Wall clock time and date at job start Tue Mar 31 2020 15:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31798 * 119.08080 * 2 1 4 4 C 1.32540 * 121.01042 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.39918 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47219 * 95.02633 * 5 4 3 7 7 C 1.53004 * 109.47166 * 215.02119 * 5 4 3 8 8 C 1.38114 * 119.20062 * 0.02562 * 4 3 2 9 9 C 1.39620 * 118.33558 * 0.02562 * 8 4 3 10 10 N 1.38541 * 120.53635 * 179.97438 * 9 8 4 11 11 C 1.46504 * 120.00244 * 184.99862 * 10 9 8 12 12 C 1.50701 * 109.47173 * 269.99809 * 11 10 9 13 13 H 1.07999 * 119.99726 * 359.97438 * 12 11 10 14 14 C 1.37866 * 120.00214 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00714 * 180.02562 * 14 12 11 16 16 Si 1.86810 * 119.99939 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46722 * 89.99987 * 16 14 12 18 18 H 1.48503 * 109.47095 * 209.99957 * 16 14 12 19 19 H 1.48503 * 109.47042 * 330.00162 * 16 14 12 20 20 C 1.46500 * 119.99891 * 4.99630 * 10 9 8 21 21 C 1.50700 * 109.47380 * 270.00609 * 20 10 9 22 22 C 1.38677 * 120.41537 * 270.26287 * 21 20 10 23 23 C 1.38625 * 118.42126 * 180.22222 * 22 21 20 24 24 C 1.38223 * 119.15978 * 359.46985 * 23 22 21 25 25 N 1.31856 * 120.76567 * 0.30777 * 24 23 22 26 26 C 1.31884 * 121.72562 * 359.97275 * 25 24 23 27 27 N 1.31750 * 119.08769 * 180.25428 * 2 1 3 28 28 H 1.08998 * 109.47102 * 90.00394 * 1 2 3 29 29 H 1.09003 * 109.46883 * 209.99506 * 1 2 3 30 30 H 1.08994 * 109.47617 * 330.00004 * 1 2 3 31 31 H 1.08997 * 109.47346 * 335.02087 * 5 4 3 32 32 H 1.08997 * 109.47407 * 59.99492 * 6 5 4 33 33 H 1.09001 * 109.47463 * 180.02562 * 6 5 4 34 34 H 1.09012 * 109.46816 * 299.99866 * 6 5 4 35 35 H 1.09010 * 109.46791 * 60.00244 * 7 5 4 36 36 H 1.09001 * 109.46900 * 180.02562 * 7 5 4 37 37 H 1.08997 * 109.46962 * 300.00203 * 7 5 4 38 38 H 1.08000 * 120.83612 * 180.02562 * 8 4 3 39 39 H 1.09001 * 109.47175 * 29.99936 * 11 10 9 40 40 H 1.08999 * 109.47090 * 149.99779 * 11 10 9 41 41 H 0.96992 * 120.00539 * 180.02562 * 15 14 12 42 42 H 1.08993 * 109.47314 * 149.99854 * 20 10 9 43 43 H 1.09007 * 109.46809 * 29.99993 * 20 10 9 44 44 H 1.08003 * 120.78603 * 359.97006 * 22 21 20 45 45 H 1.08002 * 120.42343 * 179.75479 * 23 22 21 46 46 H 1.08005 * 119.61951 * 180.28273 * 24 23 22 47 47 H 1.07998 * 119.61861 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1518 0.0000 4 6 3.4723 1.1965 0.0005 5 6 4.1906 2.5212 -0.0001 6 6 4.5443 2.9103 1.4367 7 6 5.4726 2.4059 -0.8273 8 6 4.1863 0.0142 0.0005 9 6 3.4769 -1.1884 -0.0006 10 7 4.1471 -2.4009 -0.0012 11 6 3.3953 -3.6534 -0.1129 12 6 3.0287 -4.1437 1.2642 13 1 3.3263 -3.5791 2.1354 14 6 2.3134 -5.3130 1.4118 15 7 1.9930 -5.7408 2.6135 16 14 1.7980 -6.2893 -0.0952 17 1 2.8581 -7.2723 -0.4344 18 1 0.5299 -7.0074 0.1901 19 1 1.5964 -5.3641 -1.2392 20 6 5.6076 -2.4307 0.1099 21 6 6.2173 -2.3799 -1.2674 22 6 6.4760 -3.5506 -1.9642 23 6 7.0418 -3.4559 -3.2262 24 6 7.3171 -2.2063 -3.7488 25 7 7.0533 -1.1138 -3.0593 26 6 6.5205 -1.1661 -1.8541 27 7 2.1475 -1.1513 -0.0051 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 3.5452 3.2844 -0.4348 32 1 5.1897 2.1471 1.8715 33 1 5.0635 3.8687 1.4364 34 1 3.6309 2.9925 2.0262 35 1 5.2206 2.1287 -1.8510 36 1 5.9924 3.3640 -0.8273 37 1 6.1180 1.6427 -0.3926 38 1 5.2663 0.0198 0.0013 39 1 2.4874 -3.4819 -0.6911 40 1 4.0091 -4.4021 -0.6137 41 1 1.4901 -6.5636 2.7173 42 1 5.9153 -3.3489 0.6099 43 1 5.9455 -1.5710 0.6886 44 1 6.2459 -4.5134 -1.5323 45 1 7.2605 -4.3471 -3.7958 46 1 7.7537 -2.1237 -4.7333 47 1 6.3182 -0.2497 -1.3197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164004490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:37 Heat of formation + Delta-G solvation = 84.749549 kcal Electronic energy + Delta-G solvation = -28237.945518 eV Core-core repulsion = 24613.797566 eV Total energy + Delta-G solvation = -3624.147953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.74340 -40.03279 -37.05212 -35.95492 -33.06835 -32.80194 -31.92731 -31.48536 -31.06556 -28.62805 -27.64704 -26.95733 -25.94757 -24.15405 -23.41626 -22.62010 -22.20895 -20.55342 -19.62022 -17.36549 -17.26200 -16.98503 -16.67048 -16.00547 -15.55163 -14.92900 -14.79642 -14.60921 -14.28694 -14.14531 -13.84711 -13.55493 -13.50716 -13.20668 -13.12989 -13.00327 -12.56542 -12.31767 -12.21990 -12.05450 -11.92279 -11.73561 -11.66102 -11.35452 -11.24586 -11.07114 -10.91817 -10.67676 -10.49249 -10.03835 -9.92961 -9.79407 -9.53356 -9.44762 -9.06794 -8.97536 -8.64865 -8.50396 -7.24075 -6.13799 -4.12412 1.06228 1.29102 1.56109 1.96630 3.19843 3.28441 3.32990 3.43769 3.92908 4.29869 4.33492 4.34147 4.40658 4.65863 4.79425 4.82544 4.95680 5.01317 5.03310 5.14041 5.18432 5.19569 5.31875 5.40040 5.49527 5.59533 5.62554 5.70557 5.73062 5.78675 5.84236 5.89864 5.91635 5.95271 5.97432 6.11046 6.13622 6.23103 6.25912 6.30097 6.36607 6.51218 6.68585 6.74843 7.02597 7.36268 7.53300 7.87306 7.94655 8.03300 8.45011 8.89215 8.94217 9.45927 10.99535 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008376 B = 0.005848 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.192589 B = 4786.677485 C = 7196.133684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.356 3.644 3 N -0.576 5.576 4 C 0.206 3.794 5 C -0.044 4.044 6 C -0.139 4.139 7 C -0.146 4.146 8 C -0.314 4.314 9 C 0.455 3.545 10 N -0.567 5.567 11 C 0.226 3.774 12 C -0.523 4.523 13 H 0.074 0.926 14 C 0.075 3.925 15 N -0.896 5.896 16 Si 0.870 3.130 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.166 3.834 21 C -0.152 4.152 22 C -0.057 4.057 23 C -0.175 4.175 24 C 0.092 3.908 25 N -0.486 5.486 26 C 0.106 3.894 27 N -0.554 5.554 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.134 0.866 39 H 0.044 0.956 40 H 0.021 0.979 41 H 0.264 0.736 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.138 0.862 45 H 0.133 0.867 46 H 0.152 0.848 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.849 11.330 -8.745 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.086 3.914 3 N -0.297 5.297 4 C 0.063 3.937 5 C -0.063 4.063 6 C -0.197 4.197 7 C -0.203 4.203 8 C -0.343 4.343 9 C 0.211 3.789 10 N -0.274 5.274 11 C 0.106 3.894 12 C -0.562 4.562 13 H 0.092 0.908 14 C -0.127 4.127 15 N -0.535 5.535 16 Si 0.697 3.303 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.189 1.189 20 C 0.041 3.959 21 C -0.155 4.155 22 C -0.084 4.084 23 C -0.194 4.194 24 C -0.065 4.065 25 N -0.195 5.195 26 C -0.051 4.051 27 N -0.278 5.278 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.151 0.849 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.156 0.844 45 H 0.151 0.849 46 H 0.170 0.830 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.066 11.746 -9.009 16.858 hybrid contribution 0.364 -1.756 -0.295 1.818 sum 8.430 9.990 -9.304 16.044 Atomic orbital electron populations 1.20486 0.86578 1.03773 1.03135 1.22851 0.97408 0.82725 0.88388 1.67991 1.09092 1.30111 1.22465 1.21069 0.89449 0.94249 0.88916 1.20015 0.96030 0.93035 0.97250 1.21772 1.01812 1.01225 0.94878 1.21919 0.96396 1.02019 0.99977 1.21902 1.01365 0.92650 1.18380 1.18480 0.88340 0.86082 0.86006 1.46669 1.03877 1.04077 1.72772 1.19706 0.91694 0.79681 0.98363 1.21272 1.35483 1.07681 0.91725 0.90807 1.24806 0.95205 0.97113 0.95598 1.69886 1.39324 1.22728 1.21525 0.86939 0.78712 0.80573 0.84045 1.20236 1.20895 1.18901 1.20280 0.79734 1.04540 0.91302 1.21523 1.00031 0.94452 0.99512 1.21632 0.93955 0.98932 0.93887 1.22141 1.01199 0.99384 0.96723 1.22732 0.96471 0.88062 0.99248 1.67687 1.11890 1.32515 1.07368 1.22853 0.93772 0.97233 0.91241 1.67930 1.07728 1.30076 1.22063 0.90349 0.89593 0.90211 0.89295 0.92436 0.92026 0.92262 0.92208 0.91892 0.92354 0.84893 0.93787 0.96162 0.92562 0.88130 0.89981 0.84444 0.84872 0.83045 0.82892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.32 36.01 0.37 -0.86 16 2 C 0.36 6.78 7.64 -157.23 -1.20 5.57 16 3 N -0.58 -10.28 10.27 -7.07 -0.07 -10.35 16 4 C 0.21 3.32 5.82 -82.33 -0.48 2.84 16 5 C -0.04 -0.53 3.27 -91.77 -0.30 -0.83 16 6 C -0.14 -1.50 9.17 37.16 0.34 -1.16 16 7 C -0.15 -1.49 8.56 37.16 0.32 -1.17 16 8 C -0.31 -5.24 7.68 -39.11 -0.30 -5.54 16 9 C 0.45 9.16 7.38 -154.78 -1.14 8.02 16 10 N -0.57 -11.29 2.54 -176.40 -0.45 -11.74 16 11 C 0.23 5.24 4.23 -5.19 -0.02 5.21 16 12 C -0.52 -14.28 9.94 -34.44 -0.34 -14.63 16 13 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 14 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 15 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 16 Si 0.87 20.78 27.47 -169.99 -4.67 16.11 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 20 C 0.17 2.61 5.35 -5.19 -0.03 2.58 16 21 C -0.15 -2.17 5.48 -104.48 -0.57 -2.74 16 22 C -0.06 -0.77 9.86 -39.28 -0.39 -1.16 16 23 C -0.17 -2.02 10.11 -39.44 -0.40 -2.41 16 24 C 0.09 1.10 11.18 -17.55 -0.20 0.90 16 25 N -0.49 -6.81 10.36 -13.25 -0.14 -6.95 16 26 C 0.11 1.48 10.39 -17.55 -0.18 1.30 16 27 N -0.55 -12.03 9.21 -9.96 -0.09 -12.12 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.58 5.75 -51.93 -0.30 0.28 16 38 H 0.13 1.87 2.61 -52.49 -0.14 1.73 16 39 H 0.04 1.11 6.53 -51.93 -0.34 0.77 16 40 H 0.02 0.45 7.50 -51.93 -0.39 0.06 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.10 1.57 8.03 -51.93 -0.42 1.16 16 43 H 0.08 1.13 6.40 -51.93 -0.33 0.80 16 44 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 45 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 47 H 0.15 1.96 4.60 -52.49 -0.24 1.72 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -33.07 381.65 -10.33 -43.40 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.82 Total: 4.03 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -4.62 Total: -2.07 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: 0.02 Total: -67.21 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.07 -10.33 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.148 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds