Wall clock time and date at job start Tue Mar 31 2020 15:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47407 * 2 1 4 4 C 1.52997 * 109.47706 * 239.99662 * 2 1 3 5 5 C 1.50701 * 109.47122 * 119.99242 * 2 1 3 6 6 C 1.38633 * 120.39956 * 74.99701 * 5 2 1 7 7 C 1.38577 * 118.55790 * 180.02562 * 6 5 2 8 8 N 1.32288 * 119.19998 * 0.02562 * 7 6 5 9 9 C 1.32478 * 120.74319 * 359.97438 * 8 7 6 10 10 N 1.38399 * 119.21705 * 180.02562 * 9 8 7 11 11 C 1.46501 * 119.99932 * 175.02656 * 10 9 8 12 12 C 1.50706 * 109.47266 * 84.44731 * 11 10 9 13 13 H 1.08000 * 119.99584 * 354.60391 * 12 11 10 14 14 C 1.37872 * 119.99986 * 174.60295 * 12 11 10 15 15 N 1.31515 * 120.00341 * 5.60632 * 14 12 11 16 16 Si 1.86800 * 119.99839 * 185.60487 * 14 12 11 17 17 H 1.48504 * 109.47205 * 90.00256 * 16 14 12 18 18 H 1.48503 * 109.47100 * 210.00255 * 16 14 12 19 19 H 1.48507 * 109.47107 * 330.00093 * 16 14 12 20 20 C 1.46501 * 120.00485 * 355.02261 * 10 9 8 21 21 C 1.50698 * 109.47398 * 270.00626 * 20 10 9 22 22 C 1.38675 * 120.41311 * 269.71635 * 21 20 10 23 23 C 1.38637 * 118.41653 * 179.77920 * 22 21 20 24 24 C 1.38225 * 119.15817 * 0.51674 * 23 22 21 25 25 N 1.31851 * 120.76508 * 359.72574 * 24 23 22 26 26 C 1.31884 * 121.72858 * 359.97438 * 25 24 23 27 27 N 1.32260 * 120.40646 * 255.30382 * 5 2 1 28 28 H 1.08997 * 109.46872 * 300.00357 * 1 2 3 29 29 H 1.09003 * 109.46447 * 60.00198 * 1 2 3 30 30 H 1.08991 * 109.46874 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47315 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46730 * 299.99670 * 3 2 1 33 33 H 1.09004 * 109.47268 * 59.99290 * 3 2 1 34 34 H 1.09000 * 109.46576 * 300.00162 * 4 2 1 35 35 H 1.08992 * 109.47260 * 59.99785 * 4 2 1 36 36 H 1.08994 * 109.47591 * 180.02562 * 4 2 1 37 37 H 1.07999 * 120.71610 * 0.02562 * 6 5 2 38 38 H 1.08007 * 120.40019 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.47197 * 324.44463 * 11 10 9 40 40 H 1.09004 * 109.47589 * 204.44586 * 11 10 9 41 41 H 0.96997 * 119.99797 * 179.97438 * 15 14 12 42 42 H 1.09004 * 109.46378 * 30.00423 * 20 10 9 43 43 H 1.09005 * 109.47217 * 149.99932 * 20 10 9 44 44 H 1.07998 * 120.79301 * 0.02562 * 22 21 20 45 45 H 1.07998 * 120.41610 * 180.21947 * 23 22 21 46 46 H 1.08004 * 119.61577 * 179.74417 * 24 23 22 47 47 H 1.07997 * 119.62167 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7102 1.2306 6 6 1.9743 -2.0928 1.3154 7 6 2.4464 -2.7063 2.4648 8 7 2.9349 -1.9592 3.4411 9 6 2.9761 -0.6399 3.3285 10 7 3.4942 0.1111 4.3692 11 6 3.6489 1.5603 4.2204 12 6 2.3464 2.2415 4.5531 13 1 1.4662 1.6512 4.7610 14 6 2.2785 3.6180 4.5920 15 7 3.3185 4.3381 4.2321 16 14 0.7094 4.4601 5.1559 17 1 0.7602 4.6690 6.6253 18 1 0.5793 5.7726 4.4735 19 1 -0.4589 3.6082 4.8171 20 6 3.8878 -0.5430 5.6195 21 6 2.7121 -0.5747 6.5617 22 6 2.4990 0.4655 7.4537 23 6 1.4019 0.3960 8.2984 24 6 0.5691 -0.7051 8.2314 25 7 0.8054 -1.6784 7.3738 26 6 1.8358 -1.6430 6.5513 27 7 2.5283 -0.0219 2.2452 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6768 -1.7489 -1.2490 35 1 1.6769 -0.2076 -2.1391 36 1 3.1301 -0.7217 -1.2489 37 1 1.5700 -2.6788 0.5033 38 1 2.4151 -3.7815 2.5626 39 1 3.9282 1.7924 3.1926 40 1 4.4270 1.9141 4.8970 41 1 3.2705 5.3065 4.2592 42 1 4.2128 -1.5620 5.4097 43 1 4.7061 0.0122 6.0781 44 1 3.1694 1.3116 7.4868 45 1 1.2033 1.1898 9.0032 46 1 -0.2854 -0.7689 8.8889 47 1 1.9975 -2.4592 5.8628 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164007050.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:54 Heat of formation + Delta-G solvation = 73.665134 kcal Electronic energy + Delta-G solvation = -28577.056473 eV Core-core repulsion = 24952.427864 eV Total energy + Delta-G solvation = -3624.628609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89838 -40.98189 -38.52257 -37.22978 -34.83037 -34.07070 -33.36750 -32.47971 -31.46514 -29.33471 -28.21022 -28.12253 -26.96691 -25.38292 -24.92309 -24.36503 -23.35525 -22.28082 -20.30815 -18.67632 -18.28586 -18.03687 -17.77776 -17.07502 -16.65658 -16.45953 -16.39189 -15.72946 -15.50822 -15.33209 -14.90031 -14.80862 -14.54979 -14.43303 -14.36347 -14.14017 -13.90993 -13.43380 -13.26375 -13.15370 -12.95378 -12.78683 -12.62094 -12.55103 -12.53782 -12.22597 -12.09146 -11.99917 -11.93347 -11.78888 -11.33713 -11.28683 -10.77335 -10.67740 -10.55078 -10.37648 -9.93845 -9.66808 -8.65722 -8.10539 -6.23539 0.17557 0.40359 0.47150 0.58346 1.30463 1.33333 1.42068 2.09678 2.39012 2.96352 3.13695 3.16823 3.31730 3.58118 3.69134 3.82312 3.95367 3.98132 4.11090 4.12736 4.18743 4.22680 4.24510 4.46577 4.57645 4.63029 4.70439 4.76806 4.79519 4.80487 4.87913 4.90391 4.92276 5.00932 5.03157 5.05370 5.22956 5.26528 5.27171 5.31420 5.43957 5.44350 5.56401 5.66361 5.74553 5.83736 6.09253 6.19393 6.31497 6.75536 6.88271 7.04189 7.40709 7.68860 8.90204 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.009328 B = 0.005906 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.046375 B = 4739.775814 C = 6503.530848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.021 4.021 3 C -0.118 4.118 4 C -0.127 4.127 5 C 0.204 3.796 6 C -0.295 4.295 7 C 0.177 3.823 8 N -0.590 5.590 9 C 0.552 3.448 10 N -0.574 5.574 11 C 0.286 3.714 12 C -0.494 4.494 13 H 0.029 0.971 14 C 0.021 3.979 15 N -0.922 5.922 16 Si 0.940 3.060 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.287 1.287 20 C 0.180 3.820 21 C -0.149 4.149 22 C -0.054 4.054 23 C -0.180 4.180 24 C 0.085 3.915 25 N -0.514 5.514 26 C 0.105 3.895 27 N -0.577 5.577 28 H 0.025 0.975 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.171 0.829 38 H 0.201 0.799 39 H 0.007 0.993 40 H 0.022 0.978 41 H 0.263 0.737 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.129 0.871 45 H 0.154 0.846 46 H 0.181 0.819 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.826 -12.821 -3.616 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.022 4.022 3 C -0.176 4.176 4 C -0.184 4.184 5 C 0.055 3.945 6 C -0.321 4.321 7 C 0.011 3.989 8 N -0.314 5.314 9 C 0.197 3.803 10 N -0.287 5.287 11 C 0.165 3.835 12 C -0.533 4.533 13 H 0.048 0.952 14 C -0.177 4.177 15 N -0.563 5.563 16 Si 0.767 3.233 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.213 1.213 20 C 0.056 3.944 21 C -0.153 4.153 22 C -0.081 4.081 23 C -0.199 4.199 24 C -0.072 4.072 25 N -0.223 5.223 26 C -0.052 4.052 27 N -0.299 5.299 28 H 0.044 0.956 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.188 0.812 38 H 0.218 0.782 39 H 0.025 0.975 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.147 0.853 45 H 0.172 0.828 46 H 0.198 0.802 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.829 -12.663 -2.720 13.257 hybrid contribution -0.396 1.503 -0.159 1.562 sum -3.225 -11.161 -2.879 11.969 Atomic orbital electron populations 1.21791 0.92092 1.02909 1.01785 1.19663 0.96534 0.94874 0.91177 1.21553 0.99847 0.95374 1.00822 1.21837 1.00648 1.01099 0.94838 1.21864 0.88437 0.91736 0.92478 1.22503 1.11277 0.95311 1.02976 1.23508 0.87350 1.01149 0.86917 1.67896 1.25246 1.04554 1.33697 1.19508 0.88198 0.85669 0.86948 1.46612 1.63907 1.07375 1.10810 1.18709 0.95476 0.73696 0.95638 1.21236 0.95616 0.90865 1.45571 0.95218 1.25448 0.98653 0.97814 0.95820 1.70020 1.31358 1.06085 1.48843 0.85840 0.80517 0.77826 0.79165 1.19052 1.20761 1.21254 1.20244 0.93059 0.99528 0.81580 1.21344 1.00259 0.95880 0.97780 1.21672 0.97104 0.96533 0.92773 1.22385 0.95854 1.00421 1.01288 1.23176 0.98965 0.89350 0.95727 1.67677 1.19228 1.29431 1.05954 1.22734 0.89559 0.97465 0.95403 1.67914 1.17776 1.41787 1.02424 0.95617 0.89707 0.90555 0.94658 0.91020 0.95213 0.90004 0.90072 0.93465 0.81187 0.78235 0.97547 0.96035 0.92748 0.88031 0.89398 0.85270 0.82792 0.80240 0.82679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.41 71.98 0.61 -2.61 16 2 C -0.02 -0.61 0.88 -52.93 -0.05 -0.66 16 3 C -0.12 -4.07 7.84 71.98 0.56 -3.51 16 4 C -0.13 -2.52 8.10 71.98 0.58 -1.94 16 5 C 0.20 7.00 5.56 42.59 0.24 7.23 16 6 C -0.30 -7.88 9.21 22.45 0.21 -7.68 16 7 C 0.18 4.84 11.30 84.71 0.96 5.79 16 8 N -0.59 -20.81 8.64 -198.00 -1.71 -22.52 16 9 C 0.55 23.52 8.13 261.49 2.13 25.64 16 10 N -0.57 -25.21 2.55 -719.52 -1.83 -27.05 16 11 C 0.29 14.81 5.11 85.63 0.44 15.25 16 12 C -0.49 -27.39 9.35 25.60 0.24 -27.15 16 13 H 0.03 1.77 7.82 -2.91 -0.02 1.74 16 14 C 0.02 1.20 5.45 84.65 0.46 1.66 16 15 N -0.92 -53.63 13.30 21.45 0.29 -53.35 16 16 Si 0.94 44.92 29.54 68.60 2.03 46.95 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 20 C 0.18 6.49 5.64 85.63 0.48 6.97 16 21 C -0.15 -5.41 5.48 -19.78 -0.11 -5.52 16 22 C -0.05 -1.93 9.86 22.47 0.22 -1.71 16 23 C -0.18 -5.58 10.11 22.36 0.23 -5.35 16 24 C 0.08 2.58 11.18 84.69 0.95 3.53 16 25 N -0.51 -18.02 10.36 -195.85 -2.03 -20.05 16 26 C 0.11 3.75 10.86 84.67 0.92 4.67 16 27 N -0.58 -25.33 8.03 -186.03 -1.49 -26.82 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.03 1.27 7.88 -2.39 -0.02 1.25 16 34 H 0.08 1.25 6.79 -2.39 -0.02 1.23 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.17 3.09 6.83 -2.91 -0.02 3.07 16 38 H 0.20 3.49 8.06 -2.91 -0.02 3.46 16 39 H 0.01 0.38 7.62 -2.39 -0.02 0.36 16 40 H 0.02 1.15 7.83 -2.38 -0.02 1.13 16 41 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.10 3.32 7.21 -2.38 -0.02 3.31 16 43 H 0.09 2.96 7.81 -2.38 -0.02 2.94 16 44 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 45 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 46 H 0.18 4.09 8.06 -2.91 -0.02 4.07 16 47 H 0.16 5.32 7.61 -2.91 -0.02 5.29 16 Total: -1.00 -70.84 391.13 5.25 -65.59 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.95 Total: 22.62 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 9.06 Total: 14.63 kcal Atomic # 7 Polarization: -143.00 SS G_CDS: -6.78 Total: -149.79 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -70.84 5.25 -65.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164007050.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.250 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds