Wall clock time and date at job start Tue Mar 31 2020 14:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31486 * 119.81054 * 2 1 4 4 C 1.32750 * 121.72485 * 180.02562 * 3 2 1 5 5 N 1.38370 * 119.42781 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99940 * 185.03119 * 5 4 3 7 7 H 1.09002 * 109.47144 * 321.37499 * 6 5 4 8 8 C 1.50702 * 109.47291 * 81.37908 * 6 5 4 9 9 C 1.38064 * 119.56772 * 244.99969 * 8 6 5 10 10 C 1.38838 * 119.33032 * 179.97438 * 9 8 6 11 11 C 1.38350 * 118.50036 * 359.97438 * 10 9 8 12 12 C 1.39092 * 119.09998 * 0.02562 * 11 10 9 13 13 N 1.39007 * 119.70765 * 179.97438 * 12 11 10 14 14 N 1.31932 * 119.57373 * 64.72480 * 8 6 5 15 15 C 1.53001 * 109.46935 * 201.37642 * 6 5 4 16 16 C 1.53002 * 109.47292 * 60.59708 * 15 6 5 17 17 C 1.53005 * 109.47055 * 180.59597 * 15 6 5 18 18 C 1.39700 * 121.14224 * 0.02562 * 4 3 2 19 19 C 1.36565 * 119.49482 * 359.96179 * 18 4 3 20 20 C 1.40749 * 119.82025 * 180.02562 * 2 1 3 21 21 C 1.41205 * 120.56930 * 359.70141 * 20 2 1 22 22 H 1.08001 * 119.99938 * 335.15780 * 21 20 2 23 23 C 1.39869 * 120.00266 * 155.15130 * 21 20 2 24 24 N 1.30902 * 119.99703 * 346.43385 * 23 21 20 25 25 Si 1.86802 * 120.00146 * 166.42707 * 23 21 20 26 26 H 1.48498 * 109.46876 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46535 * 120.00218 * 25 23 21 28 28 H 1.48493 * 109.47403 * 240.00247 * 25 23 21 29 29 H 1.09001 * 109.47038 * 269.97708 * 1 2 3 30 30 H 1.08998 * 109.47312 * 29.97541 * 1 2 3 31 31 H 1.08996 * 109.46998 * 149.98299 * 1 2 3 32 32 H 0.97007 * 119.99963 * 5.01854 * 5 4 3 33 33 H 1.08004 * 120.33638 * 359.97438 * 9 8 6 34 34 H 1.07990 * 120.75386 * 180.02562 * 10 9 8 35 35 H 1.08006 * 120.44936 * 179.97438 * 11 10 9 36 36 H 0.97005 * 119.99778 * 0.02562 * 13 12 11 37 37 H 0.96994 * 120.00472 * 180.02562 * 13 12 11 38 38 H 1.09007 * 109.47282 * 300.59503 * 15 6 5 39 39 H 1.08997 * 109.47298 * 62.66913 * 16 15 6 40 40 H 1.09003 * 109.47331 * 182.67179 * 16 15 6 41 41 H 1.08999 * 109.46906 * 302.66821 * 16 15 6 42 42 H 1.08994 * 109.46988 * 59.99923 * 17 15 6 43 43 H 1.09002 * 109.47125 * 180.02562 * 17 15 6 44 44 H 1.08999 * 109.47098 * 299.99761 * 17 15 6 45 45 H 1.08002 * 120.25502 * 179.97438 * 18 4 3 46 46 H 1.07994 * 120.79500 * 180.02562 * 19 18 4 47 47 H 0.97005 * 119.99764 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1409 0.0000 4 6 3.4874 1.1852 -0.0005 5 7 4.1266 2.4124 0.0001 6 6 5.5859 2.4783 -0.1118 7 1 6.0314 1.6668 0.4638 8 6 5.9853 2.3462 -1.5588 9 6 6.7121 1.2456 -1.9672 10 6 7.0770 1.1286 -3.3017 11 6 6.6955 2.1268 -4.1804 12 6 5.9640 3.2078 -3.6998 13 7 5.5745 4.2181 -4.5715 14 7 5.6314 3.2809 -2.4200 15 6 6.0790 3.8204 0.4329 16 6 5.6864 3.9482 1.9062 17 6 7.6016 3.8952 0.3025 18 6 4.2494 0.0143 -0.0016 19 6 3.6199 -1.1976 -0.0014 20 6 2.2069 -1.2211 -0.0005 21 6 1.5092 -2.4488 0.0052 22 1 0.5063 -2.4980 0.4028 23 6 2.1170 -3.6010 -0.5040 24 7 3.2083 -3.5033 -1.2202 25 14 1.3713 -5.2793 -0.1620 26 1 0.1483 -5.1183 0.6647 27 1 1.0172 -5.9345 -1.4468 28 1 2.3554 -6.1189 0.5672 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 3.6085 3.2291 0.0743 33 1 6.9939 0.4834 -1.2558 34 1 7.6451 0.2772 -3.6462 35 1 6.9628 2.0679 -5.2252 36 1 5.8127 4.1671 -5.5104 37 1 5.0646 4.9741 -4.2409 38 1 5.6253 4.6321 -0.1358 39 1 6.1782 3.1646 2.4825 40 1 5.9959 4.9237 2.2813 41 1 4.6056 3.8474 2.0042 42 1 7.8813 3.8042 -0.7470 43 1 7.9530 4.8512 0.6909 44 1 8.0554 3.0836 0.8711 45 1 5.3282 0.0671 -0.0024 46 1 4.1883 -2.1158 -0.0018 47 1 3.6300 -4.3024 -1.5731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163346490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:20 Heat of formation + Delta-G solvation = 58.846601 kcal Electronic energy + Delta-G solvation = -27934.880918 eV Core-core repulsion = 24309.609729 eV Total energy + Delta-G solvation = -3625.271189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.23687 -38.61327 -37.08127 -34.38677 -34.18480 -32.95081 -32.01147 -30.88728 -30.06976 -29.14314 -26.94996 -26.78729 -25.80495 -24.07463 -22.66085 -22.17282 -21.12486 -20.46065 -19.37408 -17.26825 -17.17312 -16.83328 -16.32171 -15.88530 -15.46685 -15.01764 -14.76019 -14.47631 -14.31454 -13.82798 -13.57114 -13.47805 -13.15071 -12.91568 -12.67057 -12.49125 -12.25342 -12.07358 -11.81262 -11.68750 -11.54329 -11.41723 -11.17571 -11.09741 -10.96030 -10.83639 -10.76252 -10.56691 -10.50286 -10.39845 -9.63892 -9.44308 -9.37508 -9.15572 -8.55396 -8.06634 -7.91193 -7.64898 -6.72526 -6.50743 -4.12111 1.50041 1.75650 2.78932 3.03777 3.11997 3.17234 3.34795 3.61584 3.98852 4.02887 4.34721 4.64856 4.80613 4.89228 5.06402 5.15343 5.30327 5.39020 5.50224 5.59746 5.70549 5.73784 5.78643 5.83664 5.88168 5.95112 6.05275 6.09551 6.16091 6.27853 6.40865 6.44976 6.49486 6.53280 6.61555 6.65679 6.74375 6.81387 6.86968 7.11983 7.29359 7.38852 7.47310 7.53884 7.59223 7.85042 7.98199 8.34736 8.50220 8.52805 8.74841 8.92461 9.01070 9.82676 10.31058 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.003799 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.238364 B = 7368.524008 C = 8126.996524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.036 3.964 3 N -0.521 5.521 4 C 0.289 3.711 5 N -0.724 5.724 6 C 0.224 3.776 7 H 0.086 0.914 8 C 0.177 3.823 9 C -0.217 4.217 10 C -0.033 4.033 11 C -0.248 4.248 12 C 0.398 3.602 13 N -0.858 5.858 14 N -0.525 5.525 15 C -0.093 4.093 16 C -0.145 4.145 17 C -0.141 4.141 18 C -0.208 4.208 19 C -0.090 4.090 20 C 0.031 3.969 21 C -0.452 4.452 22 H 0.079 0.921 23 C 0.072 3.928 24 N -0.810 5.810 25 Si 0.906 3.094 26 H -0.261 1.261 27 H -0.277 1.277 28 H -0.274 1.274 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.391 0.609 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.403 0.597 37 H 0.401 0.599 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.096 0.904 46 H 0.130 0.870 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.523 10.590 -2.386 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 N -0.237 5.237 4 C 0.057 3.943 5 N -0.361 5.361 6 C 0.115 3.885 7 H 0.104 0.896 8 C 0.036 3.964 9 C -0.240 4.240 10 C -0.059 4.059 11 C -0.273 4.273 12 C 0.161 3.839 13 N -0.401 5.401 14 N -0.244 5.244 15 C -0.112 4.112 16 C -0.202 4.202 17 C -0.199 4.199 18 C -0.232 4.232 19 C -0.116 4.116 20 C 0.026 3.974 21 C -0.483 4.483 22 H 0.097 0.903 23 C -0.143 4.143 24 N -0.437 5.437 25 Si 0.731 3.269 26 H -0.185 1.185 27 H -0.202 1.202 28 H -0.200 1.200 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.225 0.775 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.233 0.767 37 H 0.229 0.771 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.114 0.886 46 H 0.147 0.853 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.865 11.770 -2.203 14.899 hybrid contribution 0.464 -1.927 -0.821 2.146 sum 9.328 9.843 -3.024 13.894 Atomic orbital electron populations 1.20241 0.91365 1.00968 1.00163 1.20728 0.94616 0.87458 1.07402 1.66311 1.07416 1.31200 1.18761 1.17699 0.88188 0.84967 1.03470 1.43539 1.03024 1.05160 1.84392 1.19600 0.82613 0.97939 0.88310 0.89600 1.21565 0.89972 0.88670 0.96152 1.21683 1.04926 1.00405 0.96962 1.21235 0.95162 0.96615 0.92875 1.21223 1.08132 0.97227 1.00759 1.18310 0.89870 0.87549 0.88207 1.42118 1.63582 1.24683 1.09754 1.66865 1.24998 1.31251 1.01238 1.21244 0.96143 0.97047 0.96801 1.21814 1.02313 1.01031 0.95032 1.21764 0.94913 1.01566 1.01677 1.20832 0.98121 0.92911 1.11295 1.21350 0.94898 0.96260 0.99133 1.18160 0.92265 0.93014 0.93935 1.19379 1.01429 0.91924 1.35583 0.90319 1.25842 0.94534 1.01083 0.92868 1.69817 1.17624 1.30856 1.25443 0.86292 0.80055 0.81610 0.78923 1.18506 1.20216 1.19962 0.93479 0.93534 0.91449 0.77469 0.85332 0.85299 0.85917 0.76748 0.77073 0.90012 0.92709 0.93023 0.91874 0.92838 0.92644 0.92562 0.88585 0.85259 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 9.57 36.01 0.34 -1.18 16 2 C 0.04 0.93 6.86 -81.79 -0.56 0.37 16 3 N -0.52 -13.04 10.29 -8.05 -0.08 -13.12 16 4 C 0.29 6.69 7.56 -155.12 -1.17 5.52 16 5 N -0.72 -13.61 4.57 -54.99 -0.25 -13.86 16 6 C 0.22 3.52 1.63 -69.08 -0.11 3.41 16 7 H 0.09 1.37 6.14 -51.93 -0.32 1.05 16 8 C 0.18 2.90 4.24 -82.61 -0.35 2.55 16 9 C -0.22 -3.41 9.12 -39.42 -0.36 -3.77 16 10 C -0.03 -0.47 10.17 -39.32 -0.40 -0.87 16 11 C -0.25 -3.38 9.94 -39.22 -0.39 -3.77 16 12 C 0.40 5.80 7.75 -155.00 -1.20 4.60 16 13 N -0.86 -9.22 9.07 31.13 0.28 -8.94 16 14 N -0.53 -8.59 9.93 -8.67 -0.09 -8.68 16 15 C -0.09 -1.19 2.40 -90.62 -0.22 -1.41 16 16 C -0.14 -1.72 9.08 37.16 0.34 -1.38 16 17 C -0.14 -1.57 8.94 37.16 0.33 -1.24 16 18 C -0.21 -4.87 9.05 -39.64 -0.36 -5.23 16 19 C -0.09 -2.33 8.74 -39.01 -0.34 -2.67 16 20 C 0.03 0.84 5.59 -106.65 -0.60 0.24 16 21 C -0.45 -11.91 8.16 -37.85 -0.31 -12.21 16 22 H 0.08 1.99 6.84 -52.49 -0.36 1.63 16 23 C 0.07 1.80 5.24 -17.34 -0.09 1.71 16 24 N -0.81 -21.00 10.78 55.54 0.60 -20.41 16 25 Si 0.91 18.84 29.58 -169.99 -5.03 13.81 16 26 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 27 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 28 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.46 6.77 -51.93 -0.35 1.11 16 32 H 0.39 7.19 8.37 -40.82 -0.34 6.85 16 33 H 0.13 1.91 7.15 -52.48 -0.38 1.53 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.40 3.17 8.82 -40.82 -0.36 2.81 16 37 H 0.40 4.03 8.95 -40.82 -0.37 3.66 16 38 H 0.08 1.11 7.97 -51.93 -0.41 0.70 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.83 7.32 -51.93 -0.38 0.45 16 42 H 0.05 0.65 7.20 -51.93 -0.37 0.28 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 2.00 4.73 -52.49 -0.25 1.75 16 46 H 0.13 3.44 6.13 -52.49 -0.32 3.11 16 47 H 0.28 6.55 8.30 -40.82 -0.34 6.22 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -30.49 379.21 -11.02 -41.52 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -6.73 Total: 19.30 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -5.45 Total: -15.34 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: 0.46 Total: -65.00 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.49 -11.02 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163346490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.363 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds