Wall clock time and date at job start Tue Mar 31 2020 15:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 C 1.50701 * 109.47211 * 180.02562 * 3 2 1 5 5 C 1.38114 * 120.40020 * 124.99936 * 4 3 2 6 6 C 1.39620 * 118.33558 * 180.02562 * 5 4 3 7 7 N 1.38541 * 120.53635 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00244 * 184.99862 * 7 6 5 9 9 C 1.50701 * 109.47173 * 269.99809 * 8 7 6 10 10 H 1.07999 * 119.99726 * 359.97438 * 9 8 7 11 11 C 1.37866 * 120.00214 * 179.97438 * 9 8 7 12 12 N 1.31524 * 120.00109 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00289 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47291 * 60.00147 * 13 11 9 15 15 H 1.48500 * 109.47307 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47063 * 299.99848 * 13 11 9 17 17 C 1.46500 * 119.99891 * 4.99630 * 7 6 5 18 18 C 1.50700 * 109.47380 * 270.00609 * 17 7 6 19 19 C 1.38677 * 120.41537 * 270.26287 * 18 17 7 20 20 C 1.38625 * 118.42126 * 180.22222 * 19 18 17 21 21 C 1.38223 * 119.15978 * 359.46985 * 20 19 18 22 22 N 1.31856 * 120.76567 * 0.30777 * 21 20 19 23 23 C 1.31884 * 121.72562 * 359.97275 * 22 21 20 24 24 N 1.32996 * 118.93729 * 0.25049 * 6 5 4 25 25 C 1.31750 * 120.68308 * 359.48902 * 24 6 5 26 26 C 1.50701 * 119.08769 * 180.26605 * 25 24 6 27 27 N 1.31798 * 121.83101 * 0.52761 * 25 24 6 28 28 H 1.08997 * 109.46836 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46856 * 300.00260 * 1 2 3 30 30 H 1.09001 * 109.47014 * 60.00091 * 1 2 3 31 31 H 1.08997 * 109.47305 * 239.99889 * 2 1 3 32 32 H 1.09001 * 109.47014 * 119.99909 * 2 1 3 33 33 H 1.08997 * 109.47097 * 59.99762 * 3 2 1 34 34 H 1.09001 * 109.47078 * 299.99870 * 3 2 1 35 35 H 1.08000 * 120.83612 * 0.04298 * 5 4 3 36 36 H 1.09001 * 109.47175 * 29.99936 * 8 7 6 37 37 H 1.08999 * 109.47090 * 149.99779 * 8 7 6 38 38 H 0.96992 * 120.00284 * 179.97438 * 12 11 9 39 39 H 1.08993 * 109.47314 * 149.99854 * 17 7 6 40 40 H 1.09007 * 109.46809 * 29.99993 * 17 7 6 41 41 H 1.08003 * 120.78603 * 359.97006 * 19 18 17 42 42 H 1.08002 * 120.42343 * 179.75479 * 20 19 18 43 43 H 1.08005 * 119.61951 * 180.28273 * 21 20 19 44 44 H 1.07998 * 119.61861 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47102 * 270.25822 * 26 25 24 46 46 H 1.09003 * 109.46883 * 30.24934 * 26 25 24 47 47 H 1.08994 * 109.47617 * 150.25432 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2455 2.1259 -0.9766 6 6 5.6408 2.0966 -0.9364 7 7 6.3868 2.7658 -1.8930 8 6 7.8463 2.6381 -1.9050 9 6 8.4519 3.7156 -1.0429 10 1 7.8136 4.4248 -0.5369 11 6 9.8208 3.7960 -0.9000 12 7 10.5982 2.9327 -1.5165 13 14 10.5715 5.1312 0.1692 14 1 10.0733 4.9893 1.5610 15 1 12.0507 5.0011 0.1579 16 1 10.1872 6.4642 -0.3607 17 6 5.7163 3.6009 -2.8925 18 6 5.3811 2.7661 -4.1015 19 6 6.2867 2.6460 -5.1448 20 6 5.9338 1.8715 -6.2390 21 6 4.7042 1.2401 -6.2488 22 7 3.8698 1.3730 -5.2366 23 6 4.1697 2.1061 -4.1821 24 7 6.2424 1.4115 0.0319 25 6 5.5360 0.7778 0.9458 26 6 6.2548 0.0174 2.0303 27 7 4.2181 0.7863 0.9352 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.7255 2.6696 -1.7515 36 1 8.1287 1.6599 -1.5159 37 1 8.2116 2.7421 -2.9267 38 1 11.5613 2.9895 -1.4163 39 1 6.3765 4.4169 -3.1861 40 1 4.7995 4.0101 -2.4680 41 1 7.2426 3.1474 -5.1076 42 1 6.6128 1.7590 -7.0713 43 1 4.4236 0.6311 -7.0954 44 1 3.4607 2.1911 -3.3719 45 1 6.4276 -1.0075 1.7020 46 1 7.2107 0.4981 2.2386 47 1 5.6463 0.0116 2.9346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:41 Heat of formation + Delta-G solvation = 75.666132 kcal Electronic energy + Delta-G solvation = -27723.560772 eV Core-core repulsion = 24099.018933 eV Total energy + Delta-G solvation = -3624.541839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59997 -39.93806 -36.90013 -35.43948 -33.07317 -32.78887 -32.31360 -31.71553 -30.84423 -28.36427 -27.89194 -26.74566 -25.70931 -23.56964 -23.08470 -22.39542 -21.80245 -21.11679 -20.00117 -17.18457 -17.12365 -16.62198 -16.36134 -15.93058 -15.38841 -15.06610 -14.74941 -14.72138 -14.44287 -14.26794 -13.73343 -13.51244 -13.44823 -13.25877 -12.91590 -12.85166 -12.57982 -12.37844 -12.04321 -11.91592 -11.85665 -11.55977 -11.41456 -11.24573 -11.19228 -10.99954 -10.71499 -10.65568 -10.39289 -10.17303 -10.00312 -9.68368 -9.51303 -9.36784 -8.99513 -8.89789 -8.49024 -8.40390 -7.19884 -6.08466 -4.14254 1.15540 1.39248 1.61788 2.02932 3.27277 3.32274 3.34911 3.54353 4.02635 4.37124 4.40820 4.44892 4.50587 4.71452 4.87972 4.93625 5.03303 5.09191 5.10028 5.14037 5.20876 5.24569 5.38520 5.46831 5.55899 5.59654 5.71567 5.75629 5.78406 5.80103 5.84118 5.94370 5.96246 6.00536 6.02347 6.18525 6.22402 6.29939 6.34751 6.37514 6.42614 6.73867 6.78270 7.05298 7.35722 7.55952 7.80352 8.03213 8.06531 8.14263 8.19610 8.87515 9.01783 9.50290 10.97978 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008338 B = 0.005041 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3357.400509 B = 5553.181010 C = 8186.166242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.065 4.065 4 C 0.199 3.801 5 C -0.319 4.319 6 C 0.454 3.546 7 N -0.570 5.570 8 C 0.256 3.744 9 C -0.522 4.522 10 H 0.055 0.945 11 C 0.064 3.936 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.278 1.278 17 C 0.166 3.834 18 C -0.150 4.150 19 C -0.054 4.054 20 C -0.174 4.174 21 C 0.091 3.909 22 N -0.488 5.488 23 C 0.107 3.893 24 N -0.552 5.552 25 C 0.355 3.645 26 C -0.080 4.080 27 N -0.576 5.576 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.047 0.953 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.537 -2.767 -3.701 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.103 4.103 4 C 0.057 3.943 5 C -0.348 4.348 6 C 0.210 3.790 7 N -0.278 5.278 8 C 0.137 3.863 9 C -0.561 4.561 10 H 0.074 0.926 11 C -0.138 4.138 12 N -0.533 5.533 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.041 3.959 18 C -0.154 4.154 19 C -0.081 4.081 20 C -0.194 4.194 21 C -0.066 4.066 22 N -0.197 5.197 23 C -0.051 4.051 24 N -0.276 5.276 25 C 0.085 3.915 26 C -0.139 4.139 27 N -0.297 5.297 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.169 0.831 44 H 0.170 0.830 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.512 -3.607 -3.239 15.300 hybrid contribution 1.137 1.677 -0.198 2.035 sum -13.375 -1.931 -3.436 13.944 Atomic orbital electron populations 1.21782 0.95915 1.01513 1.01614 1.21394 0.95113 0.95762 1.02938 1.20523 0.88655 0.98286 1.02803 1.21090 0.96100 0.88847 0.88307 1.21933 0.94059 1.12639 1.06187 1.18525 0.87377 0.86507 0.86629 1.47100 1.08413 1.46004 1.26235 1.19333 0.71200 0.98746 0.97024 1.21346 0.91478 1.13901 1.29379 0.92649 1.24882 0.96954 0.96173 0.95783 1.69916 1.04505 1.35897 1.43028 0.86602 0.77954 0.81938 0.81170 1.20215 1.21204 1.20349 1.20259 0.98601 0.91759 0.85262 1.21498 0.95585 1.00924 0.97381 1.21643 0.98849 0.95513 0.92054 1.22139 0.98378 0.99241 0.99665 1.22714 0.90497 0.96940 0.96472 1.67675 1.34452 1.16328 1.01225 1.22782 0.94979 0.92011 0.95291 1.67973 1.40555 1.14012 1.05071 1.22853 0.86292 0.90168 0.92182 1.20468 1.00037 0.98936 0.94434 1.67948 1.09344 1.24977 1.27477 0.92834 0.92779 0.92842 0.92262 0.90766 0.90065 0.90631 0.85169 0.93463 0.95364 0.92676 0.88401 0.90243 0.84334 0.84897 0.83123 0.83031 0.90337 0.89711 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.11 -1.29 5.80 -26.73 -0.16 -1.45 16 3 C -0.06 -0.78 5.64 -27.88 -0.16 -0.94 16 4 C 0.20 3.23 6.20 -82.33 -0.51 2.72 16 5 C -0.32 -5.41 8.22 -39.11 -0.32 -5.73 16 6 C 0.45 9.30 7.38 -154.78 -1.14 8.16 16 7 N -0.57 -11.65 2.54 -176.40 -0.45 -12.10 16 8 C 0.26 6.30 5.16 -5.19 -0.03 6.28 16 9 C -0.52 -14.04 9.39 -34.44 -0.32 -14.36 16 10 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 13 Si 0.90 21.25 29.54 -169.99 -5.02 16.22 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.17 2.67 5.35 -5.19 -0.03 2.64 16 18 C -0.15 -2.26 5.48 -104.48 -0.57 -2.83 16 19 C -0.05 -0.77 9.86 -39.28 -0.39 -1.16 16 20 C -0.17 -2.17 10.11 -39.44 -0.40 -2.57 16 21 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 22 N -0.49 -7.22 10.36 -13.25 -0.14 -7.36 16 23 C 0.11 1.56 10.39 -17.55 -0.18 1.37 16 24 N -0.55 -12.16 9.21 -9.96 -0.09 -12.26 16 25 C 0.35 6.80 7.64 -157.23 -1.20 5.60 16 26 C -0.08 -1.23 10.32 36.01 0.37 -0.86 16 27 N -0.58 -10.23 9.93 -7.07 -0.07 -10.30 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.78 7.93 -51.93 -0.41 0.37 16 35 H 0.13 1.85 4.04 -52.49 -0.21 1.64 16 36 H 0.05 1.32 7.48 -51.93 -0.39 0.93 16 37 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.10 1.57 8.03 -51.93 -0.42 1.15 16 40 H 0.08 1.11 6.40 -51.93 -0.33 0.77 16 41 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 44 H 0.15 2.01 5.52 -52.49 -0.29 1.72 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -31.74 390.56 -11.19 -42.92 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.08 Total: 3.25 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -4.96 Total: -1.50 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -0.01 Total: -66.78 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.74 -11.19 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.590 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds