Wall clock time and date at job start Tue Mar 31 2020 15:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31798 * 119.08080 * 2 1 4 4 C 1.32540 * 121.01042 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.39918 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47219 * 95.02633 * 5 4 3 7 7 C 1.53004 * 109.47166 * 215.02119 * 5 4 3 8 8 C 1.38114 * 119.20062 * 0.02562 * 4 3 2 9 9 C 1.39620 * 118.33558 * 0.02562 * 8 4 3 10 10 N 1.38541 * 120.53635 * 179.97438 * 9 8 4 11 11 C 1.46504 * 120.00244 * 184.99862 * 10 9 8 12 12 C 1.50701 * 109.47173 * 269.99809 * 11 10 9 13 13 H 1.07999 * 119.99726 * 359.97438 * 12 11 10 14 14 C 1.37866 * 120.00214 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00714 * 180.02562 * 14 12 11 16 16 Si 1.86810 * 119.99939 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46722 * 89.99987 * 16 14 12 18 18 H 1.48503 * 109.47095 * 209.99957 * 16 14 12 19 19 H 1.48503 * 109.47042 * 330.00162 * 16 14 12 20 20 C 1.46500 * 119.99891 * 4.99630 * 10 9 8 21 21 C 1.50700 * 109.47380 * 270.00609 * 20 10 9 22 22 C 1.38677 * 120.41537 * 270.26287 * 21 20 10 23 23 C 1.38625 * 118.42126 * 180.22222 * 22 21 20 24 24 C 1.38223 * 119.15978 * 359.46985 * 23 22 21 25 25 N 1.31856 * 120.76567 * 0.30777 * 24 23 22 26 26 C 1.31884 * 121.72562 * 359.97275 * 25 24 23 27 27 N 1.31750 * 119.08769 * 180.25428 * 2 1 3 28 28 H 1.08998 * 109.47102 * 90.00394 * 1 2 3 29 29 H 1.09003 * 109.46883 * 209.99506 * 1 2 3 30 30 H 1.08994 * 109.47617 * 330.00004 * 1 2 3 31 31 H 1.08997 * 109.47346 * 335.02087 * 5 4 3 32 32 H 1.08997 * 109.47407 * 59.99492 * 6 5 4 33 33 H 1.09001 * 109.47463 * 180.02562 * 6 5 4 34 34 H 1.09012 * 109.46816 * 299.99866 * 6 5 4 35 35 H 1.09010 * 109.46791 * 60.00244 * 7 5 4 36 36 H 1.09001 * 109.46900 * 180.02562 * 7 5 4 37 37 H 1.08997 * 109.46962 * 300.00203 * 7 5 4 38 38 H 1.08000 * 120.83612 * 180.02562 * 8 4 3 39 39 H 1.09001 * 109.47175 * 29.99936 * 11 10 9 40 40 H 1.08999 * 109.47090 * 149.99779 * 11 10 9 41 41 H 0.96992 * 120.00539 * 180.02562 * 15 14 12 42 42 H 1.08993 * 109.47314 * 149.99854 * 20 10 9 43 43 H 1.09007 * 109.46809 * 29.99993 * 20 10 9 44 44 H 1.08003 * 120.78603 * 359.97006 * 22 21 20 45 45 H 1.08002 * 120.42343 * 179.75479 * 23 22 21 46 46 H 1.08005 * 119.61951 * 180.28273 * 24 23 22 47 47 H 1.07998 * 119.61861 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1518 0.0000 4 6 3.4723 1.1965 0.0005 5 6 4.1906 2.5212 -0.0001 6 6 4.5443 2.9103 1.4367 7 6 5.4726 2.4059 -0.8273 8 6 4.1863 0.0142 0.0005 9 6 3.4769 -1.1884 -0.0006 10 7 4.1471 -2.4009 -0.0012 11 6 3.3953 -3.6534 -0.1129 12 6 3.0287 -4.1437 1.2642 13 1 3.3263 -3.5791 2.1354 14 6 2.3134 -5.3130 1.4118 15 7 1.9930 -5.7408 2.6135 16 14 1.7980 -6.2893 -0.0952 17 1 2.8581 -7.2723 -0.4344 18 1 0.5299 -7.0074 0.1901 19 1 1.5964 -5.3641 -1.2392 20 6 5.6076 -2.4307 0.1099 21 6 6.2173 -2.3799 -1.2674 22 6 6.4760 -3.5506 -1.9642 23 6 7.0418 -3.4559 -3.2262 24 6 7.3171 -2.2063 -3.7488 25 7 7.0533 -1.1138 -3.0593 26 6 6.5205 -1.1661 -1.8541 27 7 2.1475 -1.1513 -0.0051 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 3.5452 3.2844 -0.4348 32 1 5.1897 2.1471 1.8715 33 1 5.0635 3.8687 1.4364 34 1 3.6309 2.9925 2.0262 35 1 5.2206 2.1287 -1.8510 36 1 5.9924 3.3640 -0.8273 37 1 6.1180 1.6427 -0.3926 38 1 5.2663 0.0198 0.0013 39 1 2.4874 -3.4819 -0.6911 40 1 4.0091 -4.4021 -0.6137 41 1 1.4901 -6.5636 2.7173 42 1 5.9153 -3.3489 0.6099 43 1 5.9455 -1.5710 0.6886 44 1 6.2459 -4.5134 -1.5323 45 1 7.2605 -4.3471 -3.7958 46 1 7.7537 -2.1237 -4.7333 47 1 6.3182 -0.2497 -1.3197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164004490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:36 Heat of formation + Delta-G solvation = 66.142058 kcal Electronic energy + Delta-G solvation = -28238.752400 eV Core-core repulsion = 24613.797566 eV Total energy + Delta-G solvation = -3624.954834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.08194 -41.08533 -38.45818 -37.07428 -34.92565 -34.15803 -33.02070 -32.70025 -32.55157 -30.17154 -28.98423 -27.90288 -27.28764 -25.49248 -24.44714 -24.09841 -23.53511 -21.87042 -20.85094 -19.10674 -18.68274 -18.44177 -17.84167 -17.14556 -16.73771 -16.42437 -16.23705 -15.95044 -15.65973 -15.34586 -15.04504 -14.73777 -14.62915 -14.47732 -14.40045 -14.09602 -14.00114 -13.63231 -13.53137 -13.31698 -13.21533 -13.13792 -12.85907 -12.59688 -12.48559 -12.35525 -12.21806 -12.05560 -11.91642 -11.78435 -11.48122 -11.29507 -10.80286 -10.79716 -10.52787 -10.36291 -10.02968 -9.96062 -8.75425 -8.31192 -6.35027 0.07142 0.18432 0.30585 0.54110 1.30365 1.35490 1.45358 2.05147 2.31141 2.88883 2.96861 3.03289 3.11562 3.34421 3.45733 3.70894 3.73907 3.87811 4.01837 4.04629 4.10275 4.16738 4.26642 4.35292 4.38939 4.53874 4.59391 4.62324 4.64220 4.70982 4.73025 4.81416 4.84263 4.86922 4.90063 4.96079 4.99624 5.09892 5.16299 5.18867 5.30389 5.37458 5.40215 5.46163 5.60837 5.73306 5.81020 6.16881 6.44114 6.61818 6.66421 6.97270 7.27582 7.50461 8.85796 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008376 B = 0.005848 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.192589 B = 4786.677485 C = 7196.133684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.337 3.663 3 N -0.580 5.580 4 C 0.201 3.799 5 C -0.041 4.041 6 C -0.135 4.135 7 C -0.141 4.141 8 C -0.307 4.307 9 C 0.429 3.571 10 N -0.577 5.577 11 C 0.243 3.757 12 C -0.520 4.520 13 H 0.025 0.975 14 C 0.017 3.983 15 N -0.946 5.946 16 Si 0.941 3.059 17 H -0.254 1.254 18 H -0.284 1.284 19 H -0.257 1.257 20 C 0.167 3.833 21 C -0.163 4.163 22 C -0.072 4.072 23 C -0.167 4.167 24 C 0.090 3.910 25 N -0.504 5.504 26 C 0.100 3.900 27 N -0.599 5.599 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.157 0.843 39 H 0.025 0.975 40 H 0.038 0.962 41 H 0.267 0.733 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.139 0.861 45 H 0.165 0.835 46 H 0.185 0.815 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.453 12.282 -11.299 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.068 3.932 3 N -0.301 5.301 4 C 0.058 3.942 5 C -0.060 4.060 6 C -0.193 4.193 7 C -0.199 4.199 8 C -0.335 4.335 9 C 0.186 3.814 10 N -0.285 5.285 11 C 0.120 3.880 12 C -0.559 4.559 13 H 0.043 0.957 14 C -0.181 4.181 15 N -0.586 5.586 16 Si 0.765 3.235 17 H -0.179 1.179 18 H -0.210 1.210 19 H -0.181 1.181 20 C 0.043 3.957 21 C -0.166 4.166 22 C -0.098 4.098 23 C -0.187 4.187 24 C -0.066 4.066 25 N -0.213 5.213 26 C -0.056 4.056 27 N -0.325 5.325 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.175 0.825 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.157 0.843 45 H 0.183 0.817 46 H 0.202 0.798 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.704 12.735 -11.567 19.752 hybrid contribution -0.091 -1.942 0.538 2.017 sum 9.613 10.793 -11.029 18.181 Atomic orbital electron populations 1.20556 0.84578 1.04039 1.04341 1.23486 0.98883 0.82578 0.88206 1.68111 1.10072 1.29390 1.22481 1.21854 0.89143 0.95976 0.87217 1.20155 0.96602 0.90669 0.98572 1.21766 1.01364 1.02694 0.93492 1.21907 0.95440 1.03646 0.98883 1.22088 1.02450 0.91532 1.17384 1.18898 0.88500 0.87120 0.86831 1.46642 1.05235 1.03013 1.73597 1.19265 0.91778 0.81580 0.95329 1.21426 1.35053 1.07120 0.92313 0.95674 1.25711 0.95162 0.98379 0.98827 1.70047 1.40763 1.23623 1.24182 0.85810 0.78667 0.79164 0.79884 1.17869 1.20954 1.18093 1.20381 0.77554 1.04884 0.92836 1.21340 1.01160 0.95303 0.98818 1.21833 0.94424 0.98703 0.94862 1.22470 0.99696 1.00593 0.95911 1.23335 0.95438 0.87666 1.00205 1.67729 1.12478 1.33662 1.07419 1.22896 0.93986 0.97201 0.91552 1.67909 1.09020 1.31731 1.23806 0.88582 0.90869 0.88260 0.88841 0.92713 0.89051 0.93728 0.93133 0.89226 0.92071 0.82536 0.95698 0.94371 0.92430 0.88781 0.88562 0.84270 0.81738 0.79838 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.36 10.32 71.24 0.73 -1.62 16 2 C 0.34 13.10 7.64 138.76 1.06 14.16 16 3 N -0.58 -20.62 10.27 -176.28 -1.81 -22.43 16 4 C 0.20 6.33 5.82 42.42 0.25 6.58 16 5 C -0.04 -0.91 3.27 -11.54 -0.04 -0.94 16 6 C -0.14 -2.64 9.17 71.98 0.66 -1.98 16 7 C -0.14 -2.51 8.56 71.98 0.62 -1.89 16 8 C -0.31 -10.16 7.68 22.57 0.17 -9.99 16 9 C 0.43 17.69 7.38 133.16 0.98 18.67 16 10 N -0.58 -23.49 2.54 -712.01 -1.81 -25.30 16 11 C 0.24 11.46 4.23 85.63 0.36 11.82 16 12 C -0.52 -29.62 9.94 25.60 0.25 -29.37 16 13 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 14 C 0.02 0.98 5.47 84.65 0.46 1.45 16 15 N -0.95 -58.68 13.96 21.44 0.30 -58.38 16 16 Si 0.94 43.31 27.47 68.60 1.88 45.19 16 17 H -0.25 -10.74 7.11 99.48 0.71 -10.04 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.26 -11.42 6.54 99.48 0.65 -10.77 16 20 C 0.17 5.27 5.35 85.63 0.46 5.73 16 21 C -0.16 -4.51 5.48 -19.77 -0.11 -4.62 16 22 C -0.07 -1.80 9.86 22.47 0.22 -1.58 16 23 C -0.17 -3.35 10.11 22.36 0.23 -3.13 16 24 C 0.09 1.87 11.18 84.69 0.95 2.82 16 25 N -0.50 -13.00 10.36 -195.84 -2.03 -15.03 16 26 C 0.10 2.65 10.39 84.67 0.88 3.53 16 27 N -0.60 -26.90 9.21 -185.44 -1.71 -28.61 16 28 H 0.10 2.55 8.14 -2.39 -0.02 2.54 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.04 0.99 8.14 -2.38 -0.02 0.98 16 35 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.05 5.75 -2.39 -0.01 1.04 16 38 H 0.16 4.26 2.61 -2.91 -0.01 4.25 16 39 H 0.02 1.28 6.53 -2.39 -0.02 1.26 16 40 H 0.04 1.66 7.50 -2.39 -0.02 1.65 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.09 3.03 8.03 -2.39 -0.02 3.01 16 43 H 0.10 2.67 6.40 -2.38 -0.02 2.65 16 44 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 45 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 47 H 0.16 3.81 4.60 -2.91 -0.01 3.80 16 Total: -1.00 -75.12 381.65 3.89 -71.22 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.92 Total: 23.69 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 8.14 Total: 9.65 kcal Atomic # 7 Polarization: -142.69 SS G_CDS: -7.06 Total: -149.75 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -75.12 3.89 -71.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.367 kcal (2) G-P(sol) polarization free energy of solvation -75.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds