Wall clock time and date at job start Tue Mar 31 2020 15:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47158 * 2 1 4 4 C 1.52999 * 109.46918 * 240.00026 * 2 1 3 5 5 C 1.50703 * 109.47113 * 119.99846 * 2 1 3 6 6 C 1.38820 * 119.98856 * 74.99583 * 5 2 1 7 7 C 1.38560 * 118.03569 * 179.97438 * 6 5 2 8 8 C 1.39478 * 117.90685 * 0.02562 * 7 6 5 9 9 N 1.39047 * 120.16117 * 180.02562 * 8 7 6 10 10 C 1.46501 * 119.99794 * 348.48231 * 9 8 7 11 11 C 1.50692 * 109.47386 * 266.36682 * 10 9 8 12 12 H 1.07996 * 120.00277 * 245.16357 * 11 10 9 13 13 C 1.37886 * 119.99761 * 65.16008 * 11 10 9 14 14 N 1.31509 * 119.99776 * 11.40683 * 13 11 10 15 15 Si 1.86801 * 119.99948 * 191.39998 * 13 11 10 16 16 H 1.48498 * 109.47087 * 90.00137 * 15 13 11 17 17 H 1.48500 * 109.46980 * 210.00538 * 15 13 11 18 18 H 1.48504 * 109.47102 * 330.00032 * 15 13 11 19 19 C 1.46503 * 120.00362 * 168.48721 * 9 8 7 20 20 C 1.50700 * 109.46608 * 269.99977 * 19 9 8 21 21 C 1.38671 * 120.41649 * 269.71406 * 20 19 9 22 22 C 1.38632 * 118.41926 * 179.78520 * 21 20 19 23 23 C 1.38227 * 119.16015 * 0.52277 * 22 21 20 24 24 N 1.31848 * 120.76318 * 359.71712 * 23 22 21 25 25 C 1.31885 * 121.73011 * 0.02562 * 24 23 22 26 26 N 1.32494 * 119.68287 * 0.27583 * 8 7 6 27 27 N 1.28354 * 122.07115 * 359.39943 * 26 8 7 28 28 H 1.08996 * 109.46918 * 300.00354 * 1 2 3 29 29 H 1.09003 * 109.47061 * 59.99953 * 1 2 3 30 30 H 1.08992 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46752 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46790 * 300.00231 * 3 2 1 33 33 H 1.08998 * 109.46980 * 59.99989 * 3 2 1 34 34 H 1.09005 * 109.47125 * 299.99708 * 4 2 1 35 35 H 1.08998 * 109.47223 * 59.99650 * 4 2 1 36 36 H 1.08999 * 109.47136 * 180.02562 * 4 2 1 37 37 H 1.07994 * 120.98300 * 359.97438 * 6 5 2 38 38 H 1.07995 * 121.04712 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.46746 * 146.36496 * 10 9 8 40 40 H 1.09004 * 109.46937 * 26.37149 * 10 9 8 41 41 H 0.96998 * 119.99963 * 179.97438 * 14 13 11 42 42 H 1.09003 * 109.47175 * 29.99507 * 19 9 8 43 43 H 1.08995 * 109.47401 * 150.00157 * 19 9 8 44 44 H 1.07995 * 120.79539 * 0.02858 * 21 20 19 45 45 H 1.07999 * 120.41789 * 180.21886 * 22 21 20 46 46 H 1.08000 * 119.61711 * 179.75097 * 23 22 21 47 47 H 1.08001 * 119.62276 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.9702 -2.0951 1.3063 7 6 2.4438 -2.7064 2.4560 8 6 2.9534 -1.8909 3.4663 9 7 3.4415 -2.4550 4.6398 10 6 3.1963 -3.8699 4.9296 11 6 1.9543 -4.0021 5.7727 12 1 2.0248 -4.3773 6.7830 13 6 0.7278 -3.6440 5.2543 14 7 0.6029 -3.4028 3.9675 15 14 -0.7564 -3.5017 6.3796 16 1 -0.8505 -2.1148 6.9018 17 1 -1.9884 -3.8285 5.6177 18 1 -0.6101 -4.4489 7.5140 19 6 4.2009 -1.6343 5.5864 20 6 5.6669 -1.6986 5.2433 21 6 6.4779 -2.6718 5.8073 22 6 7.8196 -2.6956 5.4591 23 6 8.3032 -1.7484 4.5762 24 7 7.5035 -0.8342 4.0631 25 6 6.2213 -0.7845 4.3677 26 7 2.9655 -0.5760 3.3047 27 7 2.5305 -0.0169 2.2343 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 1.5647 -2.6787 0.4931 38 1 2.4192 -3.7804 2.5664 39 1 4.0480 -4.2830 5.4701 40 1 3.0606 -4.4140 3.9949 41 1 -0.2599 -3.1513 3.6027 42 1 3.8589 -0.6010 5.5273 43 1 4.0477 -2.0105 6.5979 44 1 6.0732 -3.3965 6.4982 45 1 8.4796 -3.4417 5.8763 46 1 9.3480 -1.7576 4.3030 47 1 5.5973 -0.0207 3.9277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164009894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:52 Heat of formation + Delta-G solvation = 93.924377 kcal Electronic energy + Delta-G solvation = -28440.589553 eV Core-core repulsion = 24816.839450 eV Total energy + Delta-G solvation = -3623.750102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.13385 -39.72215 -37.09651 -35.68479 -33.25075 -32.16453 -31.72741 -31.11541 -29.62554 -27.57076 -27.10587 -26.94319 -25.40218 -23.91780 -23.19272 -22.72434 -22.00331 -20.68823 -19.09833 -16.94291 -16.79760 -16.44089 -16.07248 -15.80117 -15.10310 -15.08096 -14.71341 -14.39521 -13.98960 -13.60288 -13.51357 -13.33733 -13.22174 -12.94076 -12.78432 -12.61438 -12.40433 -11.98721 -11.92880 -11.81979 -11.45981 -11.35942 -11.24406 -11.04089 -10.98958 -10.84715 -10.67413 -10.55440 -10.15380 -9.91433 -9.73916 -9.54101 -9.32973 -9.13956 -8.92586 -8.77091 -8.66195 -8.35045 -6.51820 -6.30562 -4.43995 1.37007 1.55165 2.16235 2.37716 3.13586 3.22719 3.24049 3.89445 4.19145 4.27155 4.71219 4.80771 4.91831 5.04334 5.08009 5.15858 5.24264 5.29240 5.37490 5.40824 5.54929 5.68180 5.68935 5.81819 5.88499 5.92700 6.00154 6.03905 6.07255 6.13920 6.16175 6.21350 6.26252 6.33288 6.34054 6.41069 6.44677 6.55667 6.63460 6.64640 6.73642 6.90228 6.99967 7.05527 7.27230 7.31195 7.55215 7.91235 8.23098 8.24668 8.48568 8.64707 9.25702 10.06815 10.64925 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.006127 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.223281 B = 4568.869621 C = 7378.259436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.001 4.001 3 C -0.125 4.125 4 C -0.137 4.137 5 C 0.015 3.985 6 C -0.128 4.128 7 C -0.060 4.060 8 C 0.367 3.633 9 N -0.574 5.574 10 C 0.238 3.762 11 C -0.540 4.540 12 H 0.061 0.939 13 C 0.081 3.919 14 N -0.864 5.864 15 Si 0.895 3.105 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.169 3.831 20 C -0.138 4.138 21 C -0.066 4.066 22 C -0.180 4.180 23 C 0.084 3.916 24 N -0.491 5.491 25 C 0.115 3.885 26 N -0.343 5.343 27 N -0.233 5.233 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.122 0.878 38 H 0.145 0.855 39 H 0.029 0.971 40 H 0.045 0.955 41 H 0.267 0.733 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.148 0.852 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 1.616 -4.393 7.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.003 4.003 3 C -0.183 4.183 4 C -0.195 4.195 5 C -0.138 4.138 6 C -0.157 4.157 7 C -0.094 4.094 8 C 0.125 3.875 9 N -0.287 5.287 10 C 0.120 3.880 11 C -0.579 4.579 12 H 0.079 0.921 13 C -0.124 4.124 14 N -0.500 5.500 15 Si 0.722 3.278 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.197 1.197 19 C 0.043 3.957 20 C -0.142 4.142 21 C -0.093 4.093 22 C -0.200 4.200 23 C -0.073 4.073 24 N -0.199 5.199 25 C -0.042 4.042 26 N -0.193 5.193 27 N -0.071 5.071 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.163 0.837 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.165 0.835 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.892 3.613 -4.249 8.866 hybrid contribution -1.840 -2.129 0.700 2.900 sum 5.052 1.484 -3.549 6.350 Atomic orbital electron populations 1.21831 0.94181 1.01830 1.01335 1.19135 0.94986 0.95208 0.90994 1.21655 1.01041 0.94562 1.01027 1.21890 1.01075 1.00223 0.96306 1.21881 1.02900 0.91956 0.97106 1.21560 1.00993 0.94509 0.98590 1.21685 0.95335 1.01935 0.90475 1.19959 0.89694 0.90536 0.87283 1.47552 1.53505 1.11149 1.16450 1.19331 0.94558 0.77062 0.97074 1.21526 0.91828 1.44050 1.00487 0.92081 1.25002 0.99101 0.93511 0.94812 1.69673 1.24823 1.44597 1.10877 0.86547 0.81699 0.78703 0.80817 1.20447 1.21112 1.19737 1.20016 0.84464 0.97666 0.93517 1.21683 0.98602 0.96008 0.97907 1.21560 0.93196 0.96734 0.97772 1.22066 0.96432 1.00857 1.00607 1.22658 0.99461 0.91202 0.93988 1.67698 1.05399 1.23228 1.23606 1.22861 0.90693 0.97329 0.93335 1.72688 1.22615 1.08273 1.15757 1.72385 1.07003 1.31547 0.96208 0.92662 0.92774 0.92631 0.92775 0.93658 0.91829 0.92491 0.92645 0.92729 0.85987 0.83731 0.95304 0.93718 0.92227 0.89517 0.90233 0.84991 0.85346 0.83477 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.41 37.16 0.31 -1.58 16 2 C 0.00 -0.02 0.88 -155.65 -0.14 -0.15 16 3 C -0.13 -1.82 7.82 37.16 0.29 -1.53 16 4 C -0.14 -1.77 8.09 37.16 0.30 -1.47 16 5 C 0.01 0.28 5.63 -82.40 -0.46 -0.19 16 6 C -0.13 -2.48 9.20 -39.25 -0.36 -2.84 16 7 C -0.06 -1.30 6.54 -39.00 -0.26 -1.55 16 8 C 0.37 8.19 6.63 -154.77 -1.03 7.16 16 9 N -0.57 -12.17 2.50 -176.43 -0.44 -12.62 16 10 C 0.24 5.20 5.54 -5.20 -0.03 5.17 16 11 C -0.54 -13.07 9.40 -34.44 -0.32 -13.39 16 12 H 0.06 1.47 7.84 -52.49 -0.41 1.06 16 13 C 0.08 2.01 5.34 -17.82 -0.10 1.92 16 14 N -0.86 -21.60 8.67 55.43 0.48 -21.12 16 15 Si 0.89 20.09 29.55 -169.99 -5.02 15.07 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 C 0.17 3.14 5.70 -5.19 -0.03 3.11 16 20 C -0.14 -2.33 5.48 -104.48 -0.57 -2.90 16 21 C -0.07 -0.97 9.86 -39.28 -0.39 -1.35 16 22 C -0.18 -2.33 10.11 -39.44 -0.40 -2.72 16 23 C 0.08 1.17 11.18 -17.55 -0.20 0.98 16 24 N -0.49 -8.32 10.36 -13.25 -0.14 -8.46 16 25 C 0.11 2.02 10.86 -17.55 -0.19 1.83 16 26 N -0.34 -7.73 10.27 31.23 0.32 -7.41 16 27 N -0.23 -4.99 10.20 33.61 0.34 -4.64 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 1.00 7.87 -51.93 -0.41 0.59 16 34 H 0.06 0.71 6.76 -51.93 -0.35 0.36 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.12 2.06 6.81 -52.49 -0.36 1.70 16 38 H 0.15 3.22 5.45 -52.49 -0.29 2.94 16 39 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.04 1.02 5.68 -51.93 -0.30 0.73 16 41 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.09 1.69 7.21 -51.93 -0.37 1.31 16 43 H 0.08 1.41 8.02 -51.93 -0.42 1.00 16 44 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.16 2.92 8.06 -52.49 -0.42 2.50 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -27.28 380.80 -9.39 -36.66 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.11 Total: 6.28 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -3.56 Total: -9.51 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.57 Total: -54.24 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.28 -9.39 -36.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164009894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.589 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds