Wall clock time and date at job start Tue Mar 31 2020 15:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47407 * 2 1 4 4 C 1.52997 * 109.47706 * 239.99662 * 2 1 3 5 5 C 1.50701 * 109.47122 * 119.99242 * 2 1 3 6 6 C 1.38633 * 120.39956 * 74.99701 * 5 2 1 7 7 C 1.38577 * 118.55790 * 180.02562 * 6 5 2 8 8 N 1.32288 * 119.19998 * 0.02562 * 7 6 5 9 9 C 1.32478 * 120.74319 * 359.97438 * 8 7 6 10 10 N 1.38399 * 119.21705 * 180.02562 * 9 8 7 11 11 C 1.46501 * 119.99932 * 175.02656 * 10 9 8 12 12 C 1.50706 * 109.47266 * 84.44731 * 11 10 9 13 13 H 1.08000 * 119.99584 * 354.60391 * 12 11 10 14 14 C 1.37872 * 119.99986 * 174.60295 * 12 11 10 15 15 N 1.31515 * 120.00341 * 5.60632 * 14 12 11 16 16 Si 1.86800 * 119.99839 * 185.60487 * 14 12 11 17 17 H 1.48504 * 109.47205 * 90.00256 * 16 14 12 18 18 H 1.48503 * 109.47100 * 210.00255 * 16 14 12 19 19 H 1.48507 * 109.47107 * 330.00093 * 16 14 12 20 20 C 1.46501 * 120.00485 * 355.02261 * 10 9 8 21 21 C 1.50698 * 109.47398 * 270.00626 * 20 10 9 22 22 C 1.38675 * 120.41311 * 269.71635 * 21 20 10 23 23 C 1.38637 * 118.41653 * 179.77920 * 22 21 20 24 24 C 1.38225 * 119.15817 * 0.51674 * 23 22 21 25 25 N 1.31851 * 120.76508 * 359.72574 * 24 23 22 26 26 C 1.31884 * 121.72858 * 359.97438 * 25 24 23 27 27 N 1.32260 * 120.40646 * 255.30382 * 5 2 1 28 28 H 1.08997 * 109.46872 * 300.00357 * 1 2 3 29 29 H 1.09003 * 109.46447 * 60.00198 * 1 2 3 30 30 H 1.08991 * 109.46874 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47315 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46730 * 299.99670 * 3 2 1 33 33 H 1.09004 * 109.47268 * 59.99290 * 3 2 1 34 34 H 1.09000 * 109.46576 * 300.00162 * 4 2 1 35 35 H 1.08992 * 109.47260 * 59.99785 * 4 2 1 36 36 H 1.08994 * 109.47591 * 180.02562 * 4 2 1 37 37 H 1.07999 * 120.71610 * 0.02562 * 6 5 2 38 38 H 1.08007 * 120.40019 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.47197 * 324.44463 * 11 10 9 40 40 H 1.09004 * 109.47589 * 204.44586 * 11 10 9 41 41 H 0.96997 * 119.99797 * 179.97438 * 15 14 12 42 42 H 1.09004 * 109.46378 * 30.00423 * 20 10 9 43 43 H 1.09005 * 109.47217 * 149.99932 * 20 10 9 44 44 H 1.07998 * 120.79301 * 0.02562 * 22 21 20 45 45 H 1.07998 * 120.41610 * 180.21947 * 23 22 21 46 46 H 1.08004 * 119.61577 * 179.74417 * 24 23 22 47 47 H 1.07997 * 119.62167 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7102 1.2306 6 6 1.9743 -2.0928 1.3154 7 6 2.4464 -2.7063 2.4648 8 7 2.9349 -1.9592 3.4411 9 6 2.9761 -0.6399 3.3285 10 7 3.4942 0.1111 4.3692 11 6 3.6489 1.5603 4.2204 12 6 2.3464 2.2415 4.5531 13 1 1.4662 1.6512 4.7610 14 6 2.2785 3.6180 4.5920 15 7 3.3185 4.3381 4.2321 16 14 0.7094 4.4601 5.1559 17 1 0.7602 4.6690 6.6253 18 1 0.5793 5.7726 4.4735 19 1 -0.4589 3.6082 4.8171 20 6 3.8878 -0.5430 5.6195 21 6 2.7121 -0.5747 6.5617 22 6 2.4990 0.4655 7.4537 23 6 1.4019 0.3960 8.2984 24 6 0.5691 -0.7051 8.2314 25 7 0.8054 -1.6784 7.3738 26 6 1.8358 -1.6430 6.5513 27 7 2.5283 -0.0219 2.2452 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2490 35 1 1.6769 -0.2076 -2.1391 36 1 3.1301 -0.7217 -1.2489 37 1 1.5700 -2.6788 0.5033 38 1 2.4151 -3.7815 2.5626 39 1 3.9282 1.7924 3.1926 40 1 4.4270 1.9141 4.8970 41 1 3.2705 5.3065 4.2592 42 1 4.2128 -1.5620 5.4097 43 1 4.7061 0.0122 6.0781 44 1 3.1694 1.3116 7.4868 45 1 1.2033 1.1898 9.0032 46 1 -0.2854 -0.7689 8.8889 47 1 1.9975 -2.4592 5.8628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164007050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:55 Heat of formation + Delta-G solvation = 87.423494 kcal Electronic energy + Delta-G solvation = -28576.459866 eV Core-core repulsion = 24952.427864 eV Total energy + Delta-G solvation = -3624.032002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54683 -39.65881 -37.19125 -35.82161 -32.96692 -32.54407 -32.00755 -31.14605 -30.00745 -27.56556 -27.14044 -26.93919 -25.45308 -23.98660 -23.31533 -22.98930 -21.89240 -20.86284 -19.03551 -16.94418 -16.78458 -16.44427 -16.41418 -15.76343 -15.23809 -14.98358 -14.68690 -14.40069 -14.26504 -13.87693 -13.63203 -13.49564 -13.27261 -13.12310 -12.95096 -12.54792 -12.31725 -12.14962 -11.90187 -11.80645 -11.39863 -11.32496 -11.19534 -10.97424 -10.89385 -10.76976 -10.75743 -10.64471 -10.27517 -10.05843 -9.97090 -9.79455 -9.30366 -9.18721 -9.04055 -8.62191 -8.45971 -8.27145 -7.07735 -6.04963 -4.07343 1.49387 1.75366 1.79933 1.87518 3.25490 3.33416 3.37973 3.57134 4.29993 4.40586 4.51931 4.56982 4.83220 4.85315 5.09490 5.21414 5.23769 5.27790 5.33638 5.35862 5.41914 5.49077 5.53811 5.64438 5.73121 5.78152 5.82865 5.90038 5.94257 6.01943 6.05487 6.12356 6.15049 6.21025 6.27455 6.29082 6.43791 6.56857 6.59173 6.72421 6.83935 6.97763 7.03148 7.15181 7.39259 7.63251 7.77706 7.92654 8.22070 8.32873 8.37055 8.91375 9.10658 9.55710 11.01318 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009328 B = 0.005906 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.046375 B = 4739.775814 C = 6503.530848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.020 4.020 3 C -0.127 4.127 4 C -0.135 4.135 5 C 0.228 3.772 6 C -0.312 4.312 7 C 0.183 3.817 8 N -0.588 5.588 9 C 0.574 3.426 10 N -0.561 5.561 11 C 0.261 3.739 12 C -0.503 4.503 13 H 0.053 0.947 14 C 0.064 3.936 15 N -0.895 5.895 16 Si 0.886 3.114 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.176 3.824 21 C -0.140 4.140 22 C -0.036 4.036 23 C -0.180 4.180 24 C 0.087 3.913 25 N -0.497 5.497 26 C 0.112 3.888 27 N -0.530 5.530 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.130 0.870 38 H 0.154 0.846 39 H 0.043 0.957 40 H 0.033 0.967 41 H 0.261 0.739 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.128 0.872 46 H 0.146 0.854 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 -10.776 -2.900 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 C -0.184 4.184 4 C -0.193 4.193 5 C 0.076 3.924 6 C -0.339 4.339 7 C 0.016 3.984 8 N -0.312 5.312 9 C 0.219 3.781 10 N -0.272 5.272 11 C 0.141 3.859 12 C -0.543 4.543 13 H 0.071 0.929 14 C -0.138 4.138 15 N -0.534 5.534 16 Si 0.714 3.286 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.052 3.948 21 C -0.144 4.144 22 C -0.063 4.063 23 C -0.200 4.200 24 C -0.070 4.070 25 N -0.206 5.206 26 C -0.045 4.045 27 N -0.250 5.250 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.172 0.828 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.154 0.846 45 H 0.146 0.854 46 H 0.164 0.836 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.148 -10.574 -1.979 10.819 hybrid contribution -0.876 0.952 -0.304 1.328 sum -2.024 -9.623 -2.283 10.095 Atomic orbital electron populations 1.21819 0.93273 1.01727 1.02364 1.19513 0.95694 0.96368 0.90512 1.21670 1.01237 0.93470 1.02067 1.21881 1.01217 0.99999 0.96196 1.21236 0.88539 0.90120 0.92462 1.22086 1.13332 0.96357 1.02147 1.22648 0.88815 0.99307 0.87675 1.67848 1.24967 1.05847 1.32575 1.19345 0.87224 0.84583 0.86924 1.46843 1.62424 1.08689 1.09265 1.19342 0.96959 0.71148 0.98408 1.21297 0.95775 0.90880 1.46309 0.92893 1.24823 0.96131 0.97204 0.95596 1.69931 1.29803 1.05881 1.47810 0.86676 0.84146 0.78987 0.78749 1.20732 1.21231 1.20151 1.20154 0.92855 0.99122 0.82710 1.21314 0.99973 0.95543 0.97546 1.21543 0.96228 0.96608 0.91928 1.22067 0.96754 0.99677 1.01486 1.22601 0.98266 0.90092 0.96052 1.67648 1.19126 1.28472 1.05361 1.22692 0.89370 0.97323 0.95084 1.67957 1.16170 1.39808 1.01097 0.92139 0.92044 0.92685 0.92683 0.93554 0.90441 0.92392 0.92098 0.92569 0.85256 0.82830 0.93926 0.94877 0.92884 0.89331 0.89993 0.84591 0.85402 0.83644 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.41 37.16 0.31 -1.48 16 2 C -0.02 -0.29 0.88 -155.66 -0.14 -0.43 16 3 C -0.13 -2.10 7.84 37.16 0.29 -1.81 16 4 C -0.14 -1.56 8.10 37.16 0.30 -1.26 16 5 C 0.23 3.96 5.56 -82.26 -0.46 3.50 16 6 C -0.31 -4.62 9.21 -39.31 -0.36 -4.98 16 7 C 0.18 2.74 11.30 -17.23 -0.19 2.55 16 8 N -0.59 -10.56 8.64 -13.93 -0.12 -10.68 16 9 C 0.57 11.89 8.13 -322.82 -2.62 9.27 16 10 N -0.56 -11.76 2.55 -178.78 -0.46 -12.21 16 11 C 0.26 6.34 5.11 -5.19 -0.03 6.31 16 12 C -0.50 -13.34 9.35 -34.44 -0.32 -13.66 16 13 H 0.05 1.51 7.82 -52.49 -0.41 1.10 16 14 C 0.06 1.73 5.45 -17.82 -0.10 1.63 16 15 N -0.89 -25.15 13.30 55.43 0.74 -24.41 16 16 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.18 3.09 5.64 -5.19 -0.03 3.06 16 21 C -0.14 -2.50 5.48 -104.48 -0.57 -3.08 16 22 C -0.04 -0.64 9.86 -39.27 -0.39 -1.03 16 23 C -0.18 -2.89 10.11 -39.44 -0.40 -3.29 16 24 C 0.09 1.40 11.18 -17.55 -0.20 1.20 16 25 N -0.50 -8.96 10.36 -13.26 -0.14 -9.10 16 26 C 0.11 2.01 10.86 -17.55 -0.19 1.82 16 27 N -0.53 -11.17 8.03 -10.15 -0.08 -11.25 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.56 7.88 -51.93 -0.41 1.15 16 34 H 0.06 0.58 6.79 -51.93 -0.35 0.23 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.13 1.52 6.83 -52.49 -0.36 1.16 16 38 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.04 1.15 7.62 -51.93 -0.40 0.76 16 40 H 0.03 0.83 7.83 -51.93 -0.41 0.42 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.09 1.43 7.21 -51.93 -0.37 1.05 16 43 H 0.08 1.32 7.81 -51.93 -0.41 0.91 16 44 H 0.14 2.38 8.06 -52.49 -0.42 1.96 16 45 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 47 H 0.15 2.64 7.61 -52.49 -0.40 2.24 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -30.65 391.13 -11.57 -42.22 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -7.30 Total: 4.74 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -5.09 Total: -1.67 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -0.06 Total: -67.64 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.65 -11.57 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164007050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.648 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds