Wall clock time and date at job start Tue Mar 31 2020 15:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47247 * 2 1 4 4 C 1.52998 * 109.46733 * 179.97438 * 3 2 1 5 5 C 1.50709 * 109.47021 * 180.02562 * 4 3 2 6 6 C 1.38108 * 120.40193 * 124.99915 * 5 4 3 7 7 C 1.39624 * 118.33167 * 180.02562 * 6 5 4 8 8 N 1.38544 * 120.53228 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00202 * 184.99792 * 8 7 6 10 10 C 1.50696 * 109.47452 * 270.00442 * 9 8 7 11 11 H 1.08005 * 119.99863 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00295 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99690 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99778 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47168 * 89.99749 * 14 12 10 16 16 H 1.48507 * 109.46689 * 209.99233 * 14 12 10 17 17 H 1.48493 * 109.47498 * 329.99348 * 14 12 10 18 18 C 1.46500 * 119.99731 * 5.00107 * 8 7 6 19 19 C 1.50700 * 109.47380 * 90.00284 * 18 8 7 20 20 C 1.38677 * 120.41537 * 270.26287 * 19 18 8 21 21 C 1.38625 * 118.42126 * 180.22222 * 20 19 18 22 22 C 1.38223 * 119.15978 * 359.46985 * 21 20 19 23 23 N 1.31856 * 120.76567 * 0.30777 * 22 21 20 24 24 C 1.31884 * 121.72562 * 359.97275 * 23 22 21 25 25 N 1.32987 * 118.94040 * 0.25134 * 7 6 5 26 26 C 1.31756 * 120.68270 * 359.49090 * 25 7 6 27 27 N 1.31784 * 121.83186 * 0.52472 * 26 25 7 28 28 H 1.09003 * 109.47225 * 300.00644 * 1 2 3 29 29 H 1.09007 * 109.46750 * 59.99935 * 1 2 3 30 30 H 1.08990 * 109.47110 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47372 * 239.99622 * 2 1 3 32 32 H 1.09000 * 109.47386 * 120.00044 * 2 1 3 33 33 H 1.08999 * 109.46911 * 59.99908 * 3 2 1 34 34 H 1.08998 * 109.46776 * 299.99550 * 3 2 1 35 35 H 1.08999 * 109.47390 * 60.00332 * 4 3 2 36 36 H 1.09000 * 109.47739 * 299.99394 * 4 3 2 37 37 H 1.08000 * 120.83552 * 0.04305 * 6 5 4 38 38 H 1.09007 * 109.47089 * 30.00161 * 9 8 7 39 39 H 1.08999 * 109.47460 * 149.99826 * 9 8 7 40 40 H 0.97003 * 119.99747 * 180.02562 * 13 12 10 41 41 H 1.08993 * 109.47314 * 329.99529 * 18 8 7 42 42 H 1.09007 * 109.46809 * 209.99669 * 18 8 7 43 43 H 1.08003 * 120.78603 * 359.97006 * 20 19 18 44 44 H 1.08002 * 120.42343 * 179.75479 * 21 20 19 45 45 H 1.08005 * 119.61951 * 180.28273 * 22 21 20 46 46 H 1.07998 * 119.61861 * 180.02562 * 24 23 22 47 47 H 1.07997 * 119.08150 * 180.26631 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0725 2.8633 0.0013 6 6 4.9492 3.2941 0.9775 7 6 5.3867 4.6194 0.9371 8 7 6.2659 5.0999 1.8940 9 6 6.6321 6.5183 1.9060 10 6 7.8501 6.7300 1.0442 11 1 8.3061 5.8917 0.5385 12 6 8.3830 7.9937 0.9022 13 7 7.8280 9.0144 1.5184 14 14 9.8932 8.2559 -0.1655 15 1 9.4699 8.5477 -1.5586 16 1 10.6802 9.3992 0.3625 17 1 10.7300 7.0293 -0.1491 18 6 6.8294 4.1894 2.8939 19 6 8.1152 3.6026 2.3710 20 6 8.1029 2.4241 1.6401 21 6 9.3101 1.9186 1.1830 22 6 10.4764 2.6070 1.4595 23 7 10.4498 3.7276 2.1537 24 6 9.3206 4.2348 2.6089 25 7 4.9417 5.4148 -0.0314 26 6 4.1091 4.9599 -0.9456 27 7 3.6778 3.7147 -0.9349 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 5.2881 2.6227 1.7526 38 1 5.8041 7.1106 1.5165 39 1 6.8515 6.8284 2.9277 40 1 8.2026 9.9035 1.4181 41 1 6.1196 3.3874 3.0960 42 1 7.0286 4.7387 3.8141 43 1 7.1753 1.9101 1.4355 44 1 9.3385 1.0010 0.6142 45 1 11.4206 2.2223 1.1030 46 1 9.3383 5.1552 3.1736 47 1 3.7675 5.6271 -1.7230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:01 Heat of formation + Delta-G solvation = 73.787098 kcal Electronic energy + Delta-G solvation = -27561.996736 eV Core-core repulsion = 23937.373416 eV Total energy + Delta-G solvation = -3624.623320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53323 -39.75749 -36.91134 -35.89866 -33.31078 -32.88864 -32.17939 -31.58837 -30.50496 -29.45123 -27.56309 -25.85790 -24.65824 -23.50014 -23.16365 -22.68083 -21.75477 -21.17662 -20.02527 -17.12360 -16.95026 -16.67662 -16.42341 -15.93381 -15.53625 -15.23489 -14.87572 -14.65060 -14.43946 -14.42478 -13.78025 -13.63839 -13.43334 -13.25564 -13.13733 -13.00106 -12.73463 -12.40475 -12.22658 -11.85050 -11.67985 -11.50579 -11.27937 -11.26312 -11.00005 -10.90790 -10.68289 -10.64915 -10.42296 -10.17119 -9.99959 -9.51766 -9.50074 -9.18702 -9.10683 -8.68273 -8.48184 -8.41397 -7.21494 -6.04996 -4.09149 1.38304 1.57175 1.60140 1.98966 3.31701 3.37721 3.43231 3.58975 4.21650 4.39510 4.45197 4.49326 4.69108 4.77291 4.86602 4.89003 4.99560 5.04171 5.10958 5.18012 5.21851 5.28465 5.30073 5.36279 5.46670 5.53917 5.56407 5.63920 5.69134 5.72570 5.78480 5.83993 5.93194 6.00235 6.03439 6.06571 6.12860 6.25703 6.32565 6.35236 6.53191 6.68908 6.99184 7.03400 7.34778 7.52590 7.83335 8.04202 8.12029 8.20566 8.33093 8.90068 8.98149 9.55644 11.01642 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.003893 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.959968 B = 7189.824322 C = 8668.230524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.065 4.065 5 C 0.195 3.805 6 C -0.312 4.312 7 C 0.452 3.548 8 N -0.570 5.570 9 C 0.252 3.748 10 C -0.513 4.513 11 H 0.054 0.946 12 C 0.066 3.934 13 N -0.894 5.894 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.168 3.832 19 C -0.148 4.148 20 C -0.066 4.066 21 C -0.185 4.185 22 C 0.093 3.907 23 N -0.488 5.488 24 C 0.145 3.855 25 N -0.554 5.554 26 C 0.334 3.666 27 N -0.579 5.579 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.049 0.951 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.148 0.852 46 H 0.159 0.841 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 -17.509 1.274 18.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.147 4.147 4 C -0.103 4.103 5 C 0.053 3.947 6 C -0.341 4.341 7 C 0.208 3.792 8 N -0.277 5.277 9 C 0.133 3.867 10 C -0.552 4.552 11 H 0.072 0.928 12 C -0.136 4.136 13 N -0.534 5.534 14 Si 0.717 3.283 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.043 3.957 19 C -0.151 4.151 20 C -0.092 4.092 21 C -0.205 4.205 22 C -0.064 4.064 23 N -0.196 5.196 24 C -0.013 4.013 25 N -0.277 5.277 26 C 0.043 3.957 27 N -0.301 5.301 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.148 0.852 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.165 0.835 46 H 0.177 0.823 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.572 -16.143 0.988 17.458 hybrid contribution 0.550 -0.570 -0.405 0.890 sum -6.022 -16.714 0.584 17.775 Atomic orbital electron populations 1.21765 0.96000 1.01290 1.01920 1.21548 0.95827 0.97004 1.01821 1.21494 0.93800 0.96408 1.03028 1.20509 0.96393 0.90696 1.02744 1.21087 0.89701 0.95341 0.88605 1.21903 1.09103 0.97365 1.05770 1.18553 0.86042 0.87941 0.86687 1.47190 1.42134 1.10997 1.27426 1.19416 0.96844 0.73132 0.97275 1.21307 1.11325 0.93490 1.29093 0.92807 1.24839 0.97219 0.95839 0.95716 1.69915 1.40677 0.99696 1.43068 0.86627 0.83055 0.77901 0.80765 1.20767 1.21166 1.19769 1.20259 0.90777 0.93316 0.91311 1.21285 0.97472 0.95747 1.00600 1.21464 0.98138 0.94988 0.94655 1.21993 0.93776 1.01917 1.02785 1.22687 0.97921 0.91202 0.94592 1.67722 1.30590 1.11327 1.09996 1.22745 0.86759 0.97200 0.94578 1.68170 1.16177 1.38439 1.04927 1.24586 0.87673 0.89748 0.93681 1.68120 1.29839 1.04810 1.27318 0.92827 0.92674 0.93009 0.92029 0.92212 0.92270 0.90640 0.90108 0.90721 0.85222 0.93286 0.95126 0.92787 0.90437 0.88978 0.85480 0.85477 0.83499 0.82333 0.79796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.01 5.93 -26.73 -0.16 -1.17 16 3 C -0.11 -1.12 5.08 -26.73 -0.14 -1.25 16 4 C -0.07 -0.72 5.65 -27.88 -0.16 -0.87 16 5 C 0.20 2.93 6.20 -82.32 -0.51 2.42 16 6 C -0.31 -4.94 8.26 -39.11 -0.32 -5.26 16 7 C 0.45 8.81 7.38 -154.78 -1.14 7.67 16 8 N -0.57 -11.26 2.54 -176.41 -0.45 -11.71 16 9 C 0.25 6.08 5.20 -5.20 -0.03 6.05 16 10 C -0.51 -13.69 8.83 -34.44 -0.30 -14.00 16 11 H 0.05 1.52 7.58 -52.48 -0.40 1.12 16 12 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 13 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 14 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 15 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 18 C 0.17 2.60 5.47 -5.19 -0.03 2.58 16 19 C -0.15 -2.39 5.48 -104.48 -0.57 -2.96 16 20 C -0.07 -0.95 9.69 -39.28 -0.38 -1.33 16 21 C -0.18 -2.52 10.11 -39.44 -0.40 -2.92 16 22 C 0.09 1.41 11.18 -17.55 -0.20 1.21 16 23 N -0.49 -8.88 10.36 -13.25 -0.14 -9.02 16 24 C 0.14 2.61 10.07 -17.55 -0.18 2.43 16 25 N -0.55 -11.67 9.31 -13.81 -0.13 -11.80 16 26 C 0.33 5.97 12.28 -92.20 -1.13 4.84 16 27 N -0.58 -9.63 10.03 -10.88 -0.11 -9.74 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.68 7.93 -51.93 -0.41 0.27 16 37 H 0.13 1.70 4.99 -52.49 -0.26 1.44 16 38 H 0.05 1.33 7.48 -51.93 -0.39 0.94 16 39 H 0.03 0.75 7.89 -51.93 -0.41 0.34 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.08 0.98 6.00 -51.93 -0.31 0.67 16 42 H 0.09 1.32 7.85 -51.93 -0.41 0.92 16 43 H 0.13 1.58 6.35 -52.48 -0.33 1.25 16 44 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.15 1.78 8.06 -52.48 -0.42 1.35 16 46 H 0.16 2.92 8.06 -52.49 -0.42 2.50 16 47 H 0.19 2.76 8.06 -52.49 -0.42 2.34 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -31.82 390.18 -11.72 -43.54 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.12 Total: 2.32 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -5.37 Total: -1.64 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -0.09 Total: -67.17 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.82 -11.72 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.330 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds