Wall clock time and date at job start Tue Mar 31 2020 15:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47322 * 2 1 4 4 C 1.38602 * 120.40220 * 124.99647 * 3 2 1 5 5 C 1.38599 * 118.56040 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.40336 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46941 * 125.02489 * 6 5 4 8 8 N 1.32278 * 119.19617 * 0.02562 * 5 4 3 9 9 C 1.32490 * 120.74003 * 359.97438 * 8 5 4 10 10 N 1.38407 * 119.21756 * 180.02562 * 9 8 5 11 11 C 1.46504 * 119.99969 * 359.97438 * 10 9 8 12 12 C 1.50701 * 109.47173 * 270.00113 * 11 10 9 13 13 H 1.07999 * 119.99726 * 359.97438 * 12 11 10 14 14 C 1.37866 * 120.00214 * 179.97438 * 12 11 10 15 15 N 1.31524 * 120.00109 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00289 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47247 * 90.00026 * 16 14 12 18 18 H 1.48503 * 109.47336 * 209.99972 * 16 14 12 19 19 H 1.48500 * 109.47156 * 329.99651 * 16 14 12 20 20 C 1.46500 * 120.00166 * 179.97438 * 10 9 8 21 21 C 1.50700 * 109.47380 * 270.00305 * 20 10 9 22 22 C 1.38677 * 120.41537 * 270.26287 * 21 20 10 23 23 C 1.38625 * 118.42126 * 180.22222 * 22 21 20 24 24 C 1.38223 * 119.15978 * 359.46985 * 23 22 21 25 25 N 1.31856 * 120.76567 * 0.30777 * 24 23 22 26 26 C 1.31884 * 121.72562 * 359.97275 * 25 24 23 27 27 N 1.32277 * 120.40296 * 305.29824 * 3 2 1 28 28 H 1.08996 * 109.47342 * 299.99754 * 1 2 3 29 29 H 1.09000 * 109.47578 * 60.00077 * 1 2 3 30 30 H 1.09002 * 109.47350 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47418 * 239.99988 * 2 1 3 32 32 H 1.09008 * 109.47277 * 119.99988 * 2 1 3 33 33 H 1.08000 * 120.72310 * 0.02562 * 4 3 2 34 34 H 1.08997 * 109.47524 * 245.02449 * 6 5 4 35 35 H 1.08997 * 109.47174 * 5.02800 * 6 5 4 36 36 H 1.09007 * 109.46960 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.47298 * 299.99851 * 7 6 5 38 38 H 1.08997 * 109.46932 * 60.00163 * 7 6 5 39 39 H 1.09001 * 109.47175 * 30.00240 * 11 10 9 40 40 H 1.08999 * 109.47090 * 150.00083 * 11 10 9 41 41 H 0.96992 * 120.00284 * 179.97438 * 15 14 12 42 42 H 1.08993 * 109.47314 * 149.99550 * 20 10 9 43 43 H 1.09007 * 109.46809 * 29.99689 * 20 10 9 44 44 H 1.08003 * 120.78603 * 359.97006 * 22 21 20 45 45 H 1.08002 * 120.42343 * 179.75479 * 23 22 21 46 46 H 1.08005 * 119.61951 * 180.28273 * 24 23 22 47 47 H 1.07998 * 119.61861 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9125 1.8536 0.9793 5 6 3.3498 3.1683 0.9431 6 6 4.3066 3.6828 1.9876 7 6 5.5375 4.2794 1.3020 8 7 2.9164 3.9662 -0.0187 9 6 2.0748 3.5211 -0.9401 10 7 1.6419 4.3831 -1.9326 11 6 2.1138 5.7699 -1.9555 12 6 1.1779 6.6323 -1.1484 13 1 0.3174 6.1916 -0.6670 14 6 1.4201 7.9839 -1.0246 15 7 2.4677 8.5207 -1.6113 16 14 0.2605 9.0528 -0.0236 17 1 0.7194 9.0938 1.3880 18 1 0.2507 10.4292 -0.5810 19 1 -1.1105 8.4854 -0.0822 20 6 0.7118 3.9088 -2.9604 21 6 1.4905 3.3592 -4.1276 22 6 1.8644 4.1879 -5.1748 23 6 2.5758 3.6378 -6.2298 24 6 2.8961 2.2936 -6.1979 25 7 2.5279 1.5364 -5.1833 26 6 1.8456 2.0243 -4.1655 27 7 1.6340 2.2717 -0.9311 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2504 1.1809 1.7538 34 1 3.8147 4.4512 2.5839 35 1 4.6137 2.8615 2.6350 36 1 6.2297 4.6511 2.0575 37 1 6.0294 3.5110 0.7057 38 1 5.2303 5.1006 0.6545 39 1 3.1148 5.8202 -1.5270 40 1 2.1408 6.1275 -2.9848 41 1 2.6380 9.4716 -1.5245 42 1 0.0889 4.7375 -3.2969 43 1 0.0793 3.1247 -2.5440 44 1 1.6040 5.2361 -5.1704 45 1 2.8800 4.2528 -7.0639 46 1 3.4541 1.8583 -7.0138 47 1 1.5619 1.3733 -3.3519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164010939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:48 Heat of formation + Delta-G solvation = 78.231227 kcal Electronic energy + Delta-G solvation = -28076.735054 eV Core-core repulsion = 24452.304445 eV Total energy + Delta-G solvation = -3624.430608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.53486 -39.81549 -36.58140 -35.22236 -33.41810 -32.94021 -31.96887 -31.28981 -30.74489 -29.61438 -27.50074 -25.71328 -25.01700 -23.50624 -23.23398 -22.85679 -22.12354 -20.26049 -20.19106 -17.06215 -16.83708 -16.68322 -16.27984 -15.82021 -15.12783 -14.92777 -14.82668 -14.57878 -14.29202 -14.06422 -13.74195 -13.68119 -13.48745 -13.16247 -13.00437 -12.77517 -12.49466 -12.39582 -11.86450 -11.74057 -11.49375 -11.37503 -11.25839 -11.15072 -11.11528 -10.88375 -10.82402 -10.63027 -10.28646 -10.12363 -9.92336 -9.65852 -9.54535 -9.25617 -9.10379 -8.79161 -8.48947 -8.27889 -7.07730 -6.06048 -4.11797 1.32163 1.53888 1.76841 1.84366 3.27534 3.33920 3.36145 3.54123 4.12405 4.39180 4.48265 4.55946 4.68681 4.71035 5.04720 5.11283 5.20014 5.25610 5.27208 5.30167 5.32993 5.38399 5.42441 5.56037 5.59539 5.66251 5.70948 5.77513 5.89117 5.91631 5.96238 6.06267 6.09085 6.12360 6.18198 6.25636 6.35361 6.36465 6.39920 6.58231 6.63991 6.82129 6.95790 7.07570 7.40985 7.64551 7.80138 7.90818 8.19281 8.20450 8.33845 8.88171 9.10775 9.52886 10.99941 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007404 B = 0.005760 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3780.771149 B = 4860.212749 C = 6954.965011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C 0.214 3.786 4 C -0.312 4.312 5 C 0.219 3.781 6 C -0.071 4.071 7 C -0.142 4.142 8 N -0.543 5.543 9 C 0.580 3.420 10 N -0.558 5.558 11 C 0.260 3.740 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.064 3.936 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.175 3.825 21 C -0.145 4.145 22 C -0.059 4.059 23 C -0.179 4.179 24 C 0.088 3.912 25 N -0.494 5.494 26 C 0.117 3.883 27 N -0.583 5.583 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.030 0.970 41 H 0.263 0.737 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.137 0.863 45 H 0.131 0.869 46 H 0.149 0.851 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.643 -13.809 -0.616 13.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C 0.066 3.934 4 C -0.339 4.339 5 C 0.068 3.932 6 C -0.109 4.109 7 C -0.200 4.200 8 N -0.265 5.265 9 C 0.225 3.775 10 N -0.269 5.269 11 C 0.141 3.859 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.200 1.200 20 C 0.050 3.950 21 C -0.148 4.148 22 C -0.085 4.085 23 C -0.198 4.198 24 C -0.069 4.069 25 N -0.203 5.203 26 C -0.040 4.040 27 N -0.308 5.308 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.146 0.854 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.166 0.834 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.559 -13.677 -1.551 13.776 hybrid contribution -0.431 1.197 1.216 1.760 sum 0.128 -12.479 -0.334 12.484 Atomic orbital electron populations 1.21632 0.94131 1.01256 1.02818 1.20457 0.96925 0.90538 1.02870 1.21156 0.89330 0.94852 0.88092 1.21970 1.08496 0.98325 1.05142 1.21345 0.91029 0.89123 0.91653 1.20466 0.94603 1.00838 0.94956 1.21642 0.96068 1.01625 1.00644 1.67853 1.15872 1.37593 1.05138 1.19273 0.86328 0.84951 0.86965 1.46791 1.45982 1.11049 1.23123 1.19332 0.96463 0.72951 0.97132 1.21410 1.10293 0.92578 1.31735 0.92643 1.24874 0.95448 0.97753 0.95712 1.69929 1.27175 1.12441 1.43764 0.86555 0.81151 0.79602 0.80441 1.20642 1.21186 1.20025 1.20133 0.90094 0.99759 0.84997 1.21516 1.00963 0.95188 0.97176 1.21659 0.94244 1.00286 0.92321 1.22092 1.00930 0.96831 0.99987 1.22674 0.97087 0.90938 0.96245 1.67700 1.11313 1.39551 1.01715 1.22831 0.92652 0.93363 0.95140 1.67589 1.30943 1.03448 1.28835 0.93016 0.91479 0.92654 0.90001 0.90502 0.85353 0.89734 0.90685 0.92676 0.93352 0.90795 0.93272 0.95235 0.92772 0.89282 0.89379 0.84559 0.85141 0.83388 0.82387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.78 37.15 0.36 -1.18 16 2 C -0.07 -0.80 6.36 -27.89 -0.18 -0.98 16 3 C 0.21 3.36 6.21 -82.27 -0.51 2.85 16 4 C -0.31 -4.82 9.42 -39.31 -0.37 -5.20 16 5 C 0.22 3.89 6.20 -82.27 -0.51 3.38 16 6 C -0.07 -1.02 6.36 -27.88 -0.18 -1.20 16 7 C -0.14 -2.08 9.78 37.16 0.36 -1.71 16 8 N -0.54 -11.72 8.71 -10.16 -0.09 -11.81 16 9 C 0.58 12.25 8.17 -322.82 -2.64 9.61 16 10 N -0.56 -11.98 2.54 -178.78 -0.45 -12.43 16 11 C 0.26 6.53 5.16 -5.19 -0.03 6.50 16 12 C -0.52 -14.18 9.39 -34.44 -0.32 -14.50 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.18 3.13 5.56 -5.19 -0.03 3.10 16 21 C -0.14 -2.42 5.48 -104.48 -0.57 -2.99 16 22 C -0.06 -0.91 9.86 -39.28 -0.39 -1.30 16 23 C -0.18 -2.43 10.11 -39.44 -0.40 -2.83 16 24 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 25 N -0.49 -8.02 10.36 -13.25 -0.14 -8.16 16 26 C 0.12 1.93 10.86 -17.55 -0.19 1.74 16 27 N -0.58 -10.59 8.00 -10.16 -0.08 -10.67 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.83 7.98 -51.93 -0.41 0.41 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.72 7.94 -51.92 -0.41 0.31 16 33 H 0.13 1.57 7.95 -52.49 -0.42 1.15 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 0.84 7.94 -51.93 -0.41 0.43 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.32 7.98 -51.93 -0.41 0.91 16 39 H 0.05 1.37 7.33 -51.93 -0.38 0.99 16 40 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.09 1.57 8.03 -51.93 -0.42 1.15 16 43 H 0.09 1.49 7.28 -51.93 -0.38 1.11 16 44 H 0.14 2.08 8.06 -52.48 -0.42 1.66 16 45 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 46 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 47 H 0.16 2.56 7.34 -52.49 -0.39 2.18 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -31.19 396.10 -12.36 -43.55 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.40 Total: 4.01 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -5.88 Total: -2.01 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -0.02 Total: -67.89 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.19 -12.36 -43.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.777 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds