Wall clock time and date at job start Tue Mar 31 2020 15:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 C 1.52998 * 109.46962 * 240.00021 * 2 1 3 5 5 C 1.50697 * 109.46867 * 119.99803 * 2 1 3 6 6 C 1.38126 * 120.40158 * 75.28361 * 5 2 1 7 7 C 1.39618 * 118.33204 * 180.23672 * 6 5 2 8 8 N 1.38544 * 120.53086 * 179.75729 * 7 6 5 9 9 C 1.46497 * 120.00202 * 184.71908 * 8 7 6 10 10 C 1.50705 * 109.47461 * 270.00234 * 9 8 7 11 11 H 1.08001 * 119.99453 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99993 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99475 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47168 * 89.99996 * 14 12 10 16 16 H 1.48507 * 109.46689 * 209.99480 * 14 12 10 17 17 H 1.48493 * 109.47498 * 329.99595 * 14 12 10 18 18 C 1.46500 * 119.99731 * 4.72223 * 8 7 6 19 19 C 1.50700 * 109.47380 * 90.00284 * 18 8 7 20 20 C 1.38677 * 120.41537 * 270.26287 * 19 18 8 21 21 C 1.38625 * 118.42126 * 180.22222 * 20 19 18 22 22 C 1.38223 * 119.15978 * 359.46985 * 21 20 19 23 23 N 1.31856 * 120.76567 * 0.30777 * 22 21 20 24 24 C 1.31884 * 121.72562 * 359.97275 * 23 22 21 25 25 N 1.32996 * 118.94143 * 359.48490 * 7 6 5 26 26 C 1.31754 * 120.68042 * 0.24941 * 25 7 6 27 27 N 1.31784 * 121.83596 * 0.02747 * 26 25 7 28 28 H 1.09004 * 109.46985 * 300.00369 * 1 2 3 29 29 H 1.08997 * 109.46600 * 60.00055 * 1 2 3 30 30 H 1.08994 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47180 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46935 * 300.00049 * 3 2 1 33 33 H 1.08998 * 109.47146 * 59.99541 * 3 2 1 34 34 H 1.09000 * 109.46892 * 299.99649 * 4 2 1 35 35 H 1.08989 * 109.47420 * 60.00176 * 4 2 1 36 36 H 1.09004 * 109.46662 * 180.02562 * 4 2 1 37 37 H 1.07997 * 120.83315 * 359.97039 * 6 5 2 38 38 H 1.09007 * 109.47089 * 30.00161 * 9 8 7 39 39 H 1.08999 * 109.47460 * 149.99826 * 9 8 7 40 40 H 0.97003 * 119.99747 * 180.02562 * 13 12 10 41 41 H 1.08993 * 109.47314 * 329.99529 * 18 8 7 42 42 H 1.09007 * 109.46809 * 209.99669 * 18 8 7 43 43 H 1.08003 * 120.78603 * 359.97006 * 20 19 18 44 44 H 1.08002 * 120.42343 * 179.75479 * 21 20 19 45 45 H 1.08005 * 119.61951 * 180.28273 * 22 21 20 46 46 H 1.07998 * 119.61861 * 180.02562 * 24 23 22 47 47 H 1.07997 * 119.07771 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.9799 -2.0882 1.3125 7 6 2.4524 -2.7012 2.4745 8 7 2.4168 -4.0798 2.6073 9 6 2.8186 -4.7047 3.8699 10 6 4.2964 -4.9985 3.8372 11 1 4.8780 -4.7453 2.9630 12 6 4.9057 -5.5913 4.9227 13 7 4.1973 -5.8999 5.9869 14 14 6.7375 -5.9546 4.8823 15 1 7.4856 -4.7873 5.4142 16 1 7.0238 -7.1485 5.7178 17 1 7.1594 -6.2170 3.4830 18 6 1.9774 -4.9127 1.4850 19 6 3.1667 -5.2778 0.6345 20 6 3.5525 -4.4635 -0.4196 21 6 4.6497 -4.8412 -1.1779 22 6 5.3248 -6.0030 -0.8535 23 7 4.9323 -6.7507 0.1591 24 6 3.8899 -6.4253 0.8985 25 7 2.9422 -1.9410 3.4497 26 6 2.9779 -0.6298 3.3264 27 7 2.5348 -0.0209 2.2449 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.5795 -2.6762 0.5000 38 1 2.6010 -4.0276 4.6959 39 1 2.2664 -5.6344 4.0072 40 1 4.6261 -6.3166 6.7508 41 1 1.2561 -4.3601 0.8831 42 1 1.5116 -5.8210 1.8672 43 1 3.0084 -3.5586 -0.6470 44 1 4.9759 -4.2331 -2.0087 45 1 6.1835 -6.3019 -1.4365 46 1 3.5985 -7.0626 1.7203 47 1 3.3816 -0.0374 4.1342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:58 Heat of formation + Delta-G solvation = 83.078279 kcal Electronic energy + Delta-G solvation = -28508.560249 eV Core-core repulsion = 24884.339825 eV Total energy + Delta-G solvation = -3624.220424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.67639 -39.78393 -37.33615 -36.30222 -32.99741 -32.57992 -31.76928 -31.09262 -30.40865 -27.63531 -27.36802 -27.28479 -25.69400 -24.06950 -23.21157 -23.08983 -22.08156 -21.14014 -19.06805 -17.12433 -16.89657 -16.64716 -16.39139 -15.91112 -15.32772 -14.89899 -14.85203 -14.62925 -14.53511 -13.92471 -13.76755 -13.67159 -13.52546 -13.23902 -13.09982 -12.75173 -12.44028 -12.30087 -12.12842 -11.82647 -11.69995 -11.63576 -11.36041 -11.11788 -11.06270 -11.00739 -10.86732 -10.64961 -10.44881 -10.14364 -9.93626 -9.51577 -9.50914 -9.18165 -9.10211 -8.68150 -8.46946 -8.40754 -7.20165 -6.04562 -4.08663 1.38383 1.57821 1.60726 2.00780 3.31866 3.37897 3.43424 3.59546 4.21563 4.32722 4.42115 4.46314 4.68747 4.76804 4.89846 4.98730 5.02532 5.12369 5.12829 5.18917 5.23038 5.30370 5.38056 5.51351 5.53699 5.56606 5.62608 5.69948 5.76587 5.79526 5.82952 5.90243 5.92377 6.00317 6.08647 6.10822 6.20104 6.26082 6.35453 6.42880 6.53506 6.70311 7.00081 7.03553 7.35298 7.53636 7.83947 8.05201 8.13161 8.21141 8.33113 8.90886 8.99008 9.56129 11.02046 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.004993 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.061098 B = 5607.051831 C = 7046.725657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.018 4.018 3 C -0.124 4.124 4 C -0.139 4.139 5 C 0.206 3.794 6 C -0.309 4.309 7 C 0.451 3.549 8 N -0.571 5.571 9 C 0.252 3.748 10 C -0.512 4.512 11 H 0.053 0.947 12 C 0.066 3.934 13 N -0.894 5.894 14 Si 0.888 3.112 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.168 3.832 19 C -0.148 4.148 20 C -0.066 4.066 21 C -0.185 4.185 22 C 0.093 3.907 23 N -0.488 5.488 24 C 0.145 3.855 25 N -0.553 5.553 26 C 0.332 3.668 27 N -0.577 5.577 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.130 0.870 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.148 0.852 46 H 0.159 0.841 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 7.528 -15.203 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.019 4.019 3 C -0.182 4.182 4 C -0.197 4.197 5 C 0.063 3.937 6 C -0.338 4.338 7 C 0.207 3.793 8 N -0.278 5.278 9 C 0.133 3.867 10 C -0.551 4.551 11 H 0.072 0.928 12 C -0.136 4.136 13 N -0.534 5.534 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.044 3.956 19 C -0.151 4.151 20 C -0.093 4.093 21 C -0.205 4.205 22 C -0.064 4.064 23 N -0.197 5.197 24 C -0.012 4.012 25 N -0.276 5.276 26 C 0.041 3.959 27 N -0.297 5.297 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.148 0.852 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.165 0.835 46 H 0.177 0.823 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.097 6.925 -14.026 16.789 hybrid contribution 0.611 0.045 -0.606 0.861 sum -5.487 6.970 -14.632 17.111 Atomic orbital electron populations 1.21837 0.93274 1.02101 1.02037 1.19458 0.95673 0.95880 0.90915 1.21643 1.01224 0.93912 1.01377 1.21922 1.01406 1.00192 0.96152 1.20960 0.89887 0.89706 0.93150 1.21832 1.14589 0.96227 1.01139 1.18548 0.86292 0.86180 0.88290 1.47172 1.65372 1.00448 1.14793 1.19413 0.95296 0.92964 0.78981 1.21303 0.93386 1.39237 1.01218 0.92827 1.24830 0.97871 0.95651 0.95218 1.69915 1.35774 1.42458 1.05221 0.86635 0.85850 0.77734 0.78170 1.20777 1.21170 1.19788 1.20250 0.92391 0.95737 0.87257 1.21290 1.00546 0.96610 0.96683 1.21480 0.95932 0.98025 0.93847 1.21990 0.97731 0.98939 1.01805 1.22683 0.98288 0.91410 0.93998 1.67721 1.13873 1.32784 1.05278 1.22740 0.88972 0.94243 0.95289 1.68168 1.21245 1.06736 1.31457 1.24591 0.90257 0.87420 0.93607 1.68141 1.17971 1.41194 1.02422 0.92367 0.92041 0.92450 0.92630 0.93285 0.91558 0.92365 0.91975 0.92409 0.85217 0.93305 0.95144 0.92801 0.90529 0.88989 0.85488 0.85485 0.83509 0.82341 0.79837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.42 37.16 0.31 -1.02 16 2 C -0.02 -0.21 0.88 -155.66 -0.14 -0.35 16 3 C -0.12 -1.37 7.83 37.16 0.29 -1.07 16 4 C -0.14 -1.35 8.09 37.16 0.30 -1.05 16 5 C 0.21 3.11 5.56 -82.33 -0.46 2.65 16 6 C -0.31 -4.88 7.67 -39.11 -0.30 -5.18 16 7 C 0.45 8.79 7.38 -154.77 -1.14 7.65 16 8 N -0.57 -11.26 2.54 -176.40 -0.45 -11.71 16 9 C 0.25 6.08 5.20 -5.19 -0.03 6.06 16 10 C -0.51 -13.66 8.83 -34.44 -0.30 -13.97 16 11 H 0.05 1.51 7.58 -52.49 -0.40 1.11 16 12 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 13 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 14 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 15 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.17 2.62 5.46 -5.19 -0.03 2.59 16 19 C -0.15 -2.40 5.48 -104.48 -0.57 -2.97 16 20 C -0.07 -0.96 9.68 -39.28 -0.38 -1.34 16 21 C -0.18 -2.52 10.11 -39.44 -0.40 -2.92 16 22 C 0.09 1.41 11.18 -17.55 -0.20 1.22 16 23 N -0.49 -8.90 10.36 -13.25 -0.14 -9.04 16 24 C 0.14 2.62 10.07 -17.55 -0.18 2.44 16 25 N -0.55 -11.65 9.32 -13.81 -0.13 -11.78 16 26 C 0.33 5.94 12.28 -92.20 -1.13 4.81 16 27 N -0.58 -9.59 9.19 -10.88 -0.10 -9.69 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 34 H 0.06 0.54 6.50 -51.93 -0.34 0.20 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.13 1.74 3.78 -52.49 -0.20 1.54 16 38 H 0.05 1.32 7.48 -51.93 -0.39 0.94 16 39 H 0.03 0.75 7.89 -51.93 -0.41 0.34 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.08 0.98 6.01 -51.93 -0.31 0.66 16 42 H 0.09 1.33 7.85 -51.93 -0.41 0.92 16 43 H 0.13 1.60 6.05 -52.48 -0.32 1.28 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.15 1.78 8.06 -52.48 -0.42 1.35 16 46 H 0.16 2.93 8.06 -52.49 -0.42 2.50 16 47 H 0.19 2.77 8.06 -52.49 -0.42 2.34 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -31.74 383.69 -10.73 -42.46 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.96 Total: 2.53 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -4.45 Total: -0.73 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -0.08 Total: -67.13 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.74 -10.73 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.542 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds