Wall clock time and date at job start Tue Mar 31 2020 15:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50702 * 109.47322 * 2 1 4 4 C 1.38602 * 120.40220 * 124.99647 * 3 2 1 5 5 C 1.38599 * 118.56040 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.40336 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46941 * 125.02489 * 6 5 4 8 8 N 1.32278 * 119.19617 * 0.02562 * 5 4 3 9 9 C 1.32490 * 120.74003 * 359.97438 * 8 5 4 10 10 N 1.38407 * 119.21756 * 180.02562 * 9 8 5 11 11 C 1.46504 * 119.99969 * 359.97438 * 10 9 8 12 12 C 1.50701 * 109.47173 * 270.00113 * 11 10 9 13 13 H 1.07999 * 119.99726 * 359.97438 * 12 11 10 14 14 C 1.37866 * 120.00214 * 179.97438 * 12 11 10 15 15 N 1.31524 * 120.00109 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00289 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47247 * 90.00026 * 16 14 12 18 18 H 1.48503 * 109.47336 * 209.99972 * 16 14 12 19 19 H 1.48500 * 109.47156 * 329.99651 * 16 14 12 20 20 C 1.46500 * 120.00166 * 179.97438 * 10 9 8 21 21 C 1.50700 * 109.47380 * 270.00305 * 20 10 9 22 22 C 1.38677 * 120.41537 * 270.26287 * 21 20 10 23 23 C 1.38625 * 118.42126 * 180.22222 * 22 21 20 24 24 C 1.38223 * 119.15978 * 359.46985 * 23 22 21 25 25 N 1.31856 * 120.76567 * 0.30777 * 24 23 22 26 26 C 1.31884 * 121.72562 * 359.97275 * 25 24 23 27 27 N 1.32277 * 120.40296 * 305.29824 * 3 2 1 28 28 H 1.08996 * 109.47342 * 299.99754 * 1 2 3 29 29 H 1.09000 * 109.47578 * 60.00077 * 1 2 3 30 30 H 1.09002 * 109.47350 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47418 * 239.99988 * 2 1 3 32 32 H 1.09008 * 109.47277 * 119.99988 * 2 1 3 33 33 H 1.08000 * 120.72310 * 0.02562 * 4 3 2 34 34 H 1.08997 * 109.47524 * 245.02449 * 6 5 4 35 35 H 1.08997 * 109.47174 * 5.02800 * 6 5 4 36 36 H 1.09007 * 109.46960 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.47298 * 299.99851 * 7 6 5 38 38 H 1.08997 * 109.46932 * 60.00163 * 7 6 5 39 39 H 1.09001 * 109.47175 * 30.00240 * 11 10 9 40 40 H 1.08999 * 109.47090 * 150.00083 * 11 10 9 41 41 H 0.96992 * 120.00284 * 179.97438 * 15 14 12 42 42 H 1.08993 * 109.47314 * 149.99550 * 20 10 9 43 43 H 1.09007 * 109.46809 * 29.99689 * 20 10 9 44 44 H 1.08003 * 120.78603 * 359.97006 * 22 21 20 45 45 H 1.08002 * 120.42343 * 179.75479 * 23 22 21 46 46 H 1.08005 * 119.61951 * 180.28273 * 24 23 22 47 47 H 1.07998 * 119.61861 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9125 1.8536 0.9793 5 6 3.3498 3.1683 0.9431 6 6 4.3066 3.6828 1.9876 7 6 5.5375 4.2794 1.3020 8 7 2.9164 3.9662 -0.0187 9 6 2.0748 3.5211 -0.9401 10 7 1.6419 4.3831 -1.9326 11 6 2.1138 5.7699 -1.9555 12 6 1.1779 6.6323 -1.1484 13 1 0.3174 6.1916 -0.6670 14 6 1.4201 7.9839 -1.0246 15 7 2.4677 8.5207 -1.6113 16 14 0.2605 9.0528 -0.0236 17 1 0.7194 9.0938 1.3880 18 1 0.2507 10.4292 -0.5810 19 1 -1.1105 8.4854 -0.0822 20 6 0.7118 3.9088 -2.9604 21 6 1.4905 3.3592 -4.1276 22 6 1.8644 4.1879 -5.1748 23 6 2.5758 3.6378 -6.2298 24 6 2.8961 2.2936 -6.1979 25 7 2.5279 1.5364 -5.1833 26 6 1.8456 2.0243 -4.1655 27 7 1.6340 2.2717 -0.9311 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2504 1.1809 1.7538 34 1 3.8147 4.4512 2.5839 35 1 4.6137 2.8615 2.6350 36 1 6.2297 4.6511 2.0575 37 1 6.0294 3.5110 0.7057 38 1 5.2303 5.1006 0.6545 39 1 3.1148 5.8202 -1.5270 40 1 2.1408 6.1275 -2.9848 41 1 2.6380 9.4716 -1.5245 42 1 0.0889 4.7375 -3.2969 43 1 0.0793 3.1247 -2.5440 44 1 1.6040 5.2361 -5.1704 45 1 2.8800 4.2528 -7.0639 46 1 3.4541 1.8583 -7.0138 47 1 1.5619 1.3733 -3.3519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164010939.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:47 Heat of formation + Delta-G solvation = 64.241016 kcal Electronic energy + Delta-G solvation = -28077.341715 eV Core-core repulsion = 24452.304445 eV Total energy + Delta-G solvation = -3625.037269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90708 -41.03301 -38.09906 -36.42669 -34.98490 -34.57293 -33.28028 -32.59387 -32.01890 -30.93281 -29.27683 -27.21377 -26.22139 -25.18093 -24.42749 -24.13838 -23.42272 -21.74463 -21.41085 -18.69764 -18.33806 -18.13926 -17.78692 -17.07825 -16.63053 -16.49407 -16.20947 -15.87605 -15.52337 -15.40013 -14.95027 -14.84638 -14.78093 -14.53411 -14.29282 -14.22192 -13.97514 -13.53194 -13.35240 -13.19474 -13.03910 -12.84887 -12.61395 -12.55041 -12.42604 -12.25716 -12.15422 -12.12069 -11.99348 -11.74774 -11.51469 -11.01871 -10.77594 -10.75905 -10.61724 -10.40558 -10.00015 -9.70039 -8.68874 -8.13267 -6.32022 0.12246 0.31875 0.43014 0.49448 1.35670 1.36908 1.46845 2.05167 2.39152 2.90367 3.09031 3.10552 3.33454 3.51733 3.55416 3.79440 3.91981 3.93729 4.07826 4.11519 4.27824 4.29268 4.37070 4.40838 4.46926 4.52090 4.53938 4.68212 4.74633 4.76734 4.78627 4.87943 4.93826 4.98238 5.07372 5.12375 5.14444 5.18413 5.24177 5.27515 5.36555 5.41443 5.47030 5.62772 5.73258 5.78372 6.06074 6.16924 6.27899 6.71964 6.84842 7.00076 7.35214 7.65767 8.87072 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.007404 B = 0.005760 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3780.771149 B = 4860.212749 C = 6954.965011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C 0.201 3.799 4 C -0.299 4.299 5 C 0.194 3.806 6 C -0.068 4.068 7 C -0.135 4.135 8 N -0.591 5.591 9 C 0.557 3.443 10 N -0.572 5.572 11 C 0.287 3.713 12 C -0.530 4.530 13 H 0.042 0.958 14 C 0.018 3.982 15 N -0.923 5.923 16 Si 0.958 3.042 17 H -0.279 1.279 18 H -0.276 1.276 19 H -0.270 1.270 20 C 0.182 3.818 21 C -0.157 4.157 22 C -0.074 4.074 23 C -0.170 4.170 24 C 0.088 3.912 25 N -0.510 5.510 26 C 0.111 3.889 27 N -0.582 5.582 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.171 0.829 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.028 0.972 39 H 0.012 0.988 40 H 0.015 0.985 41 H 0.266 0.734 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.132 0.868 45 H 0.164 0.836 46 H 0.186 0.814 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.801 -16.000 0.082 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C 0.053 3.947 4 C -0.325 4.325 5 C 0.046 3.954 6 C -0.106 4.106 7 C -0.193 4.193 8 N -0.314 5.314 9 C 0.202 3.798 10 N -0.285 5.285 11 C 0.166 3.834 12 C -0.569 4.569 13 H 0.061 0.939 14 C -0.182 4.182 15 N -0.563 5.563 16 Si 0.783 3.217 17 H -0.205 1.205 18 H -0.201 1.201 19 H -0.195 1.195 20 C 0.058 3.942 21 C -0.161 4.161 22 C -0.101 4.101 23 C -0.190 4.190 24 C -0.069 4.069 25 N -0.219 5.219 26 C -0.045 4.045 27 N -0.306 5.306 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.189 0.811 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.111 0.889 44 H 0.150 0.850 45 H 0.181 0.819 46 H 0.203 0.797 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.717 -15.919 -0.822 15.956 hybrid contribution -0.409 1.761 1.005 2.068 sum 0.308 -14.158 0.183 14.163 Atomic orbital electron populations 1.21601 0.93851 1.02606 1.01420 1.20603 0.97020 0.87745 1.04816 1.22045 0.88964 0.96358 0.87310 1.22436 1.06878 0.97760 1.05379 1.22012 0.91647 0.90167 0.91536 1.20599 0.93509 1.02053 0.94399 1.21564 0.96867 1.00194 1.00701 1.67817 1.17151 1.39775 1.06650 1.19448 0.87186 0.85994 0.87181 1.46570 1.47250 1.09992 1.24677 1.18663 0.94244 0.75164 0.95306 1.21573 1.10128 0.93275 1.31897 0.93931 1.25648 0.96908 0.98958 0.96653 1.70035 1.28603 1.12844 1.44860 0.85567 0.79226 0.78150 0.78747 1.20537 1.20065 1.19482 1.20109 0.89751 0.99440 0.84907 1.21386 1.01882 0.95647 0.97137 1.21802 0.95035 1.00173 0.93054 1.22434 0.99381 0.97202 0.99954 1.23314 0.96254 0.91004 0.96289 1.67731 1.11691 1.40253 1.02248 1.22747 0.93167 0.93100 0.95521 1.67659 1.30812 1.02482 1.29689 0.93817 0.93499 0.89902 0.89158 0.87279 0.81148 0.90549 0.86397 0.89954 0.93072 0.95302 0.97041 0.96692 0.92530 0.90046 0.88876 0.85018 0.81872 0.79701 0.82695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.78 71.98 0.70 -2.02 16 2 C -0.06 -1.28 6.36 29.85 0.19 -1.09 16 3 C 0.20 6.02 6.21 42.58 0.26 6.29 16 4 C -0.30 -8.58 9.42 22.44 0.21 -8.36 16 5 C 0.19 6.87 6.20 42.58 0.26 7.14 16 6 C -0.07 -1.89 6.36 29.85 0.19 -1.70 16 7 C -0.14 -3.98 9.78 71.98 0.70 -3.27 16 8 N -0.59 -26.69 8.71 -186.05 -1.62 -28.31 16 9 C 0.56 24.61 8.17 261.49 2.14 26.75 16 10 N -0.57 -26.12 2.54 -719.55 -1.83 -27.94 16 11 C 0.29 15.43 5.16 85.63 0.44 15.87 16 12 C -0.53 -30.26 9.39 25.60 0.24 -30.02 16 13 H 0.04 2.49 7.81 -2.91 -0.02 2.46 16 14 C 0.02 1.00 5.46 84.65 0.46 1.46 16 15 N -0.92 -54.63 13.29 21.44 0.28 -54.34 16 16 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 C 0.18 6.92 5.56 85.63 0.48 7.39 16 21 C -0.16 -5.44 5.48 -19.77 -0.11 -5.55 16 22 C -0.07 -2.36 9.86 22.47 0.22 -2.14 16 23 C -0.17 -4.41 10.11 22.36 0.23 -4.19 16 24 C 0.09 2.30 11.18 84.69 0.95 3.24 16 25 N -0.51 -16.15 10.36 -195.84 -2.03 -18.18 16 26 C 0.11 3.72 10.86 84.67 0.92 4.64 16 27 N -0.58 -21.42 8.00 -186.04 -1.49 -22.91 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 1.12 7.98 -2.39 -0.02 1.10 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.11 1.52 7.94 -2.38 -0.02 1.50 16 33 H 0.17 3.35 7.95 -2.91 -0.02 3.33 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.12 2.24 7.94 -2.39 -0.02 2.22 16 36 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.03 1.08 7.98 -2.39 -0.02 1.06 16 39 H 0.01 0.70 7.33 -2.39 -0.02 0.68 16 40 H 0.02 0.83 8.07 -2.39 -0.02 0.82 16 41 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.08 3.10 8.03 -2.39 -0.02 3.09 16 43 H 0.09 3.34 7.28 -2.38 -0.02 3.33 16 44 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 45 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 46 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 47 H 0.16 5.14 7.34 -2.91 -0.02 5.11 16 Total: -1.00 -72.08 396.10 4.79 -67.30 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.95 Total: 23.14 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 8.49 Total: 14.43 kcal Atomic # 7 Polarization: -145.01 SS G_CDS: -6.68 Total: -151.69 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.08 4.79 -67.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164010939.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.539 kcal (2) G-P(sol) polarization free energy of solvation -72.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds