Wall clock time and date at job start Tue Mar 31 2020 15:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47246 * 2 1 4 4 C 1.52998 * 109.46962 * 240.00021 * 2 1 3 5 5 C 1.50697 * 109.46867 * 119.99803 * 2 1 3 6 6 C 1.38126 * 120.40158 * 75.28361 * 5 2 1 7 7 C 1.39618 * 118.33204 * 180.23672 * 6 5 2 8 8 N 1.38544 * 120.53086 * 179.75729 * 7 6 5 9 9 C 1.46497 * 120.00202 * 184.71908 * 8 7 6 10 10 C 1.50705 * 109.47461 * 270.00234 * 9 8 7 11 11 H 1.08001 * 119.99453 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99993 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99475 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47168 * 89.99996 * 14 12 10 16 16 H 1.48507 * 109.46689 * 209.99480 * 14 12 10 17 17 H 1.48493 * 109.47498 * 329.99595 * 14 12 10 18 18 C 1.46500 * 119.99731 * 4.72223 * 8 7 6 19 19 C 1.50700 * 109.47380 * 90.00284 * 18 8 7 20 20 C 1.38677 * 120.41537 * 270.26287 * 19 18 8 21 21 C 1.38625 * 118.42126 * 180.22222 * 20 19 18 22 22 C 1.38223 * 119.15978 * 359.46985 * 21 20 19 23 23 N 1.31856 * 120.76567 * 0.30777 * 22 21 20 24 24 C 1.31884 * 121.72562 * 359.97275 * 23 22 21 25 25 N 1.32996 * 118.94143 * 359.48490 * 7 6 5 26 26 C 1.31754 * 120.68042 * 0.24941 * 25 7 6 27 27 N 1.31784 * 121.83596 * 0.02747 * 26 25 7 28 28 H 1.09004 * 109.46985 * 300.00369 * 1 2 3 29 29 H 1.08997 * 109.46600 * 60.00055 * 1 2 3 30 30 H 1.08994 * 109.46987 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47180 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46935 * 300.00049 * 3 2 1 33 33 H 1.08998 * 109.47146 * 59.99541 * 3 2 1 34 34 H 1.09000 * 109.46892 * 299.99649 * 4 2 1 35 35 H 1.08989 * 109.47420 * 60.00176 * 4 2 1 36 36 H 1.09004 * 109.46662 * 180.02562 * 4 2 1 37 37 H 1.07997 * 120.83315 * 359.97039 * 6 5 2 38 38 H 1.09007 * 109.47089 * 30.00161 * 9 8 7 39 39 H 1.08999 * 109.47460 * 149.99826 * 9 8 7 40 40 H 0.97003 * 119.99747 * 180.02562 * 13 12 10 41 41 H 1.08993 * 109.47314 * 329.99529 * 18 8 7 42 42 H 1.09007 * 109.46809 * 209.99669 * 18 8 7 43 43 H 1.08003 * 120.78603 * 359.97006 * 20 19 18 44 44 H 1.08002 * 120.42343 * 179.75479 * 21 20 19 45 45 H 1.08005 * 119.61951 * 180.28273 * 22 21 20 46 46 H 1.07998 * 119.61861 * 180.02562 * 24 23 22 47 47 H 1.07997 * 119.07771 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.9799 -2.0882 1.3125 7 6 2.4524 -2.7012 2.4745 8 7 2.4168 -4.0798 2.6073 9 6 2.8186 -4.7047 3.8699 10 6 4.2964 -4.9985 3.8372 11 1 4.8780 -4.7453 2.9630 12 6 4.9057 -5.5913 4.9227 13 7 4.1973 -5.8999 5.9869 14 14 6.7375 -5.9546 4.8823 15 1 7.4856 -4.7873 5.4142 16 1 7.0238 -7.1485 5.7178 17 1 7.1594 -6.2170 3.4830 18 6 1.9774 -4.9127 1.4850 19 6 3.1667 -5.2778 0.6345 20 6 3.5525 -4.4635 -0.4196 21 6 4.6497 -4.8412 -1.1779 22 6 5.3248 -6.0030 -0.8535 23 7 4.9323 -6.7507 0.1591 24 6 3.8899 -6.4253 0.8985 25 7 2.9422 -1.9410 3.4497 26 6 2.9779 -0.6298 3.3264 27 7 2.5348 -0.0209 2.2449 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.5795 -2.6762 0.5000 38 1 2.6010 -4.0276 4.6959 39 1 2.2664 -5.6344 4.0072 40 1 4.6261 -6.3166 6.7508 41 1 1.2561 -4.3601 0.8831 42 1 1.5116 -5.8210 1.8672 43 1 3.0084 -3.5586 -0.6470 44 1 4.9759 -4.2331 -2.0087 45 1 6.1835 -6.3019 -1.4365 46 1 3.5985 -7.0626 1.7203 47 1 3.3816 -0.0374 4.1342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164010251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:57 Heat of formation + Delta-G solvation = 67.257114 kcal Electronic energy + Delta-G solvation = -28509.246307 eV Core-core repulsion = 24884.339825 eV Total energy + Delta-G solvation = -3624.906482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98768 -40.99753 -38.55857 -37.52417 -34.93902 -33.94081 -33.04042 -32.34567 -31.86422 -29.33191 -28.20945 -28.07088 -27.08611 -25.56914 -24.62363 -24.35562 -23.53622 -22.40154 -20.21629 -18.70565 -18.32302 -18.20237 -17.72970 -17.13932 -16.64458 -16.54223 -16.13276 -16.03143 -15.66107 -15.22275 -15.00188 -14.83313 -14.57073 -14.49120 -14.43181 -14.19850 -13.89565 -13.37061 -13.24560 -13.12382 -13.03052 -12.86136 -12.69368 -12.51767 -12.48656 -12.18467 -12.07501 -12.05947 -11.85844 -11.82066 -11.35044 -11.18615 -10.73056 -10.59396 -10.52069 -10.33720 -9.89526 -9.84693 -8.75461 -8.13751 -6.26473 0.17815 0.29469 0.41137 0.64852 1.30517 1.32451 1.41936 2.16333 2.38835 2.98301 3.11374 3.13534 3.24665 3.51156 3.61022 3.74906 3.91296 3.95010 4.05670 4.10741 4.12820 4.16121 4.22438 4.41341 4.44317 4.61154 4.66417 4.73931 4.78607 4.85973 4.91097 4.92269 4.97731 5.03267 5.08636 5.10908 5.17497 5.20581 5.26209 5.31987 5.36271 5.48900 5.56551 5.64938 5.72837 5.85172 5.97450 6.13261 6.43363 6.71750 6.83330 7.11113 7.40143 7.59164 8.88007 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011370 B = 0.004993 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.061098 B = 5607.051831 C = 7046.725657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 C -0.121 4.121 4 C -0.138 4.138 5 C 0.204 3.796 6 C -0.295 4.295 7 C 0.428 3.572 8 N -0.580 5.580 9 C 0.274 3.726 10 C -0.501 4.501 11 H 0.037 0.963 12 C 0.021 3.979 13 N -0.923 5.923 14 Si 0.940 3.060 15 H -0.282 1.282 16 H -0.277 1.277 17 H -0.279 1.279 18 C 0.167 3.833 19 C -0.154 4.154 20 C -0.067 4.067 21 C -0.173 4.173 22 C 0.081 3.919 23 N -0.522 5.522 24 C 0.118 3.882 25 N -0.602 5.602 26 C 0.321 3.679 27 N -0.576 5.576 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.159 0.841 38 H 0.013 0.987 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.152 0.848 44 H 0.167 0.833 45 H 0.175 0.825 46 H 0.137 0.863 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 9.158 -18.764 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.019 4.019 3 C -0.179 4.179 4 C -0.195 4.195 5 C 0.061 3.939 6 C -0.323 4.323 7 C 0.185 3.815 8 N -0.288 5.288 9 C 0.153 3.847 10 C -0.540 4.540 11 H 0.055 0.945 12 C -0.178 4.178 13 N -0.564 5.564 14 Si 0.767 3.233 15 H -0.208 1.208 16 H -0.203 1.203 17 H -0.205 1.205 18 C 0.044 3.956 19 C -0.158 4.158 20 C -0.093 4.093 21 C -0.193 4.193 22 C -0.076 4.076 23 N -0.232 5.232 24 C -0.039 4.039 25 N -0.326 5.326 26 C 0.031 3.969 27 N -0.296 5.296 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.067 0.933 37 H 0.176 0.824 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.170 0.830 44 H 0.185 0.815 45 H 0.192 0.808 46 H 0.154 0.846 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.543 8.576 -17.613 20.654 hybrid contribution 0.737 -0.344 0.402 0.907 sum -5.806 8.231 -17.211 19.942 Atomic orbital electron populations 1.21839 0.91776 1.02635 1.02728 1.19644 0.96716 0.95792 0.89789 1.21622 1.00336 0.93879 1.02038 1.21943 1.00870 1.00821 0.95904 1.21733 0.88474 0.89840 0.93879 1.22001 1.13439 0.96618 1.00276 1.18908 0.87203 0.85880 0.89476 1.46973 1.66395 1.01071 1.14396 1.18783 0.93725 0.91659 0.80560 1.21372 0.94552 1.37962 1.00115 0.94518 1.25453 1.01049 0.96054 0.95250 1.69997 1.37010 1.43642 1.05763 0.85826 0.82126 0.77685 0.77628 1.20796 1.20252 1.20475 1.20476 0.92862 0.95900 0.86391 1.21312 1.00605 0.96350 0.97505 1.21805 0.96263 0.98246 0.93011 1.22417 0.96506 0.98276 1.02085 1.23248 0.99190 0.91808 0.93373 1.67644 1.14401 1.34444 1.06669 1.22558 0.90227 0.95374 0.95717 1.68105 1.23035 1.08271 1.33232 1.24943 0.90432 0.86809 0.94673 1.68255 1.17710 1.41184 1.02473 0.93733 0.89371 0.92022 0.93967 0.90579 0.92991 0.91457 0.89398 0.93308 0.82364 0.96864 0.96256 0.92748 0.87028 0.88753 0.83048 0.81527 0.80785 0.84574 0.78296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.42 71.98 0.61 -1.50 16 2 C -0.02 -0.36 0.88 -52.93 -0.05 -0.40 16 3 C -0.12 -2.31 7.83 71.98 0.56 -1.75 16 4 C -0.14 -2.01 8.09 71.98 0.58 -1.43 16 5 C 0.20 5.69 5.56 42.42 0.24 5.93 16 6 C -0.30 -8.68 7.67 22.58 0.17 -8.50 16 7 C 0.43 16.58 7.38 133.16 0.98 17.56 16 8 N -0.58 -23.16 2.54 -712.01 -1.81 -24.97 16 9 C 0.27 13.81 5.20 85.64 0.45 14.25 16 10 C -0.50 -27.65 8.83 25.60 0.23 -27.43 16 11 H 0.04 2.13 7.58 -2.91 -0.02 2.10 16 12 C 0.02 1.19 5.46 84.66 0.46 1.65 16 13 N -0.92 -54.64 13.29 21.45 0.28 -54.35 16 14 Si 0.94 46.53 29.54 68.60 2.03 48.56 16 15 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 18 C 0.17 5.07 5.46 85.63 0.47 5.54 16 19 C -0.15 -4.87 5.48 -19.77 -0.11 -4.98 16 20 C -0.07 -1.74 9.68 22.47 0.22 -1.52 16 21 C -0.17 -4.13 10.11 22.36 0.23 -3.90 16 22 C 0.08 2.29 11.18 84.69 0.95 3.23 16 23 N -0.52 -19.08 10.36 -195.84 -2.03 -21.11 16 24 C 0.12 4.36 10.07 84.67 0.85 5.21 16 25 N -0.60 -25.93 9.32 -197.62 -1.84 -27.77 16 26 C 0.32 11.60 12.28 180.90 2.22 13.82 16 27 N -0.58 -18.61 9.19 -188.34 -1.73 -20.34 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.05 1.13 7.88 -2.39 -0.02 1.11 16 34 H 0.07 0.87 6.50 -2.39 -0.02 0.85 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.16 3.60 3.78 -2.91 -0.01 3.58 16 38 H 0.01 0.76 7.48 -2.38 -0.02 0.74 16 39 H 0.02 1.01 7.89 -2.39 -0.02 0.99 16 40 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.11 2.53 6.01 -2.39 -0.01 2.52 16 42 H 0.09 2.76 7.85 -2.38 -0.02 2.74 16 43 H 0.15 3.11 6.05 -2.91 -0.02 3.09 16 44 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 45 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 46 H 0.14 5.42 8.06 -2.91 -0.02 5.39 16 47 H 0.20 6.13 8.06 -2.91 -0.02 6.11 16 Total: -1.00 -72.17 383.69 4.92 -67.25 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.97 Total: 16.95 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 9.06 Total: 15.78 kcal Atomic # 7 Polarization: -141.41 SS G_CDS: -7.13 Total: -148.53 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -72.17 4.92 -67.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.504 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds