Wall clock time and date at job start Tue Mar 31 2020 14:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48502 * 109.47364 * 274.98711 * 3 2 1 5 5 H 1.48504 * 109.47358 * 34.98854 * 3 2 1 6 6 H 1.48500 * 109.47334 * 154.98695 * 3 2 1 7 7 C 1.40105 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00034 * 186.14830 * 7 2 1 9 9 C 1.40857 * 119.99993 * 6.14165 * 7 2 1 10 10 N 1.33920 * 120.27188 * 353.24070 * 9 7 2 11 11 C 1.31696 * 119.88626 * 180.02562 * 10 9 7 12 12 C 1.38998 * 120.46049 * 0.25699 * 11 10 9 13 13 N 1.32217 * 120.56009 * 359.46593 * 12 11 10 14 14 C 1.32585 * 120.09138 * 0.53099 * 13 12 11 15 15 N 1.38273 * 120.22495 * 179.74830 * 14 13 12 16 16 C 1.37309 * 120.00311 * 359.97438 * 15 14 13 17 17 N 1.29285 * 120.00120 * 359.97438 * 16 15 14 18 18 C 1.50708 * 120.00062 * 179.97438 * 16 15 14 19 19 C 1.52996 * 109.46732 * 59.99754 * 18 16 15 20 20 C 1.53009 * 109.46788 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.46582 * 60.00294 * 20 19 18 22 22 C 1.52996 * 109.47393 * 299.99936 * 21 20 19 23 23 C 1.53003 * 109.46919 * 299.99977 * 22 21 20 24 24 C 1.52994 * 109.47023 * 60.00353 * 23 22 21 25 25 C 1.53000 * 109.47209 * 300.00424 * 20 19 18 26 26 C 1.52999 * 109.47552 * 59.99687 * 24 23 22 27 27 C 1.52999 * 109.47371 * 60.00099 * 22 21 20 28 28 H 0.97001 * 119.99674 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.76992 * 179.97438 * 11 10 9 30 30 H 1.08004 * 119.71606 * 179.74897 * 12 11 10 31 31 H 0.97005 * 119.99639 * 179.97438 * 15 14 13 32 32 H 0.97000 * 120.00424 * 179.97438 * 17 16 15 33 33 H 1.08997 * 109.47646 * 300.00155 * 19 18 16 34 34 H 1.09005 * 109.47155 * 60.00393 * 19 18 16 35 35 H 1.08995 * 109.46855 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.46977 * 179.97438 * 21 20 19 37 37 H 1.09007 * 109.47057 * 60.00184 * 21 20 19 38 38 H 1.09008 * 109.46969 * 180.02562 * 22 21 20 39 39 H 1.09002 * 109.47326 * 299.99911 * 23 22 21 40 40 H 1.09007 * 109.46995 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47369 * 180.02562 * 24 23 22 42 42 H 1.08992 * 109.47053 * 299.99755 * 25 20 19 43 43 H 1.09002 * 109.46971 * 179.97438 * 25 20 19 44 44 H 1.08992 * 109.47429 * 180.02562 * 26 24 23 45 45 H 1.09003 * 109.47113 * 59.99542 * 26 24 23 46 46 H 1.08991 * 109.47115 * 179.97438 * 27 22 21 47 47 H 1.09007 * 109.46909 * 59.99856 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4955 2.6200 0.8028 6 1 3.5876 1.4121 0.5920 7 6 2.0079 -1.2133 -0.0005 8 1 3.0832 -1.2161 0.0996 9 6 1.3097 -2.4296 -0.1316 10 7 -0.0294 -2.4440 -0.1202 11 6 -0.6745 -3.5856 -0.2428 12 6 0.0249 -4.7790 -0.3789 13 7 1.3469 -4.7851 -0.3978 14 6 2.0187 -3.6486 -0.2761 15 7 3.4014 -3.6523 -0.2903 16 6 4.0834 -4.8358 -0.4304 17 7 3.4328 -5.9467 -0.5484 18 6 5.5904 -4.8397 -0.4465 19 6 6.1159 -4.2637 0.8699 20 6 7.6458 -4.2683 0.8539 21 6 8.1461 -3.4138 -0.3125 22 6 7.6205 -3.9897 -1.6289 23 6 8.1246 -5.4247 -1.7950 24 6 7.6243 -6.2792 -0.6288 25 6 8.1499 -5.7033 0.6877 26 6 6.0944 -6.2747 -0.6126 27 6 6.0906 -3.9852 -1.6128 28 1 -0.4850 0.8401 -0.0004 29 1 -1.7544 -3.5950 -0.2330 30 1 -0.5163 -5.7088 -0.4745 31 1 3.8895 -2.8188 -0.2014 32 1 3.9145 -6.7828 -0.6477 33 1 5.7564 -3.2415 0.9885 34 1 5.7598 -4.8728 1.7009 35 1 8.0202 -3.8583 1.7919 36 1 9.2360 -3.4166 -0.3237 37 1 7.7870 -2.3914 -0.1941 38 1 7.9773 -3.3811 -2.4599 39 1 9.2145 -5.4279 -1.8065 40 1 7.7498 -5.8352 -2.7327 41 1 7.9837 -7.3014 -0.7468 42 1 7.7935 -6.3120 1.5186 43 1 9.2398 -5.7065 0.6758 44 1 5.7380 -6.8831 0.2185 45 1 5.7199 -6.6850 -1.5505 46 1 5.7162 -4.3950 -2.5508 47 1 5.7315 -2.9628 -1.4944 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163840510.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:15 Heat of formation + Delta-G solvation = 43.749702 kcal Electronic energy + Delta-G solvation = -28909.718478 eV Core-core repulsion = 25283.792638 eV Total energy + Delta-G solvation = -3625.925839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60948 -40.91072 -38.29689 -35.86657 -34.84795 -33.66437 -33.50899 -33.28122 -32.07812 -30.75453 -27.87247 -26.82786 -26.79080 -24.99769 -23.83315 -22.83470 -22.31504 -22.22276 -20.71648 -19.52102 -18.97060 -18.14181 -17.66092 -16.86635 -16.18955 -15.84900 -15.72448 -15.50881 -15.34392 -15.33286 -15.27566 -14.70063 -14.52880 -14.26926 -14.23956 -14.02299 -13.77985 -13.35644 -13.29756 -13.21572 -13.16311 -12.89820 -12.42089 -11.92271 -11.87510 -11.82398 -11.81389 -11.74850 -11.71759 -11.51260 -11.29053 -10.95537 -10.91170 -10.54239 -10.53499 -10.21207 -9.73915 -8.98955 -8.73124 -8.26961 -6.42972 0.69157 1.21516 1.43480 1.57415 1.58388 2.06192 2.21597 2.40227 2.87423 3.42307 3.52929 3.59215 3.93462 4.06085 4.10927 4.18973 4.23256 4.27624 4.29330 4.30131 4.32177 4.35853 4.42079 4.44319 4.44959 4.73202 4.80141 4.81321 4.84867 4.88095 4.96844 5.05769 5.11018 5.12272 5.14465 5.15889 5.18156 5.19369 5.22806 5.26650 5.29810 5.50599 5.56300 5.62140 5.62741 5.78814 6.07363 6.26774 6.57418 6.69826 6.98128 7.54911 7.92892 8.09194 8.39632 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.004401 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.513822 B = 6360.697829 C = 7882.964615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.024 3.976 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.243 1.243 7 C -0.444 4.444 8 H 0.101 0.899 9 C 0.172 3.828 10 N -0.485 5.485 11 C 0.032 3.968 12 C -0.105 4.105 13 N -0.421 5.421 14 C 0.203 3.797 15 N -0.614 5.614 16 C 0.392 3.608 17 N -0.744 5.744 18 C -0.045 4.045 19 C -0.099 4.099 20 C -0.081 4.081 21 C -0.106 4.106 22 C -0.081 4.081 23 C -0.106 4.106 24 C -0.078 4.078 25 C -0.106 4.106 26 C -0.100 4.100 27 C -0.099 4.099 28 H 0.282 0.718 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.420 0.580 32 H 0.333 0.667 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.209 -4.106 -0.714 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.199 4.199 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.166 1.166 7 C -0.477 4.477 8 H 0.119 0.881 9 C 0.040 3.960 10 N -0.204 5.204 11 C -0.132 4.132 12 C -0.262 4.262 13 N -0.139 5.139 14 C -0.041 4.041 15 N -0.249 5.249 16 C 0.107 3.893 17 N -0.373 5.373 18 C -0.049 4.049 19 C -0.137 4.137 20 C -0.099 4.099 21 C -0.144 4.144 22 C -0.099 4.099 23 C -0.143 4.143 24 C -0.096 4.096 25 C -0.143 4.143 26 C -0.139 4.139 27 C -0.137 4.137 28 H 0.092 0.908 29 H 0.166 0.834 30 H 0.164 0.836 31 H 0.260 0.740 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.842 -4.380 -0.736 19.359 hybrid contribution 0.208 0.465 -0.032 0.511 sum 19.051 -3.914 -0.768 19.464 Atomic orbital electron populations 1.70206 1.09210 1.29547 1.28449 1.27036 0.95677 1.04659 0.92501 0.85107 0.79539 0.75384 0.79289 1.18962 1.19644 1.16588 1.19697 0.95236 0.89740 1.43010 0.88106 1.19507 0.89731 0.92464 0.94319 1.69488 1.07283 1.25734 1.17869 1.23701 1.00965 0.90316 0.98220 1.22995 0.90411 0.98520 1.14235 1.67961 1.07881 1.26982 1.11066 1.19479 0.85830 0.91057 1.07774 1.41160 1.01865 1.07604 1.74233 1.21849 0.89497 0.87067 0.90838 1.69441 1.41898 1.00174 1.25773 1.20407 0.88596 0.98151 0.97794 1.21533 0.97057 1.00394 0.94735 1.21058 0.92951 0.96562 0.99371 1.21561 1.01100 0.98514 0.93186 1.21057 0.92906 0.97330 0.98648 1.21556 1.01188 0.94124 0.97433 1.21024 0.92607 1.00036 0.95966 1.21555 1.01106 0.95086 0.96555 1.21569 0.97531 0.93587 1.01171 1.21532 0.97132 0.98927 0.96146 0.90754 0.83435 0.83596 0.74031 0.84927 0.92183 0.93118 0.90013 0.89964 0.91958 0.90005 0.89911 0.92371 0.89786 0.92362 0.89914 0.92437 0.92441 0.93121 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.54 11.51 21.85 0.25 -39.29 16 2 C 0.02 1.16 5.49 85.31 0.47 1.63 16 3 Si 0.99 35.30 29.56 68.60 2.03 37.33 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 6 H -0.24 -7.94 7.11 99.48 0.71 -7.24 16 7 C -0.44 -22.44 8.86 23.36 0.21 -22.23 16 8 H 0.10 4.47 6.17 -2.91 -0.02 4.45 16 9 C 0.17 9.50 6.56 40.33 0.26 9.76 16 10 N -0.49 -27.72 8.07 -188.07 -1.52 -29.23 16 11 C 0.03 1.64 11.21 84.90 0.95 2.59 16 12 C -0.11 -5.26 11.22 84.82 0.95 -4.31 16 13 N -0.42 -22.22 7.85 -190.65 -1.50 -23.72 16 14 C 0.20 10.50 7.47 133.91 1.00 11.50 16 15 N -0.61 -26.01 5.17 -182.13 -0.94 -26.95 16 16 C 0.39 14.69 6.44 137.74 0.89 15.58 16 17 N -0.74 -31.04 11.24 -49.67 -0.56 -31.60 16 18 C -0.04 -1.18 0.63 -52.93 -0.03 -1.21 16 19 C -0.10 -2.37 4.38 30.60 0.13 -2.24 16 20 C -0.08 -1.40 3.20 -10.79 -0.03 -1.43 16 21 C -0.11 -1.64 5.19 30.59 0.16 -1.49 16 22 C -0.08 -1.40 3.19 -10.79 -0.03 -1.43 16 23 C -0.11 -1.60 5.19 30.59 0.16 -1.44 16 24 C -0.08 -1.29 3.19 -10.79 -0.03 -1.32 16 25 C -0.11 -1.60 5.19 30.60 0.16 -1.44 16 26 C -0.10 -2.31 3.22 30.59 0.10 -2.21 16 27 C -0.10 -2.38 4.38 30.59 0.13 -2.25 16 28 H 0.28 13.36 8.29 -92.71 -0.77 12.59 16 29 H 0.15 6.56 8.06 -2.91 -0.02 6.54 16 30 H 0.15 6.40 8.06 -2.91 -0.02 6.38 16 31 H 0.42 16.04 5.65 -92.70 -0.52 15.51 16 32 H 0.33 12.11 6.30 -92.71 -0.58 11.53 16 33 H 0.06 1.52 7.59 -2.39 -0.02 1.51 16 34 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 1.41 7.68 -2.39 -0.02 1.39 16 45 H 0.06 1.41 7.68 -2.39 -0.02 1.39 16 46 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.06 1.53 7.60 -2.38 -0.02 1.51 16 Total: -1.00 -68.29 352.38 3.10 -65.19 By element: Atomic # 1 Polarization: 50.32 SS G_CDS: -0.11 Total: 50.22 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.44 Total: -1.95 kcal Atomic # 7 Polarization: -146.53 SS G_CDS: -4.26 Total: -150.79 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.03 Total: 37.33 kcal Total: -68.29 3.10 -65.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163840510.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.941 kcal (2) G-P(sol) polarization free energy of solvation -68.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds