Wall clock time and date at job start Tue Mar 31 2020 14:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38114 * 120.40016 * 2 1 4 4 C 1.39620 * 118.33558 * 179.97438 * 3 2 1 5 5 N 1.38541 * 120.53635 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00244 * 184.99862 * 5 4 3 7 7 C 1.50701 * 109.47173 * 269.99809 * 6 5 4 8 8 H 1.07999 * 119.99726 * 359.97438 * 7 6 5 9 9 C 1.37866 * 120.00214 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00714 * 180.02562 * 9 7 6 11 11 Si 1.86810 * 119.99939 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46722 * 89.99987 * 11 9 7 13 13 H 1.48503 * 109.47095 * 209.99957 * 11 9 7 14 14 H 1.48503 * 109.47042 * 330.00162 * 11 9 7 15 15 C 1.46500 * 119.99891 * 4.99630 * 5 4 3 16 16 C 1.50700 * 109.47380 * 270.00609 * 15 5 4 17 17 C 1.38677 * 120.41537 * 270.26287 * 16 15 5 18 18 C 1.38625 * 118.42126 * 180.22222 * 17 16 15 19 19 C 1.38223 * 119.15978 * 359.46985 * 18 17 16 20 20 N 1.31856 * 120.76567 * 0.30777 * 19 18 17 21 21 C 1.31884 * 121.72562 * 359.97275 * 20 19 18 22 22 N 1.32996 * 118.93729 * 0.25049 * 4 3 2 23 23 C 1.31750 * 120.68308 * 359.48902 * 22 4 3 24 24 C 1.50701 * 119.08769 * 180.26605 * 23 22 4 25 25 C 1.52999 * 109.47338 * 120.25355 * 24 23 22 26 26 C 1.52997 * 109.47449 * 240.25670 * 24 23 22 27 27 N 1.31798 * 121.83101 * 0.52761 * 23 22 4 28 28 H 1.08990 * 109.47310 * 89.99936 * 1 2 3 29 29 H 1.09000 * 109.47038 * 209.99920 * 1 2 3 30 30 H 1.08999 * 109.47163 * 329.99624 * 1 2 3 31 31 H 1.08001 * 120.83128 * 359.95612 * 3 2 1 32 32 H 1.09001 * 109.47175 * 29.99936 * 6 5 4 33 33 H 1.08999 * 109.47090 * 149.99779 * 6 5 4 34 34 H 0.96992 * 120.00539 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47314 * 149.99854 * 15 5 4 36 36 H 1.09007 * 109.46809 * 29.99993 * 15 5 4 37 37 H 1.08003 * 120.78603 * 359.97006 * 17 16 15 38 38 H 1.08002 * 120.42343 * 179.75479 * 18 17 16 39 39 H 1.08005 * 119.61951 * 180.28273 * 19 18 17 40 40 H 1.07998 * 119.61861 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.46727 * 0.25295 * 24 23 22 42 42 H 1.09004 * 109.46808 * 180.02562 * 25 24 23 43 43 H 1.09002 * 109.47306 * 299.99927 * 25 24 23 44 44 H 1.08994 * 109.46903 * 60.00184 * 25 24 23 45 45 H 1.09007 * 109.46771 * 59.99266 * 26 24 23 46 46 H 1.08992 * 109.47486 * 179.97438 * 26 24 23 47 47 H 1.09001 * 109.47263 * 300.00204 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6012 1.1409 0.0005 5 7 4.3477 2.3081 0.0000 6 6 5.8072 2.2442 -0.1099 7 6 6.4114 2.1566 1.2679 8 1 5.7722 2.1496 2.1383 9 6 7.7801 2.0853 1.4171 10 7 8.3075 2.0083 2.6195 11 14 8.8857 2.0965 -0.0886 12 1 9.2449 3.4968 -0.4284 13 1 10.1212 1.3243 0.1986 14 1 8.1698 1.4776 -1.2330 15 6 3.6775 3.6062 0.1094 16 6 3.3438 4.1170 -1.2685 17 6 4.2504 4.9021 -1.9649 18 6 3.8989 5.3535 -3.2276 19 6 2.6698 4.9994 -3.7514 20 7 1.8343 4.2472 -3.0623 21 6 2.1329 3.8046 -1.8564 22 7 4.2024 -0.0454 -0.0040 23 6 3.4956 -1.1572 0.0011 24 6 4.2140 -2.4820 0.0017 25 6 3.8226 -3.2739 1.2510 26 6 3.8237 -3.2745 -1.2474 27 7 2.1777 -1.1432 0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6862 2.1380 -0.0007 32 1 6.0899 1.3639 -0.6873 33 1 6.1734 3.1403 -0.6109 34 1 9.2704 1.9585 2.7244 35 1 4.3374 4.3148 0.6097 36 1 2.7600 3.4939 0.6872 37 1 5.2060 5.1590 -1.5320 38 1 4.5788 5.9702 -3.7968 39 1 2.3902 5.3432 -4.7364 40 1 1.4232 3.1902 -1.3224 41 1 5.2906 -2.3115 0.0021 42 1 4.3426 -4.2319 1.2516 43 1 4.1008 -2.7093 2.1410 44 1 2.7461 -3.4444 1.2506 45 1 4.1025 -2.7103 -2.1375 46 1 4.3436 -4.2324 -1.2472 47 1 2.7471 -3.4450 -1.2479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164010128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:10 Heat of formation + Delta-G solvation = 64.764402 kcal Electronic energy + Delta-G solvation = -28037.510785 eV Core-core repulsion = 24412.496212 eV Total energy + Delta-G solvation = -3625.014574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.03693 -41.09565 -38.50617 -36.47897 -34.90142 -34.85095 -33.43570 -32.61100 -32.01144 -30.19876 -28.76613 -28.02890 -27.32475 -25.20901 -24.70988 -24.25159 -23.22744 -21.97321 -20.94940 -19.11669 -18.59119 -18.27555 -17.80611 -17.14874 -16.68495 -16.41634 -16.15003 -16.08001 -15.76463 -15.53053 -15.03819 -14.72552 -14.59212 -14.47302 -14.16800 -14.11247 -13.99465 -13.67225 -13.53675 -13.32876 -13.17276 -13.05602 -12.90531 -12.74595 -12.51613 -12.35492 -12.22548 -12.06731 -11.82324 -11.79513 -11.42936 -11.32261 -10.81380 -10.79897 -10.52312 -10.35818 -10.02778 -9.94110 -8.74268 -8.32306 -6.35990 0.07415 0.20742 0.30602 0.56632 1.28700 1.33917 1.43758 2.05897 2.29831 2.89113 2.99077 3.02252 3.10166 3.38875 3.46536 3.74453 3.76181 3.90697 4.02699 4.04250 4.09303 4.23814 4.24911 4.31887 4.38153 4.51017 4.59425 4.62742 4.64158 4.77023 4.82536 4.83368 4.84308 4.87502 4.88982 4.96247 4.99607 5.07730 5.16122 5.18380 5.30401 5.33847 5.37716 5.45968 5.64488 5.73396 5.82657 6.17681 6.44350 6.63141 6.65899 6.97300 7.26589 7.53592 8.84705 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007069 B = 0.006460 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3959.726005 B = 4333.502052 C = 7241.394711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.189 3.811 3 C -0.313 4.313 4 C 0.428 3.572 5 N -0.578 5.578 6 C 0.244 3.756 7 C -0.520 4.520 8 H 0.025 0.975 9 C 0.017 3.983 10 N -0.945 5.945 11 Si 0.940 3.060 12 H -0.254 1.254 13 H -0.283 1.283 14 H -0.258 1.258 15 C 0.167 3.833 16 C -0.161 4.161 17 C -0.073 4.073 18 C -0.168 4.168 19 C 0.090 3.910 20 N -0.507 5.507 21 C 0.102 3.898 22 N -0.602 5.602 23 C 0.350 3.650 24 C -0.032 4.032 25 C -0.126 4.126 26 C -0.123 4.123 27 N -0.569 5.569 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.023 0.977 33 H 0.037 0.963 34 H 0.267 0.733 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.164 0.836 39 H 0.184 0.816 40 H 0.162 0.838 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.030 0.970 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.086 0.914 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.045 0.828 -11.500 18.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 C -0.341 4.341 4 C 0.186 3.814 5 N -0.286 5.286 6 C 0.122 3.878 7 C -0.559 4.559 8 H 0.043 0.957 9 C -0.181 4.181 10 N -0.586 5.586 11 Si 0.763 3.237 12 H -0.178 1.178 13 H -0.209 1.209 14 H -0.182 1.182 15 C 0.044 3.956 16 C -0.165 4.165 17 C -0.099 4.099 18 C -0.188 4.188 19 C -0.067 4.067 20 N -0.215 5.215 21 C -0.054 4.054 22 N -0.327 5.327 23 C 0.081 3.919 24 C -0.053 4.053 25 C -0.184 4.184 26 C -0.181 4.181 27 N -0.290 5.290 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.177 0.823 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.156 0.844 38 H 0.182 0.818 39 H 0.201 0.799 40 H 0.179 0.821 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.049 0.951 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.105 0.895 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.113 -0.015 -11.767 18.375 hybrid contribution 1.735 1.155 0.555 2.157 sum -12.378 1.140 -11.213 16.740 Atomic orbital electron populations 1.20795 0.85076 1.04783 1.04462 1.22023 0.98879 0.87127 0.87330 1.22166 0.92391 1.01796 1.17752 1.18912 0.89017 0.86621 0.86895 1.46644 1.06173 1.02096 1.73695 1.19234 0.76688 0.96661 0.95257 1.21431 0.91935 1.50221 0.92329 0.95674 1.25710 0.99474 0.94108 0.98806 1.70045 1.12347 1.52075 1.24092 0.85829 0.78349 0.79573 0.79903 1.17806 1.20862 1.18198 1.20380 0.98984 0.83423 0.92800 1.21337 0.96437 0.99883 0.98805 1.21834 0.98961 0.94242 0.94875 1.22461 0.98791 1.01571 0.95935 1.23321 0.90163 0.92978 1.00212 1.67732 1.35255 1.10977 1.07568 1.22902 0.94944 0.96171 0.91431 1.67899 1.42576 0.98447 1.23744 1.23221 0.87141 0.93535 0.88005 1.20037 0.98357 0.88051 0.98851 1.21669 1.02683 0.99651 0.94404 1.21659 1.02676 0.99615 0.94158 1.68037 1.08563 1.30327 1.22112 0.88581 0.89785 0.88457 0.82305 0.95896 0.94475 0.92419 0.88963 0.88263 0.84370 0.81815 0.79895 0.82088 0.90870 0.89483 0.95091 0.91143 0.94265 0.89526 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 10.21 71.24 0.73 -1.08 16 2 C 0.19 5.73 6.81 42.42 0.29 6.02 16 3 C -0.31 -10.15 8.27 22.57 0.19 -9.97 16 4 C 0.43 17.61 7.38 133.16 0.98 18.60 16 5 N -0.58 -23.60 2.54 -712.01 -1.81 -25.41 16 6 C 0.24 11.62 4.23 85.63 0.36 11.98 16 7 C -0.52 -29.86 9.94 25.60 0.25 -29.60 16 8 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 9 C 0.02 0.98 5.47 84.65 0.46 1.44 16 10 N -0.95 -58.95 13.96 21.44 0.30 -58.65 16 11 Si 0.94 43.68 27.47 68.60 1.88 45.57 16 12 H -0.25 -10.81 7.11 99.48 0.71 -10.11 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.26 -11.62 6.54 99.48 0.65 -10.97 16 15 C 0.17 5.27 5.35 85.63 0.46 5.73 16 16 C -0.16 -4.45 5.48 -19.77 -0.11 -4.56 16 17 C -0.07 -1.84 9.86 22.47 0.22 -1.61 16 18 C -0.17 -3.42 10.11 22.36 0.23 -3.19 16 19 C 0.09 1.89 11.18 84.69 0.95 2.84 16 20 N -0.51 -13.15 10.36 -195.84 -2.03 -15.18 16 21 C 0.10 2.68 10.39 84.67 0.88 3.56 16 22 N -0.60 -27.25 9.18 -185.44 -1.70 -28.95 16 23 C 0.35 13.61 6.34 138.76 0.88 14.49 16 24 C -0.03 -1.06 3.25 -11.54 -0.04 -1.10 16 25 C -0.13 -3.55 9.09 71.98 0.65 -2.89 16 26 C -0.12 -3.18 9.09 71.98 0.65 -2.53 16 27 N -0.57 -19.60 9.74 -176.28 -1.72 -21.32 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 1.43 8.09 -2.39 -0.02 1.41 16 31 H 0.16 4.08 4.09 -2.91 -0.01 4.07 16 32 H 0.02 1.19 6.53 -2.39 -0.02 1.18 16 33 H 0.04 1.64 7.50 -2.39 -0.02 1.62 16 34 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.09 2.98 8.03 -2.39 -0.02 2.96 16 36 H 0.10 2.69 6.40 -2.38 -0.02 2.68 16 37 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 38 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 40 H 0.16 3.74 5.52 -2.91 -0.02 3.73 16 41 H 0.07 2.65 8.10 -2.39 -0.02 2.63 16 42 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.88 8.01 -2.39 -0.02 1.86 16 45 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.07 1.72 8.01 -2.39 -0.02 1.70 16 Total: -1.00 -76.08 386.14 3.88 -72.20 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.91 Total: 23.62 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 8.04 Total: 8.12 kcal Atomic # 7 Polarization: -142.55 SS G_CDS: -6.96 Total: -149.51 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.57 kcal Total: -76.08 3.88 -72.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.963 kcal (2) G-P(sol) polarization free energy of solvation -76.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds