Wall clock time and date at job start Tue Mar 31 2020 14:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38114 * 120.40016 * 2 1 4 4 C 1.39620 * 118.33558 * 179.97438 * 3 2 1 5 5 N 1.38541 * 120.53635 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00244 * 184.99862 * 5 4 3 7 7 C 1.50701 * 109.47173 * 269.99809 * 6 5 4 8 8 H 1.07999 * 119.99726 * 359.97438 * 7 6 5 9 9 C 1.37866 * 120.00214 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00714 * 180.02562 * 9 7 6 11 11 Si 1.86810 * 119.99939 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46722 * 89.99987 * 11 9 7 13 13 H 1.48503 * 109.47095 * 209.99957 * 11 9 7 14 14 H 1.48503 * 109.47042 * 330.00162 * 11 9 7 15 15 C 1.46500 * 119.99891 * 4.99630 * 5 4 3 16 16 C 1.50700 * 109.47380 * 270.00609 * 15 5 4 17 17 C 1.38677 * 120.41537 * 270.26287 * 16 15 5 18 18 C 1.38625 * 118.42126 * 180.22222 * 17 16 15 19 19 C 1.38223 * 119.15978 * 359.46985 * 18 17 16 20 20 N 1.31856 * 120.76567 * 0.30777 * 19 18 17 21 21 C 1.31884 * 121.72562 * 359.97275 * 20 19 18 22 22 N 1.32996 * 118.93729 * 0.25049 * 4 3 2 23 23 C 1.31750 * 120.68308 * 359.48902 * 22 4 3 24 24 C 1.50701 * 119.08769 * 180.26605 * 23 22 4 25 25 C 1.52999 * 109.47338 * 120.25355 * 24 23 22 26 26 C 1.52997 * 109.47449 * 240.25670 * 24 23 22 27 27 N 1.31798 * 121.83101 * 0.52761 * 23 22 4 28 28 H 1.08990 * 109.47310 * 89.99936 * 1 2 3 29 29 H 1.09000 * 109.47038 * 209.99920 * 1 2 3 30 30 H 1.08999 * 109.47163 * 329.99624 * 1 2 3 31 31 H 1.08001 * 120.83128 * 359.95612 * 3 2 1 32 32 H 1.09001 * 109.47175 * 29.99936 * 6 5 4 33 33 H 1.08999 * 109.47090 * 149.99779 * 6 5 4 34 34 H 0.96992 * 120.00539 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47314 * 149.99854 * 15 5 4 36 36 H 1.09007 * 109.46809 * 29.99993 * 15 5 4 37 37 H 1.08003 * 120.78603 * 359.97006 * 17 16 15 38 38 H 1.08002 * 120.42343 * 179.75479 * 18 17 16 39 39 H 1.08005 * 119.61951 * 180.28273 * 19 18 17 40 40 H 1.07998 * 119.61861 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.46727 * 0.25295 * 24 23 22 42 42 H 1.09004 * 109.46808 * 180.02562 * 25 24 23 43 43 H 1.09002 * 109.47306 * 299.99927 * 25 24 23 44 44 H 1.08994 * 109.46903 * 60.00184 * 25 24 23 45 45 H 1.09007 * 109.46771 * 59.99266 * 26 24 23 46 46 H 1.08992 * 109.47486 * 179.97438 * 26 24 23 47 47 H 1.09001 * 109.47263 * 300.00204 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6012 1.1409 0.0005 5 7 4.3477 2.3081 0.0000 6 6 5.8072 2.2442 -0.1099 7 6 6.4114 2.1566 1.2679 8 1 5.7722 2.1496 2.1383 9 6 7.7801 2.0853 1.4171 10 7 8.3075 2.0083 2.6195 11 14 8.8857 2.0965 -0.0886 12 1 9.2449 3.4968 -0.4284 13 1 10.1212 1.3243 0.1986 14 1 8.1698 1.4776 -1.2330 15 6 3.6775 3.6062 0.1094 16 6 3.3438 4.1170 -1.2685 17 6 4.2504 4.9021 -1.9649 18 6 3.8989 5.3535 -3.2276 19 6 2.6698 4.9994 -3.7514 20 7 1.8343 4.2472 -3.0623 21 6 2.1329 3.8046 -1.8564 22 7 4.2024 -0.0454 -0.0040 23 6 3.4956 -1.1572 0.0011 24 6 4.2140 -2.4820 0.0017 25 6 3.8226 -3.2739 1.2510 26 6 3.8237 -3.2745 -1.2474 27 7 2.1777 -1.1432 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6862 2.1380 -0.0007 32 1 6.0899 1.3639 -0.6873 33 1 6.1734 3.1403 -0.6109 34 1 9.2704 1.9585 2.7244 35 1 4.3374 4.3148 0.6097 36 1 2.7600 3.4939 0.6872 37 1 5.2060 5.1590 -1.5320 38 1 4.5788 5.9702 -3.7968 39 1 2.3902 5.3432 -4.7364 40 1 1.4232 3.1902 -1.3224 41 1 5.2906 -2.3115 0.0021 42 1 4.3426 -4.2319 1.2516 43 1 4.1008 -2.7093 2.1410 44 1 2.7461 -3.4444 1.2506 45 1 4.1025 -2.7103 -2.1375 46 1 4.3436 -4.2324 -1.2472 47 1 2.7471 -3.4450 -1.2479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:11 Heat of formation + Delta-G solvation = 83.513355 kcal Electronic energy + Delta-G solvation = -28036.697770 eV Core-core repulsion = 24412.496212 eV Total energy + Delta-G solvation = -3624.201558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70343 -40.04402 -37.09754 -35.23764 -33.58910 -32.89352 -32.30137 -31.42886 -30.56959 -28.72332 -27.46691 -26.90887 -25.92438 -23.97331 -23.51982 -22.63442 -22.10631 -20.62540 -19.58388 -17.28198 -17.14337 -16.95726 -16.59802 -15.98901 -15.49677 -14.91241 -14.84328 -14.54514 -14.52074 -13.96694 -13.83635 -13.54036 -13.49843 -13.15179 -13.01537 -12.91167 -12.58558 -12.41774 -12.28987 -11.98062 -11.92612 -11.74571 -11.65474 -11.41233 -11.03380 -10.91726 -10.66974 -10.60408 -10.49522 -10.01247 -9.92780 -9.79015 -9.52667 -9.44591 -9.07358 -8.98529 -8.64781 -8.50301 -7.24024 -6.13750 -4.12326 1.06401 1.29165 1.56111 1.96767 3.19756 3.28356 3.32937 3.43399 3.92797 4.33275 4.33645 4.36720 4.42305 4.66232 4.80152 4.83924 4.99978 5.03466 5.12522 5.20139 5.25908 5.31815 5.43420 5.49735 5.52698 5.59548 5.64592 5.67259 5.70886 5.83000 5.86149 5.94607 6.02419 6.06088 6.08860 6.11541 6.19577 6.22664 6.29824 6.48229 6.49514 6.56666 6.68642 6.75883 7.03419 7.36891 7.53363 7.87225 7.94771 8.03328 8.45046 8.89413 8.95016 9.45987 10.99589 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007069 B = 0.006460 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3959.726005 B = 4333.502052 C = 7241.394711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.196 3.804 3 C -0.318 4.318 4 C 0.455 3.545 5 N -0.567 5.567 6 C 0.226 3.774 7 C -0.523 4.523 8 H 0.074 0.926 9 C 0.075 3.925 10 N -0.896 5.896 11 Si 0.870 3.130 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.166 3.834 16 C -0.151 4.151 17 C -0.058 4.058 18 C -0.175 4.175 19 C 0.092 3.908 20 N -0.488 5.488 21 C 0.108 3.892 22 N -0.553 5.553 23 C 0.366 3.634 24 C -0.027 4.027 25 C -0.136 4.136 26 C -0.135 4.135 27 N -0.570 5.570 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.044 0.956 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.493 0.462 -8.926 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.053 3.947 3 C -0.347 4.347 4 C 0.211 3.789 5 N -0.274 5.274 6 C 0.106 3.894 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.127 4.127 10 N -0.534 5.534 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.189 1.189 15 C 0.042 3.958 16 C -0.155 4.155 17 C -0.084 4.084 18 C -0.195 4.195 19 C -0.065 4.065 20 N -0.196 5.196 21 C -0.049 4.049 22 N -0.276 5.276 23 C 0.096 3.904 24 C -0.047 4.047 25 C -0.194 4.194 26 C -0.193 4.193 27 N -0.291 5.291 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.150 0.850 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.171 0.829 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.509 -0.394 -9.188 15.526 hybrid contribution 1.360 1.271 -0.289 1.884 sum -11.149 0.877 -9.477 14.659 Atomic orbital electron populations 1.20666 0.88899 1.03232 1.02908 1.21160 0.96544 0.87901 0.89141 1.21913 0.93920 1.00123 1.18736 1.18475 0.87451 0.86971 0.86003 1.46677 1.07414 1.00559 1.72759 1.19701 0.74228 0.97133 0.98356 1.21271 0.92177 1.51005 0.91714 0.90807 1.24805 0.97785 0.94538 0.95587 1.69885 1.11842 1.50241 1.21468 0.86948 0.80914 0.78411 0.84059 1.20235 1.20871 1.18893 1.20281 0.98895 0.85370 0.91290 1.21518 0.95642 0.98797 0.99498 1.21633 0.98919 0.93978 0.93889 1.22140 0.98468 1.02136 0.96725 1.22729 0.90425 0.94107 0.99254 1.67687 1.34361 1.10101 1.07439 1.22814 0.94962 0.95977 0.91170 1.67935 1.40718 0.97072 1.21900 1.22694 0.86257 0.93259 0.88172 1.19893 0.99782 0.88371 0.96648 1.21730 1.02057 0.99139 0.96465 1.21738 1.02216 0.99123 0.96251 1.67921 1.09377 1.29553 1.22221 0.90398 0.90465 0.90843 0.85028 0.93813 0.96182 0.92561 0.88169 0.89892 0.84455 0.84881 0.83055 0.82870 0.88731 0.92216 0.92661 0.91757 0.93138 0.92185 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.21 36.01 0.37 -0.74 16 2 C 0.20 3.09 6.81 -82.33 -0.56 2.53 16 3 C -0.32 -5.27 8.27 -39.11 -0.32 -5.59 16 4 C 0.45 9.14 7.38 -154.78 -1.14 8.00 16 5 N -0.57 -11.29 2.54 -176.40 -0.45 -11.73 16 6 C 0.23 5.25 4.23 -5.19 -0.02 5.23 16 7 C -0.52 -14.32 9.94 -34.44 -0.34 -14.66 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 11 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 15 C 0.17 2.60 5.35 -5.19 -0.03 2.57 16 16 C -0.15 -2.15 5.48 -104.48 -0.57 -2.73 16 17 C -0.06 -0.77 9.86 -39.28 -0.39 -1.16 16 18 C -0.17 -2.03 10.11 -39.44 -0.40 -2.43 16 19 C 0.09 1.10 11.18 -17.55 -0.20 0.91 16 20 N -0.49 -6.88 10.36 -13.25 -0.14 -7.01 16 21 C 0.11 1.50 10.39 -17.55 -0.18 1.32 16 22 N -0.55 -12.02 9.18 -9.96 -0.09 -12.12 16 23 C 0.37 6.95 6.34 -157.23 -1.00 5.95 16 24 C -0.03 -0.43 3.25 -91.77 -0.30 -0.72 16 25 C -0.14 -1.92 9.09 37.16 0.34 -1.58 16 26 C -0.14 -1.81 9.09 37.16 0.34 -1.47 16 27 N -0.57 -9.94 9.74 -7.07 -0.07 -10.01 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.13 1.80 4.09 -52.49 -0.21 1.58 16 32 H 0.04 1.10 6.53 -51.93 -0.34 0.77 16 33 H 0.02 0.44 7.50 -51.93 -0.39 0.06 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.10 1.57 8.03 -51.93 -0.42 1.15 16 36 H 0.08 1.13 6.40 -51.93 -0.33 0.80 16 37 H 0.14 1.76 8.06 -52.48 -0.42 1.33 16 38 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.15 1.92 5.52 -52.49 -0.29 1.63 16 41 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.88 8.01 -51.93 -0.42 0.47 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.86 8.01 -51.93 -0.42 0.44 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -33.06 386.14 -10.38 -43.44 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.05 Total: 4.09 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -4.51 Total: -2.55 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: 0.03 Total: -66.97 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.06 -10.38 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.952 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds