1.39484 * 120.68580 * 300.10481 * 18 17 16 25 25 C 1.53124 * 109.20920 * 57.62593 * 17 16 15 26 26 C 1.46846 * 111.00088 * 123.93802 * 14 13 12 27 27 C 1.38747 * 120.68980 * 359.42760 * 13 12 11 28 28 H 0.97003 * 119.99772 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.42299 * 0.04217 * 10 9 7 30 30 H 1.08001 * 119.36264 * 180.02562 * 11 10 9 31 31 H 1.08992 * 109.46370 * 65.82248 * 15 14 13 32 32 H 1.08995 * 109.45966 * 305.85493 * 15 14 13 33 33 H 1.08999 * 109.50144 * 180.87776 * 16 15 14 34 34 H 1.09002 * 109.54067 * 60.77594 * 16 15 14 35 35 H 1.08999 * 109.52124 * 297.68900 * 17 16 15 36 36 H 1.08000 * 120.30889 * 0.03582 * 19 18 17 37 37 H 1.08004 * 119.99519 * 195.93222 * 20 19 18 38 38 H 0.97007 * 119.99958 * 0.02562 * 22 21 20 39 39 H 0.97003 * 120.00603 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.56032 * 91.73962 * 23 21 20 41 41 H 1.09000 * 109.56162 * 212.05825 * 23 21 20 42 42 H 0.97001 * 120.67049 * 328.43576 * 24 18 17 43 43 H 1.08996 * 109.50700 * 62.31907 * 25 17 16 44 44 H 1.08998 * 109.50023 * 182.43614 * 25 17 16 45 45 H 1.09000 * 109.46169 * 294.17689 * 26 14 13 46 46 H 1.08999 * 109.46345 * 54.15555 * 26 14 13 47 47 H 1.07997 * 120.66978 * 180.25477 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4000 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4401 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0529 -1.2329 -0.2703 9 6 1.3453 -2.4122 0.3559 10 6 1.8202 -3.6646 -0.0904 11 6 1.1516 -4.7979 0.2747 12 7 0.0760 -4.7432 1.0396 13 6 -0.4179 -3.5961 1.4830 14 7 -1.5574 -3.5998 2.2805 15 6 -2.0438 -4.9685 2.4967 16 6 -3.3739 -4.9251 3.2523 17 6 -3.1697 -4.2180 4.5951 18 6 -4.4885 -4.1190 5.3177 19 6 -4.6523 -4.6841 6.5239 20 6 -5.9491 -4.5654 7.2055 21 6 -7.0356 -4.1912 6.5179 22 7 -8.2613 -4.0723 7.1624 23 6 -6.9262 -3.8986 5.0421 24 7 -5.5635 -3.4378 4.7470 25 6 -2.6164 -2.8123 4.3451 26 6 -1.3090 -2.9168 3.5565 27 6 0.1931 -2.3917 1.1646 28 1 -0.4850 0.8401 -0.0004 29 1 2.7010 -3.7255 -0.7123 30 1 1.5121 -5.7579 -0.0644 31 1 -1.3120 -5.5259 3.0814 32 1 -2.1888 -5.4587 1.5341 33 1 -3.7268 -5.9416 3.4264 34 1 -4.1107 -4.3800 2.6624 35 1 -2.4636 -4.7849 5.2017 36 1 -3.8375 -5.2172 6.9912 37 1 -6.0258 -4.7803 8.2612 38 1 -8.3304 -4.2600 8.1117 39 1 -9.0477 -3.8015 6.6632 40 1 -7.1358 -4.8049 4.4738 41 1 -7.6410 -3.1220 4.7700 42 1 -5.4141 -2.6749 4.1668 43 1 -3.3404 -2.2326 3.7725 44 1 -2.4285 -2.3202 5.2994 45 1 -0.5806 -3.4839 4.1362 46 1 -0.9205 -1.9169 3.3635 47 1 -0.2073 -1.4575 1.5295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163133079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:57 Heat of formation + Delta-G solvation = 47.576400 kcal Electronic energy + Delta-G solvation = -27205.355535 eV Core-core repulsion = 23579.595634 eV Total energy + Delta-G solvation = -3625.759901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.20045 -40.05887 -38.77100 -36.36343 -35.81954 -34.14876 -32.59246 -32.19142 -31.74268 -30.51579 -28.91719 -27.88471 -26.00791 -24.96567 -24.49028 -22.90875 -22.49037 -21.71312 -20.57333 -19.42471 -18.80676 -17.82310 -17.57565 -17.33804 -16.99170 -16.39188 -16.07440 -15.93660 -15.75635 -15.35676 -15.15272 -14.95786 -14.75781 -14.63208 -14.39527 -14.23245 -13.94195 -13.84968 -13.18727 -13.10576 -13.01447 -12.88102 -12.63166 -12.38745 -12.17708 -12.09098 -11.97589 -11.89178 -11.80310 -11.72915 -11.27687 -11.22375 -10.75935 -10.45319 -9.93365 -9.86226 -9.28945 -8.71976 -8.59315 -7.46795 -6.54722 0.90530 0.93977 1.01621 1.38800 1.51047 1.57180 2.18743 2.33084 2.68875 2.71861 2.92015 3.27553 3.68872 3.78548 3.85020 3.93610 4.01718 4.11495 4.31437 4.33225 4.41492 4.48162 4.60786 4.71218 4.71910 4.81809 4.83952 4.89584 4.94851 4.96816 4.99353 5.05611 5.11873 5.18278 5.23058 5.26485 5.36651 5.42940 5.55864 5.58568 5.70401 5.86313 5.97835 6.00472 6.12833 6.37057 6.61908 6.72944 6.76905 6.84317 6.89266 7.10517 7.14773 7.73217 8.26638 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.017729 B = 0.002718 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.982558 B =10298.884277 C =11377.230079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.038 3.962 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.487 4.487 8 H 0.082 0.918 9 C 0.107 3.893 10 C -0.302 4.302 11 C 0.115 3.885 12 N -0.611 5.611 13 C 0.290 3.710 14 N -0.479 5.479 15 C 0.080 3.920 16 C -0.093 4.093 17 C -0.038 4.038 18 C 0.133 3.867 19 C -0.208 4.208 20 C -0.252 4.252 21 C 0.122 3.878 22 N -0.869 5.869 23 C 0.173 3.827 24 N -0.747 5.747 25 C -0.094 4.094 26 C 0.067 3.933 27 C -0.248 4.248 28 H 0.291 0.709 29 H 0.111 0.889 30 H 0.153 0.847 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.401 0.599 39 H 0.403 0.597 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.402 0.598 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.030 0.970 46 H 0.064 0.936 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.400 -3.302 12.030 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.517 4.517 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.326 4.326 11 C -0.038 4.038 12 N -0.332 5.332 13 C 0.064 3.936 14 N -0.197 5.197 15 C -0.047 4.047 16 C -0.130 4.130 17 C -0.057 4.057 18 C 0.031 3.969 19 C -0.234 4.234 20 C -0.280 4.280 21 C 0.015 3.985 22 N -0.410 5.410 23 C 0.047 3.953 24 N -0.382 5.382 25 C -0.132 4.132 26 C -0.060 4.060 27 C -0.273 4.273 28 H 0.102 0.898 29 H 0.129 0.871 30 H 0.170 0.830 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.230 0.770 39 H 0.232 0.768 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.238 0.762 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.048 0.952 46 H 0.083 0.917 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.545 -3.770 12.016 20.006 hybrid contribution 1.335 1.252 -0.173 1.839 sum -14.210 -2.518 11.843 18.669 Atomic orbital electron populations 1.69861 1.09115 1.30912 1.33423 1.26852 0.95506 1.04671 0.90932 0.85168 0.79119 0.75587 0.79655 1.18533 1.18839 1.18166 1.19866 0.98148 0.91884 1.41798 0.89983 1.18137 0.91059 0.93430 0.87493 1.21767 1.06190 0.93981 1.10679 1.21877 0.90720 0.97839 0.93391 1.67335 1.16847 1.28079 1.20954 1.19727 0.89239 0.89701 0.94912 1.59239 1.26247 1.18954 1.15289 1.21777 0.95839 0.87243 0.99877 1.21548 0.95732 1.01101 0.94668 1.20219 0.93390 0.96400 0.95713 1.19849 0.88774 0.96181 0.92080 1.21120 0.97935 1.10251 0.94135 1.20606 0.92503 1.15973 0.98911 1.20510 0.87022 0.96308 0.94639 1.42197 1.07469 1.78907 1.12388 1.20132 0.84462 1.00548 0.90141 1.44222 1.02624 1.35763 1.55573 1.21534 0.95134 0.96968 0.99525 1.22141 0.98021 0.98287 0.87513 1.21578 1.02025 0.96470 1.07219 0.89804 0.87087 0.82967 0.95147 0.91861 0.90275 0.91388 0.89848 0.86818 0.87858 0.77021 0.76840 0.92214 0.88028 0.76181 0.91098 0.89713 0.95191 0.91730 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.67 10.92 21.84 0.24 -41.43 16 2 C 0.04 1.88 5.20 85.29 0.44 2.32 16 3 Si 0.98 37.09 29.59 68.60 2.03 39.12 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 6 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.49 -25.98 9.12 23.52 0.21 -25.76 16 8 H 0.08 4.18 7.90 -2.91 -0.02 4.16 16 9 C 0.11 5.88 5.60 -21.12 -0.12 5.76 16 10 C -0.30 -15.12 9.85 22.60 0.22 -14.90 16 11 C 0.11 5.35 11.10 84.26 0.94 6.28 16 12 N -0.61 -29.69 8.66 -194.47 -1.68 -31.37 16 13 C 0.29 14.32 6.41 132.90 0.85 15.17 16 14 N -0.48 -19.67 4.68 -702.17 -3.29 -22.95 16 15 C 0.08 2.84 4.65 86.32 0.40 3.24 16 16 C -0.09 -2.52 5.32 30.65 0.16 -2.36 16 17 C -0.04 -0.94 2.54 -11.46 -0.03 -0.97 16 18 C 0.13 3.08 5.32 40.42 0.21 3.30 16 19 C -0.21 -5.00 9.86 23.64 0.23 -4.77 16 20 C -0.25 -5.59 9.97 23.58 0.24 -5.36 16 21 C 0.12 2.20 6.90 40.49 0.28 2.48 16 22 N -0.87 -10.06 9.06 -46.41 -0.42 -10.48 16 23 C 0.17 2.84 7.21 85.62 0.62 3.45 16 24 N -0.75 -14.98 5.66 -334.72 -1.90 -16.88 16 25 C -0.09 -2.53 5.31 30.65 0.16 -2.37 16 26 C 0.07 2.38 5.24 86.33 0.45 2.84 16 27 C -0.25 -13.35 7.87 23.01 0.18 -13.17 16 28 H 0.29 13.48 8.29 -92.71 -0.77 12.71 16 29 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 30 H 0.15 5.87 8.06 -2.91 -0.02 5.84 16 31 H 0.03 1.12 8.11 -2.39 -0.02 1.10 16 32 H 0.06 2.46 7.71 -2.39 -0.02 2.44 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 35 H 0.08 2.08 7.88 -2.39 -0.02 2.07 16 36 H 0.11 2.64 7.94 -2.91 -0.02 2.62 16 37 H 0.10 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.40 3.87 8.81 -92.70 -0.82 3.05 16 39 H 0.40 2.86 8.89 -92.71 -0.82 2.03 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.40 7.66 8.04 -92.71 -0.75 6.91 16 43 H 0.07 1.91 7.29 -2.39 -0.02 1.89 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.06 2.54 6.67 -2.39 -0.02 2.53 16 47 H 0.12 6.40 5.29 -2.91 -0.02 6.39 16 Total: -1.00 -64.20 373.11 -0.93 -65.13 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -1.37 Total: 43.68 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 5.46 Total: -24.81 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -7.05 Total: -123.12 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -64.20 -0.93 -65.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163133079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.705 kcal (2) G-P(sol) polarization free energy of solvation -64.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds