Wall clock time and date at job start Tue Mar 31 2020 15:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 C 1.50701 * 109.47211 * 180.02562 * 3 2 1 5 5 C 1.38114 * 120.40020 * 124.99936 * 4 3 2 6 6 C 1.39620 * 118.33558 * 180.02562 * 5 4 3 7 7 N 1.38541 * 120.53635 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00244 * 184.99862 * 7 6 5 9 9 C 1.50701 * 109.47173 * 269.99809 * 8 7 6 10 10 H 1.07999 * 119.99726 * 359.97438 * 9 8 7 11 11 C 1.37866 * 120.00214 * 179.97438 * 9 8 7 12 12 N 1.31524 * 120.00109 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00289 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47291 * 60.00147 * 13 11 9 15 15 H 1.48500 * 109.47307 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47063 * 299.99848 * 13 11 9 17 17 C 1.46500 * 119.99891 * 4.99630 * 7 6 5 18 18 C 1.50700 * 109.47380 * 270.00609 * 17 7 6 19 19 C 1.38677 * 120.41537 * 270.26287 * 18 17 7 20 20 C 1.38625 * 118.42126 * 180.22222 * 19 18 17 21 21 C 1.38223 * 119.15978 * 359.46985 * 20 19 18 22 22 N 1.31856 * 120.76567 * 0.30777 * 21 20 19 23 23 C 1.31884 * 121.72562 * 359.97275 * 22 21 20 24 24 N 1.32996 * 118.93729 * 0.25049 * 6 5 4 25 25 C 1.31750 * 120.68308 * 359.48902 * 24 6 5 26 26 C 1.50701 * 119.08769 * 180.26605 * 25 24 6 27 27 N 1.31798 * 121.83101 * 0.52761 * 25 24 6 28 28 H 1.08997 * 109.46836 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46856 * 300.00260 * 1 2 3 30 30 H 1.09001 * 109.47014 * 60.00091 * 1 2 3 31 31 H 1.08997 * 109.47305 * 239.99889 * 2 1 3 32 32 H 1.09001 * 109.47014 * 119.99909 * 2 1 3 33 33 H 1.08997 * 109.47097 * 59.99762 * 3 2 1 34 34 H 1.09001 * 109.47078 * 299.99870 * 3 2 1 35 35 H 1.08000 * 120.83612 * 0.04298 * 5 4 3 36 36 H 1.09001 * 109.47175 * 29.99936 * 8 7 6 37 37 H 1.08999 * 109.47090 * 149.99779 * 8 7 6 38 38 H 0.96992 * 120.00284 * 179.97438 * 12 11 9 39 39 H 1.08993 * 109.47314 * 149.99854 * 17 7 6 40 40 H 1.09007 * 109.46809 * 29.99993 * 17 7 6 41 41 H 1.08003 * 120.78603 * 359.97006 * 19 18 17 42 42 H 1.08002 * 120.42343 * 179.75479 * 20 19 18 43 43 H 1.08005 * 119.61951 * 180.28273 * 21 20 19 44 44 H 1.07998 * 119.61861 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47102 * 270.25822 * 26 25 24 46 46 H 1.09003 * 109.46883 * 30.24934 * 26 25 24 47 47 H 1.08994 * 109.47617 * 150.25432 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2455 2.1259 -0.9766 6 6 5.6408 2.0966 -0.9364 7 7 6.3868 2.7658 -1.8930 8 6 7.8463 2.6381 -1.9050 9 6 8.4519 3.7156 -1.0429 10 1 7.8136 4.4248 -0.5369 11 6 9.8208 3.7960 -0.9000 12 7 10.5982 2.9327 -1.5165 13 14 10.5715 5.1312 0.1692 14 1 10.0733 4.9893 1.5610 15 1 12.0507 5.0011 0.1579 16 1 10.1872 6.4642 -0.3607 17 6 5.7163 3.6009 -2.8925 18 6 5.3811 2.7661 -4.1015 19 6 6.2867 2.6460 -5.1448 20 6 5.9338 1.8715 -6.2390 21 6 4.7042 1.2401 -6.2488 22 7 3.8698 1.3730 -5.2366 23 6 4.1697 2.1061 -4.1821 24 7 6.2424 1.4115 0.0319 25 6 5.5360 0.7778 0.9458 26 6 6.2548 0.0174 2.0303 27 7 4.2181 0.7863 0.9352 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.7255 2.6696 -1.7515 36 1 8.1287 1.6599 -1.5159 37 1 8.2116 2.7421 -2.9267 38 1 11.5613 2.9895 -1.4163 39 1 6.3765 4.4169 -3.1861 40 1 4.7995 4.0101 -2.4680 41 1 7.2426 3.1474 -5.1076 42 1 6.6128 1.7590 -7.0713 43 1 4.4236 0.6311 -7.0954 44 1 3.4607 2.1911 -3.3719 45 1 6.4276 -1.0075 1.7020 46 1 7.2107 0.4981 2.2386 47 1 5.6463 0.0116 2.9346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164010231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:40 Heat of formation + Delta-G solvation = 59.623081 kcal Electronic energy + Delta-G solvation = -27724.256451 eV Core-core repulsion = 24099.018933 eV Total energy + Delta-G solvation = -3625.237518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.97099 -41.06742 -38.35562 -36.53208 -34.98255 -34.09752 -33.48394 -32.85392 -32.32859 -29.82937 -29.24139 -27.98259 -27.17924 -24.99349 -24.46830 -23.61781 -23.02004 -22.25645 -21.35636 -18.76342 -18.48016 -18.22563 -17.72554 -17.14586 -16.62818 -16.61091 -16.21427 -15.89383 -15.68621 -15.59148 -15.07339 -14.76265 -14.62184 -14.34005 -14.28892 -13.99480 -13.97580 -13.53327 -13.40719 -13.22003 -13.15845 -13.06296 -12.81916 -12.59770 -12.58939 -12.32204 -12.16750 -12.11822 -11.91148 -11.58604 -11.36214 -11.29681 -10.78707 -10.61336 -10.50870 -10.33477 -10.01204 -9.88047 -8.79278 -8.14762 -6.31958 0.08344 0.22357 0.31244 0.58999 1.36743 1.39476 1.46690 2.11606 2.40132 2.90550 3.00729 3.10964 3.21252 3.40753 3.48299 3.73866 3.78421 3.90864 4.03563 4.05510 4.16811 4.23677 4.25582 4.37234 4.47623 4.56385 4.62041 4.62997 4.67401 4.74501 4.80084 4.85127 4.89000 4.93651 4.98553 5.05785 5.10438 5.17553 5.23089 5.29317 5.33019 5.39498 5.53367 5.62874 5.70498 5.73919 5.96063 6.10716 6.40791 6.68104 6.79199 6.97186 7.36358 7.56766 8.87074 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008338 B = 0.005041 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3357.400509 B = 5553.181010 C = 8186.166242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.061 4.061 4 C 0.196 3.804 5 C -0.312 4.312 6 C 0.429 3.571 7 N -0.580 5.580 8 C 0.280 3.720 9 C -0.529 4.529 10 H 0.046 0.954 11 C 0.016 3.984 12 N -0.925 5.925 13 Si 0.958 3.042 14 H -0.280 1.280 15 H -0.280 1.280 16 H -0.266 1.266 17 C 0.168 3.832 18 C -0.161 4.161 19 C -0.071 4.071 20 C -0.170 4.170 21 C 0.090 3.910 22 N -0.506 5.506 23 C 0.102 3.898 24 N -0.600 5.600 25 C 0.337 3.663 26 C -0.076 4.076 27 N -0.575 5.575 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.158 0.842 36 H 0.006 0.994 37 H 0.017 0.983 38 H 0.265 0.735 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.132 0.868 42 H 0.162 0.838 43 H 0.185 0.815 44 H 0.163 0.837 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.783 -2.366 -4.107 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.099 4.099 4 C 0.053 3.947 5 C -0.340 4.340 6 C 0.186 3.814 7 N -0.288 5.288 8 C 0.159 3.841 9 C -0.568 4.568 10 H 0.065 0.935 11 C -0.183 4.183 12 N -0.565 5.565 13 Si 0.783 3.217 14 H -0.205 1.205 15 H -0.205 1.205 16 H -0.191 1.191 17 C 0.044 3.956 18 C -0.165 4.165 19 C -0.098 4.098 20 C -0.189 4.189 21 C -0.067 4.067 22 N -0.214 5.214 23 C -0.055 4.055 24 N -0.326 5.326 25 C 0.068 3.932 26 C -0.134 4.134 27 N -0.297 5.297 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.175 0.825 36 H 0.024 0.976 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.150 0.850 42 H 0.179 0.821 43 H 0.202 0.798 44 H 0.180 0.820 45 H 0.109 0.891 46 H 0.090 0.910 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.802 -3.200 -3.647 17.489 hybrid contribution 1.776 1.471 -0.107 2.309 sum -15.026 -1.728 -3.754 15.584 Atomic orbital electron populations 1.21736 0.93726 1.02237 1.02553 1.21340 0.96927 0.94887 1.01645 1.20675 0.85395 0.99185 1.04612 1.21855 0.98191 0.87418 0.87244 1.22154 0.92455 1.12510 1.06921 1.18923 0.88872 0.86978 0.86623 1.46957 1.06857 1.47299 1.27656 1.18681 0.74180 0.95839 0.95398 1.21557 0.91769 1.14081 1.29430 0.93549 1.25663 0.97440 0.98235 0.96942 1.70028 1.04736 1.37459 1.44321 0.85623 0.77271 0.79740 0.79073 1.20527 1.20523 1.19052 1.20381 0.98934 0.91259 0.85014 1.21379 0.96285 1.01666 0.97144 1.21790 0.98702 0.96319 0.92981 1.22448 0.98822 0.97959 0.99670 1.23305 0.90099 0.96514 0.96742 1.67724 1.35260 1.16670 1.01774 1.22896 0.94906 0.91915 0.95762 1.67949 1.42416 1.15645 1.06552 1.23460 0.87132 0.90227 0.92387 1.20532 0.99489 0.98948 0.94441 1.68071 1.08632 1.25037 1.27930 0.92305 0.91895 0.91821 0.93460 0.92229 0.88733 0.88225 0.82474 0.97638 0.96525 0.92566 0.89036 0.87963 0.85009 0.82052 0.79812 0.82028 0.89069 0.90967 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.45 16 2 C -0.11 -2.26 5.80 30.59 0.18 -2.08 16 3 C -0.06 -1.30 5.64 29.85 0.17 -1.13 16 4 C 0.20 6.07 6.20 42.42 0.26 6.33 16 5 C -0.31 -10.32 8.22 22.57 0.19 -10.13 16 6 C 0.43 17.94 7.38 133.16 0.98 18.92 16 7 N -0.58 -24.43 2.54 -712.01 -1.81 -26.24 16 8 C 0.28 14.51 5.16 85.63 0.44 14.95 16 9 C -0.53 -29.44 9.39 25.60 0.24 -29.20 16 10 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 11 C 0.02 0.91 5.46 84.65 0.46 1.38 16 12 N -0.93 -54.26 13.29 21.44 0.28 -53.98 16 13 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 C 0.17 5.43 5.35 85.63 0.46 5.89 16 18 C -0.16 -4.80 5.48 -19.77 -0.11 -4.91 16 19 C -0.07 -2.04 9.86 22.47 0.22 -1.82 16 20 C -0.17 -3.95 10.11 22.36 0.23 -3.72 16 21 C 0.09 2.09 11.18 84.69 0.95 3.04 16 22 N -0.51 -14.04 10.36 -195.84 -2.03 -16.07 16 23 C 0.10 2.85 10.39 84.67 0.88 3.73 16 24 N -0.60 -27.43 9.21 -185.44 -1.71 -29.14 16 25 C 0.34 13.14 7.64 138.76 1.06 14.20 16 26 C -0.08 -2.36 10.32 71.24 0.73 -1.62 16 27 N -0.58 -20.13 9.93 -176.28 -1.75 -21.88 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.39 7.98 -2.39 -0.02 1.38 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 1.68 7.93 -2.39 -0.02 1.66 16 35 H 0.16 4.16 4.04 -2.91 -0.01 4.14 16 36 H 0.01 0.33 7.48 -2.39 -0.02 0.31 16 37 H 0.02 0.89 8.07 -2.39 -0.02 0.87 16 38 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 39 H 0.09 3.02 8.03 -2.39 -0.02 3.00 16 40 H 0.10 2.76 6.40 -2.38 -0.02 2.74 16 41 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 42 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 43 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 44 H 0.16 3.99 5.52 -2.91 -0.02 3.97 16 45 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 46 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -70.91 390.56 4.03 -66.88 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.96 Total: 21.89 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 8.05 Total: 12.37 kcal Atomic # 7 Polarization: -140.29 SS G_CDS: -7.01 Total: -147.30 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -70.91 4.03 -66.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.499 kcal (2) G-P(sol) polarization free energy of solvation -70.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds