Wall clock time and date at job start Tue Mar 31 2020 14:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48502 * 109.47364 * 274.98711 * 3 2 1 5 5 H 1.48504 * 109.47358 * 34.98854 * 3 2 1 6 6 H 1.48500 * 109.47334 * 154.98695 * 3 2 1 7 7 C 1.40105 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00034 * 186.14830 * 7 2 1 9 9 C 1.40857 * 119.99993 * 6.14165 * 7 2 1 10 10 N 1.33920 * 120.27188 * 353.24070 * 9 7 2 11 11 C 1.31696 * 119.88626 * 180.02562 * 10 9 7 12 12 C 1.38998 * 120.46049 * 0.25699 * 11 10 9 13 13 N 1.32217 * 120.56009 * 359.46593 * 12 11 10 14 14 C 1.32585 * 120.09138 * 0.53099 * 13 12 11 15 15 N 1.38273 * 120.22495 * 179.74830 * 14 13 12 16 16 C 1.37309 * 120.00311 * 359.97438 * 15 14 13 17 17 N 1.29285 * 120.00120 * 359.97438 * 16 15 14 18 18 C 1.50708 * 120.00062 * 179.97438 * 16 15 14 19 19 C 1.52996 * 109.46732 * 59.99754 * 18 16 15 20 20 C 1.53009 * 109.46788 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.46582 * 60.00294 * 20 19 18 22 22 C 1.52996 * 109.47393 * 299.99936 * 21 20 19 23 23 C 1.53003 * 109.46919 * 299.99977 * 22 21 20 24 24 C 1.52994 * 109.47023 * 60.00353 * 23 22 21 25 25 C 1.53000 * 109.47209 * 300.00424 * 20 19 18 26 26 C 1.52999 * 109.47552 * 59.99687 * 24 23 22 27 27 C 1.52999 * 109.47371 * 60.00099 * 22 21 20 28 28 H 0.97001 * 119.99674 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.76992 * 179.97438 * 11 10 9 30 30 H 1.08004 * 119.71606 * 179.74897 * 12 11 10 31 31 H 0.97005 * 119.99639 * 179.97438 * 15 14 13 32 32 H 0.97000 * 120.00424 * 179.97438 * 17 16 15 33 33 H 1.08997 * 109.47646 * 300.00155 * 19 18 16 34 34 H 1.09005 * 109.47155 * 60.00393 * 19 18 16 35 35 H 1.08995 * 109.46855 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.46977 * 179.97438 * 21 20 19 37 37 H 1.09007 * 109.47057 * 60.00184 * 21 20 19 38 38 H 1.09008 * 109.46969 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47326 * 299.99911 * 23 22 21 40 40 H 1.09007 * 109.46995 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47369 * 180.02562 * 24 23 22 42 42 H 1.08992 * 109.47053 * 299.99755 * 25 20 19 43 43 H 1.09002 * 109.46971 * 179.97438 * 25 20 19 44 44 H 1.08992 * 109.47429 * 180.02562 * 26 24 23 45 45 H 1.09003 * 109.47113 * 59.99542 * 26 24 23 46 46 H 1.08991 * 109.47115 * 179.97438 * 27 22 21 47 47 H 1.09007 * 109.46909 * 59.99856 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4955 2.6200 0.8028 6 1 3.5876 1.4121 0.5920 7 6 2.0079 -1.2133 -0.0005 8 1 3.0832 -1.2161 0.0996 9 6 1.3097 -2.4296 -0.1316 10 7 -0.0294 -2.4440 -0.1202 11 6 -0.6745 -3.5856 -0.2428 12 6 0.0249 -4.7790 -0.3789 13 7 1.3469 -4.7851 -0.3978 14 6 2.0187 -3.6486 -0.2761 15 7 3.4014 -3.6523 -0.2903 16 6 4.0834 -4.8358 -0.4304 17 7 3.4328 -5.9467 -0.5484 18 6 5.5904 -4.8397 -0.4465 19 6 6.1159 -4.2637 0.8699 20 6 7.6458 -4.2683 0.8539 21 6 8.1461 -3.4138 -0.3125 22 6 7.6205 -3.9897 -1.6289 23 6 8.1246 -5.4247 -1.7950 24 6 7.6243 -6.2792 -0.6288 25 6 8.1499 -5.7033 0.6877 26 6 6.0944 -6.2747 -0.6126 27 6 6.0906 -3.9852 -1.6128 28 1 -0.4850 0.8401 -0.0004 29 1 -1.7544 -3.5950 -0.2330 30 1 -0.5163 -5.7088 -0.4745 31 1 3.8895 -2.8188 -0.2014 32 1 3.9145 -6.7828 -0.6477 33 1 5.7564 -3.2415 0.9885 34 1 5.7598 -4.8728 1.7009 35 1 8.0202 -3.8583 1.7919 36 1 9.2360 -3.4166 -0.3237 37 1 7.7870 -2.3914 -0.1941 38 1 7.9773 -3.3811 -2.4599 39 1 9.2145 -5.4279 -1.8065 40 1 7.7498 -5.8352 -2.7327 41 1 7.9837 -7.3014 -0.7468 42 1 7.7935 -6.3120 1.5186 43 1 9.2398 -5.7065 0.6758 44 1 5.7380 -6.8831 0.2185 45 1 5.7199 -6.6850 -1.5505 46 1 5.7162 -4.3950 -2.5508 47 1 5.7315 -2.9628 -1.4944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163840510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:16 Heat of formation + Delta-G solvation = 59.596310 kcal Electronic energy + Delta-G solvation = -28909.031317 eV Core-core repulsion = 25283.792638 eV Total energy + Delta-G solvation = -3625.238679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66104 -39.06692 -36.79918 -33.99122 -33.40639 -32.69547 -32.68381 -31.43417 -30.79781 -28.94010 -26.03117 -25.96990 -25.81940 -23.40947 -22.07478 -21.49806 -21.46147 -21.20919 -19.19900 -17.87533 -17.57953 -16.81210 -15.92350 -15.30321 -14.76829 -14.53280 -14.52085 -14.45263 -14.10164 -13.96940 -13.91565 -13.39190 -13.36393 -13.18028 -13.15877 -12.74974 -12.50893 -12.46362 -12.02016 -11.66303 -11.43805 -11.32405 -10.97260 -10.97228 -10.91053 -10.89491 -10.79726 -10.69171 -10.26878 -10.16213 -9.77235 -9.72143 -9.66523 -9.23619 -9.02765 -8.42005 -8.15396 -7.16055 -6.90937 -6.40908 -4.50614 2.55217 2.96166 3.02178 3.04244 3.25386 3.63953 3.84859 3.95401 4.40006 4.44860 4.45785 4.72785 4.97903 5.05869 5.10671 5.14683 5.15423 5.16257 5.26764 5.28204 5.29620 5.55607 5.60193 5.66845 5.69108 5.86887 5.89452 5.91316 5.92092 5.98536 5.99040 6.04338 6.04496 6.08679 6.14415 6.16707 6.26274 6.33895 6.38413 6.42682 6.46694 6.67766 6.87241 7.03473 7.03945 7.65607 7.87347 8.04645 8.28503 8.56680 8.82431 9.27725 9.61087 9.99636 10.19973 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.004401 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.513822 B = 6360.697829 C = 7882.964615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.428 4.428 8 H 0.081 0.919 9 C 0.205 3.795 10 N -0.449 5.449 11 C 0.045 3.955 12 C -0.094 4.094 13 N -0.402 5.402 14 C 0.209 3.791 15 N -0.616 5.616 16 C 0.395 3.605 17 N -0.707 5.707 18 C -0.055 4.055 19 C -0.099 4.099 20 C -0.085 4.085 21 C -0.108 4.108 22 C -0.085 4.085 23 C -0.108 4.108 24 C -0.082 4.082 25 C -0.108 4.108 26 C -0.103 4.103 27 C -0.099 4.099 28 H 0.275 0.725 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.414 0.586 32 H 0.322 0.678 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.690 -4.861 -0.706 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.155 4.155 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.461 4.461 8 H 0.099 0.901 9 C 0.073 3.927 10 N -0.167 5.167 11 C -0.120 4.120 12 C -0.252 4.252 13 N -0.119 5.119 14 C -0.034 4.034 15 N -0.250 5.250 16 C 0.109 3.891 17 N -0.335 5.335 18 C -0.061 4.061 19 C -0.137 4.137 20 C -0.103 4.103 21 C -0.146 4.146 22 C -0.103 4.103 23 C -0.145 4.145 24 C -0.100 4.100 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.137 4.137 28 H 0.086 0.914 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.252 0.748 32 H 0.139 0.861 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.306 -5.091 -0.728 16.147 hybrid contribution 1.377 0.767 -0.031 1.576 sum 16.682 -4.325 -0.759 17.251 Atomic orbital electron populations 1.70094 1.07214 1.28051 1.27977 1.26002 0.94901 1.00937 0.93698 0.86330 0.80525 0.80968 0.79182 1.19381 1.19991 1.18400 1.19219 0.94103 0.89548 1.43279 0.90104 1.19023 0.89387 0.91065 0.93252 1.69531 1.06423 1.24418 1.16328 1.23337 0.99791 0.90597 0.98263 1.22599 0.90326 0.97632 1.14602 1.67853 1.07309 1.26678 1.10063 1.19216 0.84058 0.91483 1.08602 1.41138 1.03284 1.06295 1.74259 1.21274 0.87074 0.88273 0.92449 1.69562 1.39942 0.99032 1.24924 1.20457 0.92499 0.96540 0.96559 1.21532 0.94681 1.01405 0.96120 1.21055 0.95413 0.95525 0.98338 1.21552 0.99843 0.98967 0.94217 1.21054 0.95369 0.96261 0.97644 1.21547 0.99924 0.95111 0.97924 1.21009 0.94925 0.98850 0.95234 1.21546 0.99851 0.95991 0.97119 1.21578 0.95336 0.95125 1.02030 1.21530 0.94746 0.99939 0.97532 0.91360 0.85731 0.85892 0.74800 0.86148 0.91332 0.91707 0.91159 0.92178 0.91694 0.91154 0.92125 0.92052 0.91247 0.92051 0.92127 0.91556 0.91552 0.91697 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.38 11.51 55.56 0.64 -17.74 16 2 C 0.07 1.71 5.49 -17.32 -0.10 1.62 16 3 Si 0.91 17.53 29.56 -169.99 -5.03 12.50 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 7 C -0.43 -10.69 8.86 -37.89 -0.34 -11.02 16 8 H 0.08 1.79 6.17 -52.49 -0.32 1.47 16 9 C 0.21 5.49 6.56 -84.62 -0.55 4.93 16 10 N -0.45 -12.40 8.07 -10.80 -0.09 -12.49 16 11 C 0.05 1.12 11.21 -17.33 -0.19 0.93 16 12 C -0.09 -2.30 11.22 -17.10 -0.19 -2.49 16 13 N -0.40 -10.30 7.85 -11.61 -0.09 -10.39 16 14 C 0.21 5.25 7.47 -154.56 -1.15 4.10 16 15 N -0.62 -12.72 5.17 -8.92 -0.05 -12.77 16 16 C 0.40 7.24 6.44 -154.30 -0.99 6.25 16 17 N -0.71 -14.35 11.24 32.95 0.37 -13.98 16 18 C -0.06 -0.74 0.63 -155.66 -0.10 -0.84 16 19 C -0.10 -1.23 4.38 -26.73 -0.12 -1.35 16 20 C -0.08 -0.85 3.20 -90.62 -0.29 -1.14 16 21 C -0.11 -1.03 5.19 -26.73 -0.14 -1.17 16 22 C -0.08 -0.85 3.19 -90.62 -0.29 -1.14 16 23 C -0.11 -1.00 5.19 -26.73 -0.14 -1.13 16 24 C -0.08 -0.79 3.19 -90.62 -0.29 -1.08 16 25 C -0.11 -1.00 5.19 -26.73 -0.14 -1.13 16 26 C -0.10 -1.22 3.22 -26.73 -0.09 -1.31 16 27 C -0.10 -1.24 4.38 -26.73 -0.12 -1.35 16 28 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 29 H 0.13 2.71 8.06 -52.49 -0.42 2.28 16 30 H 0.12 2.67 8.06 -52.48 -0.42 2.24 16 31 H 0.41 7.75 5.65 -40.82 -0.23 7.52 16 32 H 0.32 5.69 6.30 -40.82 -0.26 5.43 16 33 H 0.07 0.89 7.59 -51.93 -0.39 0.49 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 45 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.89 7.60 -51.93 -0.39 0.50 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -30.62 352.38 -11.18 -41.80 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -7.03 Total: 15.09 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -5.22 Total: -7.32 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: 0.79 Total: -67.37 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.62 -11.18 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163840510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.395 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds