Wall clock time and date at job start Tue Mar 31 2020 14:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31486 * 119.81054 * 2 1 4 4 C 1.32750 * 121.72485 * 180.02562 * 3 2 1 5 5 N 1.38370 * 119.42781 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99940 * 185.03119 * 5 4 3 7 7 H 1.09002 * 109.47144 * 321.37499 * 6 5 4 8 8 C 1.50702 * 109.47291 * 81.37908 * 6 5 4 9 9 C 1.38064 * 119.56772 * 244.99969 * 8 6 5 10 10 C 1.38838 * 119.33032 * 179.97438 * 9 8 6 11 11 C 1.38350 * 118.50036 * 359.97438 * 10 9 8 12 12 C 1.39092 * 119.09998 * 0.02562 * 11 10 9 13 13 N 1.39007 * 119.70765 * 179.97438 * 12 11 10 14 14 N 1.31932 * 119.57373 * 64.72480 * 8 6 5 15 15 C 1.53001 * 109.46935 * 201.37642 * 6 5 4 16 16 C 1.53002 * 109.47292 * 60.59708 * 15 6 5 17 17 C 1.53005 * 109.47055 * 180.59597 * 15 6 5 18 18 C 1.39700 * 121.14224 * 0.02562 * 4 3 2 19 19 C 1.36565 * 119.49482 * 359.96179 * 18 4 3 20 20 C 1.40749 * 119.82025 * 180.02562 * 2 1 3 21 21 C 1.41205 * 120.56930 * 359.70141 * 20 2 1 22 22 H 1.08001 * 119.99938 * 335.15780 * 21 20 2 23 23 C 1.39869 * 120.00266 * 155.15130 * 21 20 2 24 24 N 1.30902 * 119.99703 * 346.43385 * 23 21 20 25 25 Si 1.86802 * 120.00146 * 166.42707 * 23 21 20 26 26 H 1.48498 * 109.46876 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46535 * 120.00218 * 25 23 21 28 28 H 1.48493 * 109.47403 * 240.00247 * 25 23 21 29 29 H 1.09001 * 109.47038 * 269.97708 * 1 2 3 30 30 H 1.08998 * 109.47312 * 29.97541 * 1 2 3 31 31 H 1.08996 * 109.46998 * 149.98299 * 1 2 3 32 32 H 0.97007 * 119.99963 * 5.01854 * 5 4 3 33 33 H 1.08004 * 120.33638 * 359.97438 * 9 8 6 34 34 H 1.07990 * 120.75386 * 180.02562 * 10 9 8 35 35 H 1.08006 * 120.44936 * 179.97438 * 11 10 9 36 36 H 0.97005 * 119.99778 * 0.02562 * 13 12 11 37 37 H 0.96994 * 120.00472 * 180.02562 * 13 12 11 38 38 H 1.09007 * 109.47282 * 300.59503 * 15 6 5 39 39 H 1.08997 * 109.47298 * 62.66913 * 16 15 6 40 40 H 1.09003 * 109.47331 * 182.67179 * 16 15 6 41 41 H 1.08999 * 109.46906 * 302.66821 * 16 15 6 42 42 H 1.08994 * 109.46988 * 59.99923 * 17 15 6 43 43 H 1.09002 * 109.47125 * 180.02562 * 17 15 6 44 44 H 1.08999 * 109.47098 * 299.99761 * 17 15 6 45 45 H 1.08002 * 120.25502 * 179.97438 * 18 4 3 46 46 H 1.07994 * 120.79500 * 180.02562 * 19 18 4 47 47 H 0.97005 * 119.99764 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1409 0.0000 4 6 3.4874 1.1852 -0.0005 5 7 4.1266 2.4124 0.0001 6 6 5.5859 2.4783 -0.1118 7 1 6.0314 1.6668 0.4638 8 6 5.9853 2.3462 -1.5588 9 6 6.7121 1.2456 -1.9672 10 6 7.0770 1.1286 -3.3017 11 6 6.6955 2.1268 -4.1804 12 6 5.9640 3.2078 -3.6998 13 7 5.5745 4.2181 -4.5715 14 7 5.6314 3.2809 -2.4200 15 6 6.0790 3.8204 0.4329 16 6 5.6864 3.9482 1.9062 17 6 7.6016 3.8952 0.3025 18 6 4.2494 0.0143 -0.0016 19 6 3.6199 -1.1976 -0.0014 20 6 2.2069 -1.2211 -0.0005 21 6 1.5092 -2.4488 0.0052 22 1 0.5063 -2.4980 0.4028 23 6 2.1170 -3.6010 -0.5040 24 7 3.2083 -3.5033 -1.2202 25 14 1.3713 -5.2793 -0.1620 26 1 0.1483 -5.1183 0.6647 27 1 1.0172 -5.9345 -1.4468 28 1 2.3554 -6.1189 0.5672 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 3.6085 3.2291 0.0743 33 1 6.9939 0.4834 -1.2558 34 1 7.6451 0.2772 -3.6462 35 1 6.9628 2.0679 -5.2252 36 1 5.8127 4.1671 -5.5104 37 1 5.0646 4.9741 -4.2409 38 1 5.6253 4.6321 -0.1358 39 1 6.1782 3.1646 2.4825 40 1 5.9959 4.9237 2.2813 41 1 4.6056 3.8474 2.0042 42 1 7.8813 3.8042 -0.7470 43 1 7.9530 4.8512 0.6909 44 1 8.0554 3.0836 0.8711 45 1 5.3282 0.0671 -0.0024 46 1 4.1883 -2.1158 -0.0018 47 1 3.6300 -4.3024 -1.5731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163346490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:19 Heat of formation + Delta-G solvation = 41.448608 kcal Electronic energy + Delta-G solvation = -27935.635352 eV Core-core repulsion = 24309.609729 eV Total energy + Delta-G solvation = -3626.025622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.43047 -40.35738 -38.38825 -35.96959 -35.36215 -34.56971 -33.15659 -32.74134 -31.70311 -30.38067 -28.62822 -27.90537 -27.17202 -25.78807 -23.83309 -23.36771 -22.95279 -22.01755 -20.72304 -19.08375 -18.34455 -17.97355 -17.91170 -17.16829 -16.86372 -16.66096 -15.97944 -15.74180 -15.56736 -15.38914 -15.11962 -14.81138 -14.62194 -14.30884 -13.99593 -13.70826 -13.63298 -13.43930 -13.36570 -13.20038 -13.01063 -12.90635 -12.80145 -12.69970 -12.56865 -12.18910 -12.02122 -11.88230 -11.68281 -11.47965 -11.44246 -11.19615 -10.62657 -10.48362 -10.16896 -9.94921 -9.83577 -8.70481 -8.58295 -8.32935 -6.06512 0.35339 0.62439 0.93117 1.18054 1.42691 1.56478 1.58399 2.27012 2.60404 2.65025 2.88338 3.11569 3.55761 3.76536 3.82584 4.00796 4.10541 4.20238 4.28872 4.34674 4.43011 4.50675 4.63534 4.66990 4.76017 4.77480 4.80540 4.82338 4.86432 5.00713 5.02531 5.05192 5.08978 5.18940 5.22911 5.24226 5.40508 5.43107 5.45334 5.49452 5.59778 5.72213 5.74571 5.95742 6.05727 6.45449 6.54127 6.63285 6.69132 6.90552 7.00026 7.19652 7.44345 7.93192 8.46310 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012758 B = 0.003799 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.238364 B = 7368.524008 C = 8126.996524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.018 3.982 3 N -0.539 5.539 4 C 0.295 3.705 5 N -0.714 5.714 6 C 0.222 3.778 7 H 0.082 0.918 8 C 0.162 3.838 9 C -0.239 4.239 10 C -0.040 4.040 11 C -0.250 4.250 12 C 0.383 3.617 13 N -0.843 5.843 14 N -0.546 5.546 15 C -0.083 4.083 16 C -0.141 4.141 17 C -0.134 4.134 18 C -0.210 4.210 19 C -0.106 4.106 20 C -0.003 4.003 21 C -0.480 4.480 22 H 0.080 0.920 23 C 0.031 3.969 24 N -0.842 5.842 25 Si 0.979 3.021 26 H -0.257 1.257 27 H -0.271 1.271 28 H -0.268 1.268 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.393 0.607 33 H 0.129 0.871 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.418 0.582 37 H 0.405 0.595 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.118 0.882 46 H 0.117 0.883 47 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.203 11.144 -2.864 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 N -0.256 5.256 4 C 0.061 3.939 5 N -0.350 5.350 6 C 0.114 3.886 7 H 0.099 0.901 8 C 0.022 3.978 9 C -0.262 4.262 10 C -0.065 4.065 11 C -0.274 4.274 12 C 0.145 3.855 13 N -0.388 5.388 14 N -0.265 5.265 15 C -0.102 4.102 16 C -0.198 4.198 17 C -0.192 4.192 18 C -0.234 4.234 19 C -0.133 4.133 20 C -0.008 4.008 21 C -0.512 4.512 22 H 0.098 0.902 23 C -0.181 4.181 24 N -0.470 5.470 25 Si 0.801 3.199 26 H -0.181 1.181 27 H -0.196 1.196 28 H -0.192 1.192 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.228 0.772 33 H 0.147 0.853 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.250 0.750 37 H 0.234 0.766 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.566 12.377 -2.705 15.875 hybrid contribution 0.352 -1.924 -0.752 2.096 sum 9.918 10.453 -3.457 14.818 Atomic orbital electron populations 1.20215 0.89275 1.01304 1.01205 1.21265 0.96355 0.87377 1.06960 1.66445 1.08232 1.30991 1.19918 1.18036 0.87972 0.86439 1.01443 1.43631 1.04392 1.03689 1.83312 1.19808 0.80494 0.99580 0.88699 0.90051 1.21523 0.90823 0.89212 0.96195 1.21838 1.05875 1.00490 0.98015 1.21584 0.95015 0.97537 0.92387 1.21581 1.07206 0.96500 1.02158 1.18688 0.89989 0.88641 0.88195 1.42092 1.62765 1.23793 1.10127 1.66843 1.25924 1.31613 1.02162 1.21174 0.97223 0.94859 0.96986 1.21784 1.01212 1.02374 0.94430 1.21707 0.93410 1.02917 1.01191 1.20987 0.99277 0.92310 1.10824 1.21365 0.94998 0.96690 1.00232 1.18496 0.92912 0.93973 0.95407 1.19585 1.01892 0.92738 1.36939 0.90179 1.26656 0.94855 1.04505 0.92076 1.69880 1.18843 1.32182 1.26099 0.85196 0.79280 0.76619 0.78844 1.18070 1.19622 1.19246 0.91985 0.92482 0.91659 0.77196 0.85344 0.83002 0.82993 0.74999 0.76590 0.90690 0.92572 0.90845 0.93512 0.93976 0.90743 0.91871 0.86447 0.86527 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.74 9.57 71.24 0.68 -2.06 16 2 C 0.02 0.95 6.86 43.22 0.30 1.25 16 3 N -0.54 -27.26 10.29 -179.37 -1.85 -29.11 16 4 C 0.30 13.80 7.56 133.31 1.01 14.81 16 5 N -0.71 -26.83 4.57 -327.89 -1.50 -28.33 16 6 C 0.22 6.89 1.63 44.25 0.07 6.96 16 7 H 0.08 2.59 6.14 -2.39 -0.01 2.57 16 8 C 0.16 5.26 4.24 42.50 0.18 5.44 16 9 C -0.24 -7.44 9.12 22.37 0.20 -7.23 16 10 C -0.04 -1.07 10.17 22.44 0.23 -0.84 16 11 C -0.25 -6.33 9.94 22.50 0.22 -6.11 16 12 C 0.38 10.62 7.75 133.04 1.03 11.65 16 13 N -0.84 -16.54 9.07 -55.44 -0.50 -17.04 16 14 N -0.55 -17.47 9.93 -181.34 -1.80 -19.27 16 15 C -0.08 -2.03 2.40 -10.79 -0.03 -2.06 16 16 C -0.14 -3.15 9.08 71.98 0.65 -2.50 16 17 C -0.13 -2.77 8.94 71.98 0.64 -2.13 16 18 C -0.21 -10.04 9.05 22.23 0.20 -9.83 16 19 C -0.11 -5.69 8.74 22.64 0.20 -5.49 16 20 C 0.00 -0.16 5.59 -21.18 -0.12 -0.28 16 21 C -0.48 -25.87 8.16 23.39 0.19 -25.68 16 22 H 0.08 4.13 6.84 -2.91 -0.02 4.11 16 23 C 0.03 1.58 5.24 85.23 0.45 2.02 16 24 N -0.84 -44.50 10.78 21.82 0.24 -44.26 16 25 Si 0.98 38.76 29.58 68.60 2.03 40.79 16 26 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 27 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 28 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 29 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.06 2.85 6.77 -2.39 -0.02 2.83 16 32 H 0.39 14.43 8.37 -92.70 -0.78 13.65 16 33 H 0.13 3.84 7.15 -2.91 -0.02 3.82 16 34 H 0.15 3.26 8.06 -2.92 -0.02 3.24 16 35 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.42 5.56 8.82 -92.70 -0.82 4.74 16 37 H 0.40 7.48 8.95 -92.71 -0.83 6.65 16 38 H 0.07 1.96 7.97 -2.38 -0.02 1.94 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.20 7.32 -2.39 -0.02 1.18 16 42 H 0.04 0.97 7.20 -2.39 -0.02 0.95 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.12 4.96 4.73 -2.91 -0.01 4.94 16 46 H 0.12 6.45 6.13 -2.91 -0.02 6.44 16 47 H 0.28 13.59 8.30 -92.70 -0.77 12.82 16 Total: -1.00 -66.61 379.21 1.34 -65.27 By element: Atomic # 1 Polarization: 55.43 SS G_CDS: -1.39 Total: 54.04 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 6.11 Total: -22.08 kcal Atomic # 7 Polarization: -132.60 SS G_CDS: -5.41 Total: -138.02 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -66.61 1.34 -65.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163346490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.718 kcal (2) G-P(sol) polarization free energy of solvation -66.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds