Wall clock time and date at job start Tue Mar 31 2020 15:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47158 * 2 1 4 4 C 1.52999 * 109.46918 * 240.00026 * 2 1 3 5 5 C 1.50703 * 109.47113 * 119.99846 * 2 1 3 6 6 C 1.38820 * 119.98856 * 74.99583 * 5 2 1 7 7 C 1.38560 * 118.03569 * 179.97438 * 6 5 2 8 8 C 1.39478 * 117.90685 * 0.02562 * 7 6 5 9 9 N 1.39047 * 120.16117 * 180.02562 * 8 7 6 10 10 C 1.46501 * 119.99794 * 348.48231 * 9 8 7 11 11 C 1.50692 * 109.47386 * 266.36682 * 10 9 8 12 12 H 1.07996 * 120.00277 * 245.16357 * 11 10 9 13 13 C 1.37886 * 119.99761 * 65.16008 * 11 10 9 14 14 N 1.31509 * 119.99776 * 11.40683 * 13 11 10 15 15 Si 1.86801 * 119.99948 * 191.39998 * 13 11 10 16 16 H 1.48498 * 109.47087 * 90.00137 * 15 13 11 17 17 H 1.48500 * 109.46980 * 210.00538 * 15 13 11 18 18 H 1.48504 * 109.47102 * 330.00032 * 15 13 11 19 19 C 1.46503 * 120.00362 * 168.48721 * 9 8 7 20 20 C 1.50700 * 109.46608 * 269.99977 * 19 9 8 21 21 C 1.38671 * 120.41649 * 269.71406 * 20 19 9 22 22 C 1.38632 * 118.41926 * 179.78520 * 21 20 19 23 23 C 1.38227 * 119.16015 * 0.52277 * 22 21 20 24 24 N 1.31848 * 120.76318 * 359.71712 * 23 22 21 25 25 C 1.31885 * 121.73011 * 0.02562 * 24 23 22 26 26 N 1.32494 * 119.68287 * 0.27583 * 8 7 6 27 27 N 1.28354 * 122.07115 * 359.39943 * 26 8 7 28 28 H 1.08996 * 109.46918 * 300.00354 * 1 2 3 29 29 H 1.09003 * 109.47061 * 59.99953 * 1 2 3 30 30 H 1.08992 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46752 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.46790 * 300.00231 * 3 2 1 33 33 H 1.08998 * 109.46980 * 59.99989 * 3 2 1 34 34 H 1.09005 * 109.47125 * 299.99708 * 4 2 1 35 35 H 1.08998 * 109.47223 * 59.99650 * 4 2 1 36 36 H 1.08999 * 109.47136 * 180.02562 * 4 2 1 37 37 H 1.07994 * 120.98300 * 359.97438 * 6 5 2 38 38 H 1.07995 * 121.04712 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.46746 * 146.36496 * 10 9 8 40 40 H 1.09004 * 109.46937 * 26.37149 * 10 9 8 41 41 H 0.96998 * 119.99963 * 179.97438 * 14 13 11 42 42 H 1.09003 * 109.47175 * 29.99507 * 19 9 8 43 43 H 1.08995 * 109.47401 * 150.00157 * 19 9 8 44 44 H 1.07995 * 120.79539 * 0.02858 * 21 20 19 45 45 H 1.07999 * 120.41789 * 180.21886 * 22 21 20 46 46 H 1.08000 * 119.61711 * 179.75097 * 23 22 21 47 47 H 1.08001 * 119.62276 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.9702 -2.0951 1.3063 7 6 2.4438 -2.7064 2.4560 8 6 2.9534 -1.8909 3.4663 9 7 3.4415 -2.4550 4.6398 10 6 3.1963 -3.8699 4.9296 11 6 1.9543 -4.0021 5.7727 12 1 2.0248 -4.3773 6.7830 13 6 0.7278 -3.6440 5.2543 14 7 0.6029 -3.4028 3.9675 15 14 -0.7564 -3.5017 6.3796 16 1 -0.8505 -2.1148 6.9018 17 1 -1.9884 -3.8285 5.6177 18 1 -0.6101 -4.4489 7.5140 19 6 4.2009 -1.6343 5.5864 20 6 5.6669 -1.6986 5.2433 21 6 6.4779 -2.6718 5.8073 22 6 7.8196 -2.6956 5.4591 23 6 8.3032 -1.7484 4.5762 24 7 7.5035 -0.8342 4.0631 25 6 6.2213 -0.7845 4.3677 26 7 2.9655 -0.5760 3.3047 27 7 2.5305 -0.0169 2.2343 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 1.5647 -2.6787 0.4931 38 1 2.4192 -3.7804 2.5664 39 1 4.0480 -4.2830 5.4701 40 1 3.0606 -4.4140 3.9949 41 1 -0.2599 -3.1513 3.6027 42 1 3.8589 -0.6010 5.5273 43 1 4.0477 -2.0105 6.5979 44 1 6.0732 -3.3965 6.4982 45 1 8.4796 -3.4417 5.8763 46 1 9.3480 -1.7576 4.3030 47 1 5.5973 -0.0207 3.9277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164009894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:51 Heat of formation + Delta-G solvation = 81.847350 kcal Electronic energy + Delta-G solvation = -28441.113252 eV Core-core repulsion = 24816.839450 eV Total energy + Delta-G solvation = -3624.273801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.65763 -40.99408 -38.53611 -37.12678 -34.91178 -33.67710 -33.15730 -32.42953 -31.25398 -29.17190 -28.27142 -28.05809 -26.91421 -25.54989 -24.44178 -24.26243 -23.45779 -22.14741 -20.45246 -18.60706 -18.24729 -17.81720 -17.71311 -17.09493 -16.75843 -16.42687 -16.23186 -15.79599 -15.35385 -15.07344 -14.79218 -14.74376 -14.57369 -14.39943 -14.23993 -13.91623 -13.86251 -13.44752 -13.09620 -13.00935 -12.97970 -12.84417 -12.73764 -12.54029 -12.49816 -12.38651 -11.93391 -11.79389 -11.73636 -11.59848 -11.27133 -10.97959 -10.75062 -10.68018 -10.43295 -10.35341 -10.05405 -9.87935 -8.22251 -8.12360 -6.34402 0.17867 0.37286 0.52327 0.79087 1.32350 1.39257 1.43527 2.33713 2.38239 2.94952 3.19650 3.22270 3.55926 3.61640 3.92822 3.94659 3.98154 4.08240 4.12658 4.17261 4.20261 4.29686 4.38560 4.47874 4.55009 4.71326 4.76420 4.84827 4.85342 4.86764 4.88152 4.95160 4.96658 5.07505 5.07990 5.09397 5.21470 5.25467 5.27570 5.36373 5.42937 5.50989 5.54588 5.63208 5.69413 5.77109 5.83638 6.06870 6.51758 6.79919 6.87022 7.05268 7.35653 8.43499 8.74018 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.006127 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.223281 B = 4568.869621 C = 7378.259436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.005 4.005 3 C -0.120 4.120 4 C -0.132 4.132 5 C 0.017 3.983 6 C -0.124 4.124 7 C -0.075 4.075 8 C 0.354 3.646 9 N -0.579 5.579 10 C 0.245 3.755 11 C -0.552 4.552 12 H 0.059 0.941 13 C 0.044 3.956 14 N -0.874 5.874 15 Si 0.940 3.060 16 H -0.293 1.293 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.174 3.826 20 C -0.148 4.148 21 C -0.069 4.069 22 C -0.164 4.164 23 C 0.082 3.918 24 N -0.515 5.515 25 C 0.098 3.902 26 N -0.363 5.363 27 N -0.257 5.257 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.148 0.852 38 H 0.134 0.866 39 H 0.048 0.952 40 H 0.031 0.969 41 H 0.260 0.740 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.149 0.851 45 H 0.171 0.829 46 H 0.184 0.816 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.180 0.813 -5.237 8.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.007 4.007 3 C -0.178 4.178 4 C -0.190 4.190 5 C -0.137 4.137 6 C -0.152 4.152 7 C -0.109 4.109 8 C 0.111 3.889 9 N -0.291 5.291 10 C 0.126 3.874 11 C -0.590 4.590 12 H 0.078 0.922 13 C -0.160 4.160 14 N -0.509 5.509 15 Si 0.767 3.233 16 H -0.220 1.220 17 H -0.212 1.212 18 H -0.188 1.188 19 C 0.050 3.950 20 C -0.152 4.152 21 C -0.095 4.095 22 C -0.183 4.183 23 C -0.075 4.075 24 N -0.224 5.224 25 C -0.058 4.058 26 N -0.213 5.213 27 N -0.095 5.095 28 H 0.053 0.947 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.166 0.834 38 H 0.152 0.848 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.167 0.833 45 H 0.188 0.812 46 H 0.200 0.800 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.834 2.821 -5.082 9.755 hybrid contribution -2.042 -1.871 0.925 2.920 sum 5.792 0.951 -4.157 7.193 Atomic orbital electron populations 1.21803 0.93100 1.01904 1.01917 1.19341 0.95748 0.95420 0.90145 1.21608 1.00273 0.94303 1.01589 1.21862 1.00640 1.00552 0.95932 1.22565 1.01159 0.92232 0.97729 1.21887 0.99833 0.94956 0.98529 1.21686 0.96380 1.01402 0.91412 1.20100 0.90209 0.90645 0.87937 1.47389 1.53986 1.11074 1.16689 1.19184 0.94541 0.77433 0.96246 1.21766 0.92757 1.43933 1.00590 0.92246 1.25523 1.00872 0.93882 0.95713 1.69826 1.24458 1.45202 1.11457 0.85841 0.79793 0.77748 0.79869 1.21993 1.21198 1.18790 1.19966 0.85634 0.96248 0.93197 1.21426 0.97583 0.97238 0.98930 1.21815 0.93935 0.96138 0.97630 1.22481 0.95988 1.00755 0.99119 1.23328 1.00636 0.90254 0.93293 1.67672 1.05210 1.24863 1.24698 1.22548 0.91216 0.97680 0.94404 1.72642 1.23456 1.08564 1.16665 1.72341 1.08087 1.32241 0.96782 0.94732 0.89531 0.92812 0.93919 0.90473 0.93829 0.92007 0.89742 0.93438 0.83401 0.84819 0.93326 0.95094 0.93036 0.91379 0.89644 0.83342 0.81177 0.79956 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 8.41 71.98 0.61 -2.83 16 2 C 0.00 -0.13 0.88 -52.92 -0.05 -0.18 16 3 C -0.12 -3.36 7.82 71.98 0.56 -2.80 16 4 C -0.13 -3.06 8.09 71.98 0.58 -2.48 16 5 C 0.02 0.65 5.63 42.71 0.24 0.89 16 6 C -0.12 -4.80 9.20 22.49 0.21 -4.59 16 7 C -0.07 -3.30 6.54 22.65 0.15 -3.15 16 8 C 0.35 16.33 6.63 133.10 0.88 17.21 16 9 N -0.58 -25.20 2.50 -712.09 -1.78 -26.98 16 10 C 0.25 10.80 5.54 85.63 0.47 11.28 16 11 C -0.55 -26.83 9.40 25.60 0.24 -26.59 16 12 H 0.06 2.85 7.84 -2.91 -0.02 2.83 16 13 C 0.04 2.19 5.34 84.66 0.45 2.64 16 14 N -0.87 -44.43 8.67 21.45 0.19 -44.24 16 15 Si 0.94 41.63 29.55 68.60 2.03 43.65 16 16 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 17 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 19 C 0.17 6.69 5.70 85.63 0.49 7.18 16 20 C -0.15 -5.03 5.48 -19.77 -0.11 -5.13 16 21 C -0.07 -1.88 9.86 22.47 0.22 -1.66 16 22 C -0.16 -3.70 10.11 22.36 0.23 -3.47 16 23 C 0.08 2.08 11.18 84.69 0.95 3.03 16 24 N -0.52 -17.30 10.36 -195.84 -2.03 -19.33 16 25 C 0.10 3.56 10.86 84.67 0.92 4.48 16 26 N -0.36 -17.15 10.27 -55.10 -0.57 -17.71 16 27 N -0.26 -11.39 10.20 -47.57 -0.49 -11.88 16 28 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.43 8.10 -2.39 -0.02 1.42 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.37 7.87 -2.39 -0.02 1.35 16 34 H 0.06 1.37 6.76 -2.38 -0.02 1.35 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.15 4.83 6.81 -2.91 -0.02 4.81 16 38 H 0.13 6.15 5.45 -2.91 -0.02 6.14 16 39 H 0.05 1.90 8.10 -2.38 -0.02 1.88 16 40 H 0.03 1.45 5.68 -2.38 -0.01 1.43 16 41 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 42 H 0.07 2.83 7.21 -2.39 -0.02 2.81 16 43 H 0.09 3.09 8.02 -2.39 -0.02 3.07 16 44 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 45 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 46 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 47 H 0.13 5.36 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -61.02 380.80 5.35 -55.67 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.96 Total: 27.00 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 7.04 Total: -6.18 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -4.68 Total: -120.14 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -61.02 5.35 -55.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164009894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.515 kcal (2) G-P(sol) polarization free energy of solvation -61.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds