Wall clock time and date at job start Tue Mar 31 2020 15:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47247 * 2 1 4 4 C 1.52998 * 109.46733 * 179.97438 * 3 2 1 5 5 C 1.50709 * 109.47021 * 180.02562 * 4 3 2 6 6 C 1.38108 * 120.40193 * 124.99915 * 5 4 3 7 7 C 1.39624 * 118.33167 * 180.02562 * 6 5 4 8 8 N 1.38544 * 120.53228 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00202 * 184.99792 * 8 7 6 10 10 C 1.50696 * 109.47452 * 270.00442 * 9 8 7 11 11 H 1.08005 * 119.99863 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00295 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99690 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99778 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47168 * 89.99749 * 14 12 10 16 16 H 1.48507 * 109.46689 * 209.99233 * 14 12 10 17 17 H 1.48493 * 109.47498 * 329.99348 * 14 12 10 18 18 C 1.46500 * 119.99731 * 5.00107 * 8 7 6 19 19 C 1.50700 * 109.47380 * 90.00284 * 18 8 7 20 20 C 1.38677 * 120.41537 * 270.26287 * 19 18 8 21 21 C 1.38625 * 118.42126 * 180.22222 * 20 19 18 22 22 C 1.38223 * 119.15978 * 359.46985 * 21 20 19 23 23 N 1.31856 * 120.76567 * 0.30777 * 22 21 20 24 24 C 1.31884 * 121.72562 * 359.97275 * 23 22 21 25 25 N 1.32987 * 118.94040 * 0.25134 * 7 6 5 26 26 C 1.31756 * 120.68270 * 359.49090 * 25 7 6 27 27 N 1.31784 * 121.83186 * 0.52472 * 26 25 7 28 28 H 1.09003 * 109.47225 * 300.00644 * 1 2 3 29 29 H 1.09007 * 109.46750 * 59.99935 * 1 2 3 30 30 H 1.08990 * 109.47110 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47372 * 239.99622 * 2 1 3 32 32 H 1.09000 * 109.47386 * 120.00044 * 2 1 3 33 33 H 1.08999 * 109.46911 * 59.99908 * 3 2 1 34 34 H 1.08998 * 109.46776 * 299.99550 * 3 2 1 35 35 H 1.08999 * 109.47390 * 60.00332 * 4 3 2 36 36 H 1.09000 * 109.47739 * 299.99394 * 4 3 2 37 37 H 1.08000 * 120.83552 * 0.04305 * 6 5 4 38 38 H 1.09007 * 109.47089 * 30.00161 * 9 8 7 39 39 H 1.08999 * 109.47460 * 149.99826 * 9 8 7 40 40 H 0.97003 * 119.99747 * 180.02562 * 13 12 10 41 41 H 1.08993 * 109.47314 * 329.99529 * 18 8 7 42 42 H 1.09007 * 109.46809 * 209.99669 * 18 8 7 43 43 H 1.08003 * 120.78603 * 359.97006 * 20 19 18 44 44 H 1.08002 * 120.42343 * 179.75479 * 21 20 19 45 45 H 1.08005 * 119.61951 * 180.28273 * 22 21 20 46 46 H 1.07998 * 119.61861 * 180.02562 * 24 23 22 47 47 H 1.07997 * 119.08150 * 180.26631 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0725 2.8633 0.0013 6 6 4.9492 3.2941 0.9775 7 6 5.3867 4.6194 0.9371 8 7 6.2659 5.0999 1.8940 9 6 6.6321 6.5183 1.9060 10 6 7.8501 6.7300 1.0442 11 1 8.3061 5.8917 0.5385 12 6 8.3830 7.9937 0.9022 13 7 7.8280 9.0144 1.5184 14 14 9.8932 8.2559 -0.1655 15 1 9.4699 8.5477 -1.5586 16 1 10.6802 9.3992 0.3625 17 1 10.7300 7.0293 -0.1491 18 6 6.8294 4.1894 2.8939 19 6 8.1152 3.6026 2.3710 20 6 8.1029 2.4241 1.6401 21 6 9.3101 1.9186 1.1830 22 6 10.4764 2.6070 1.4595 23 7 10.4498 3.7276 2.1537 24 6 9.3206 4.2348 2.6089 25 7 4.9417 5.4148 -0.0314 26 6 4.1091 4.9599 -0.9456 27 7 3.6778 3.7147 -0.9349 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 5.2881 2.6227 1.7526 38 1 5.8041 7.1106 1.5165 39 1 6.8515 6.8284 2.9277 40 1 8.2026 9.9035 1.4181 41 1 6.1196 3.3874 3.0960 42 1 7.0286 4.7387 3.8141 43 1 7.1753 1.9101 1.4355 44 1 9.3385 1.0010 0.6142 45 1 11.4206 2.2223 1.1030 46 1 9.3383 5.1552 3.1736 47 1 3.7675 5.6271 -1.7230 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164010450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:00 Heat of formation + Delta-G solvation = 58.307146 kcal Electronic energy + Delta-G solvation = -27562.667997 eV Core-core repulsion = 23937.373416 eV Total energy + Delta-G solvation = -3625.294581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85783 -40.96917 -38.28528 -36.81394 -34.94080 -34.39317 -33.41487 -32.79538 -31.93522 -30.51096 -29.17259 -27.24331 -25.85844 -24.81717 -24.45092 -24.16834 -22.95518 -21.94996 -21.30664 -18.72491 -18.36921 -18.21008 -17.80749 -17.15010 -16.65197 -16.52779 -16.25626 -16.11401 -15.71446 -15.55432 -15.16405 -14.77156 -14.60452 -14.40922 -14.26724 -14.17259 -13.91129 -13.86902 -13.35744 -13.23538 -13.09268 -12.99255 -12.68180 -12.51158 -12.30849 -12.18268 -11.99610 -11.91379 -11.71065 -11.42209 -11.35889 -11.23805 -10.72066 -10.59510 -10.50103 -10.33021 -9.88866 -9.84903 -8.75827 -8.13970 -6.26782 0.18597 0.29791 0.42185 0.64156 1.30693 1.32567 1.42141 2.16771 2.38854 2.98998 3.11338 3.13289 3.36786 3.52781 3.61933 3.76576 3.93619 3.96617 4.08359 4.13198 4.16015 4.18440 4.27026 4.41797 4.45415 4.51747 4.61921 4.70665 4.74488 4.79752 4.88092 4.91421 4.92960 5.03656 5.08320 5.12743 5.20499 5.22134 5.27088 5.36434 5.37193 5.50310 5.57337 5.64302 5.72476 5.86120 5.97465 6.13100 6.43343 6.71488 6.83181 7.11898 7.39856 7.59288 8.87815 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012025 B = 0.003893 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.959968 B = 7189.824322 C = 8668.230524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.105 4.105 4 C -0.061 4.061 5 C 0.194 3.806 6 C -0.300 4.300 7 C 0.428 3.572 8 N -0.580 5.580 9 C 0.274 3.726 10 C -0.502 4.502 11 H 0.037 0.963 12 C 0.020 3.980 13 N -0.924 5.924 14 Si 0.941 3.059 15 H -0.281 1.281 16 H -0.278 1.278 17 H -0.279 1.279 18 C 0.167 3.833 19 C -0.153 4.153 20 C -0.067 4.067 21 C -0.174 4.174 22 C 0.080 3.920 23 N -0.522 5.522 24 C 0.117 3.883 25 N -0.604 5.604 26 C 0.323 3.677 27 N -0.579 5.579 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.163 0.837 38 H 0.013 0.987 39 H 0.019 0.981 40 H 0.264 0.736 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.155 0.845 44 H 0.167 0.833 45 H 0.175 0.825 46 H 0.136 0.864 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 -21.324 0.694 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.143 4.143 4 C -0.099 4.099 5 C 0.051 3.949 6 C -0.328 4.328 7 C 0.186 3.814 8 N -0.288 5.288 9 C 0.153 3.847 10 C -0.541 4.541 11 H 0.055 0.945 12 C -0.179 4.179 13 N -0.564 5.564 14 Si 0.768 3.232 15 H -0.208 1.208 16 H -0.203 1.203 17 H -0.204 1.204 18 C 0.043 3.957 19 C -0.157 4.157 20 C -0.093 4.093 21 C -0.193 4.193 22 C -0.077 4.077 23 N -0.232 5.232 24 C -0.040 4.040 25 N -0.328 5.328 26 C 0.033 3.967 27 N -0.300 5.300 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.180 0.820 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.172 0.828 44 H 0.185 0.815 45 H 0.192 0.808 46 H 0.154 0.846 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.024 -19.992 0.407 21.194 hybrid contribution 0.627 0.497 -0.280 0.847 sum -6.397 -19.495 0.127 20.518 Atomic orbital electron populations 1.21782 0.95918 1.01940 1.01542 1.21510 0.95891 0.95471 1.02785 1.21436 0.93411 0.97702 1.01756 1.20658 0.96574 0.87972 1.04690 1.21833 0.88698 0.96883 0.87475 1.22138 1.08344 0.95879 1.06454 1.18929 0.86473 0.89466 0.86577 1.46992 1.43204 1.09716 1.28935 1.18777 0.94359 0.76036 0.95555 1.21386 1.11617 0.92683 1.28399 0.94453 1.25474 0.99505 0.95976 0.96976 1.69998 1.41972 0.99975 1.44491 0.85812 0.80468 0.77569 0.79340 1.20757 1.20275 1.20434 1.20490 0.91314 0.93593 0.90254 1.21308 0.96682 0.96547 1.01154 1.21820 0.99706 0.94195 0.93588 1.22423 0.92692 1.02633 1.01553 1.23251 1.00029 0.90456 0.93995 1.67641 1.31045 1.13100 1.11370 1.22566 0.88019 0.97394 0.96046 1.68104 1.17884 1.40362 1.06478 1.24929 0.87416 0.90714 0.93605 1.68229 1.29485 1.04441 1.27864 0.93089 0.93258 0.91853 0.91363 0.90881 0.93099 0.92464 0.88972 0.87826 0.81973 0.96868 0.96294 0.92736 0.86776 0.88838 0.82763 0.81520 0.80822 0.84625 0.78281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.12 -1.53 5.93 30.60 0.18 -1.35 16 3 C -0.10 -1.84 5.08 30.60 0.16 -1.69 16 4 C -0.06 -1.09 5.65 29.85 0.17 -0.92 16 5 C 0.19 5.25 6.20 42.42 0.26 5.51 16 6 C -0.30 -8.62 8.26 22.57 0.19 -8.43 16 7 C 0.43 16.45 7.38 133.16 0.98 17.43 16 8 N -0.58 -23.04 2.54 -712.03 -1.81 -24.85 16 9 C 0.27 13.79 5.20 85.63 0.45 14.23 16 10 C -0.50 -27.69 8.83 25.60 0.23 -27.46 16 11 H 0.04 2.16 7.58 -2.91 -0.02 2.14 16 12 C 0.02 1.11 5.46 84.66 0.46 1.58 16 13 N -0.92 -54.68 13.29 21.45 0.28 -54.40 16 14 Si 0.94 46.50 29.54 68.60 2.03 48.52 16 15 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 16 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 17 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 18 C 0.17 5.00 5.47 85.63 0.47 5.47 16 19 C -0.15 -4.80 5.48 -19.77 -0.11 -4.91 16 20 C -0.07 -1.71 9.69 22.47 0.22 -1.49 16 21 C -0.17 -4.10 10.11 22.36 0.23 -3.87 16 22 C 0.08 2.25 11.18 84.69 0.95 3.20 16 23 N -0.52 -19.04 10.36 -195.84 -2.03 -21.07 16 24 C 0.12 4.29 10.07 84.67 0.85 5.15 16 25 N -0.60 -25.83 9.31 -197.62 -1.84 -27.67 16 26 C 0.32 11.55 12.28 180.90 2.22 13.77 16 27 N -0.58 -18.40 10.03 -188.33 -1.89 -20.29 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.22 7.98 -2.39 -0.02 1.20 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.29 7.93 -2.39 -0.02 1.28 16 37 H 0.16 3.45 4.99 -2.91 -0.01 3.44 16 38 H 0.01 0.76 7.48 -2.38 -0.02 0.74 16 39 H 0.02 0.99 7.89 -2.39 -0.02 0.97 16 40 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.11 2.52 6.00 -2.39 -0.01 2.50 16 42 H 0.09 2.72 7.85 -2.38 -0.02 2.70 16 43 H 0.15 3.03 6.35 -2.91 -0.02 3.02 16 44 H 0.17 2.59 8.06 -2.91 -0.02 2.56 16 45 H 0.17 3.75 8.06 -2.91 -0.02 3.72 16 46 H 0.14 5.39 8.06 -2.91 -0.02 5.37 16 47 H 0.20 6.07 8.06 -2.91 -0.02 6.04 16 Total: -1.00 -72.23 390.18 4.31 -67.92 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.96 Total: 16.89 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 8.61 Total: 14.95 kcal Atomic # 7 Polarization: -140.99 SS G_CDS: -7.28 Total: -148.28 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -72.23 4.31 -67.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.227 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds