Wall clock time and date at job start Tue Mar 31 2020 14:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50699 * 112.84830 * 116.27853 * 3 2 1 5 5 C 1.38887 * 120.33283 * 309.38458 * 4 3 2 6 6 C 1.38302 * 118.50277 * 179.73348 * 5 4 3 7 7 C 1.39129 * 119.09513 * 0.54280 * 6 5 4 8 8 N 1.39002 * 119.70395 * 179.69793 * 7 6 5 9 9 C 1.46959 * 111.00065 * 303.82167 * 8 7 6 10 10 C 1.53056 * 109.36296 * 176.80761 * 9 8 7 11 11 N 1.46967 * 109.36255 * 58.40319 * 10 9 8 12 12 C 1.46899 * 110.99774 * 176.80721 * 11 10 9 13 13 C 1.50701 * 109.46957 * 58.99531 * 12 11 10 14 14 H 1.07999 * 120.00240 * 4.98394 * 13 12 11 15 15 C 1.37877 * 119.99898 * 184.98802 * 13 12 11 16 16 N 1.31510 * 119.99976 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99807 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47179 * 90.00274 * 17 15 13 19 19 H 1.48503 * 109.47360 * 210.00018 * 17 15 13 20 20 H 1.48496 * 109.47428 * 330.00448 * 17 15 13 21 21 C 1.46952 * 110.87769 * 300.68064 * 11 10 9 22 22 C 1.46959 * 111.00117 * 180.02562 * 8 7 6 23 23 N 1.32396 * 120.59547 * 359.72350 * 7 6 5 24 24 C 1.31976 * 121.61590 * 359.97438 * 23 7 6 25 25 C 1.53781 * 113.61521 * 345.07711 * 3 2 1 26 26 C 1.54052 * 86.98736 * 270.83921 * 25 3 2 27 27 C 1.53781 * 87.07667 * 334.57237 * 26 25 3 28 28 H 1.08006 * 120.74862 * 359.97438 * 5 4 3 29 29 H 1.08003 * 120.44520 * 180.24022 * 6 5 4 30 30 H 1.08998 * 109.48935 * 296.77590 * 9 8 7 31 31 H 1.08996 * 109.48422 * 56.84515 * 9 8 7 32 32 H 1.08995 * 109.49509 * 298.43764 * 10 9 8 33 33 H 1.08999 * 109.48574 * 178.36324 * 10 9 8 34 34 H 1.09007 * 109.46889 * 178.99094 * 12 11 10 35 35 H 1.08998 * 109.47218 * 298.98946 * 12 11 10 36 36 H 0.96998 * 120.00023 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.48957 * 299.34610 * 21 11 10 38 38 H 1.09004 * 109.48333 * 179.29196 * 21 11 10 39 39 H 1.09008 * 109.48564 * 303.15693 * 22 8 7 40 40 H 1.08992 * 109.49364 * 63.19788 * 22 8 7 41 41 H 1.08001 * 119.57239 * 179.97438 * 24 23 7 42 42 H 1.09000 * 113.61399 * 25.43461 * 25 3 2 43 43 H 1.08999 * 113.61022 * 156.33754 * 25 3 2 44 44 H 1.08999 * 113.61972 * 220.02313 * 26 25 3 45 45 H 1.08999 * 113.68563 * 89.12369 * 26 25 3 46 46 H 1.09003 * 113.61260 * 270.88190 * 27 26 25 47 47 H 1.08998 * 113.61737 * 139.97522 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1930 0.6158 -1.2452 5 6 2.7645 0.2017 -2.4998 6 6 3.3228 0.7957 -3.6171 7 6 4.2973 1.7741 -3.4474 8 7 4.8714 2.3749 -4.5617 9 6 5.4620 1.3698 -5.4565 10 6 6.0114 2.0627 -6.7057 11 7 7.0124 3.0625 -6.3079 12 6 7.6191 3.6974 -7.4855 13 6 6.5446 4.3607 -8.3080 14 1 5.5267 4.3849 -7.9481 15 6 6.8611 4.9366 -9.5201 16 7 5.9234 5.5150 -10.2381 17 14 8.6220 4.8952 -10.1423 18 1 8.8322 3.6682 -10.9520 19 1 8.8784 6.0926 -10.9825 20 1 9.5552 4.8919 -8.9873 21 6 6.4219 4.0675 -5.4131 22 6 5.8725 3.3746 -4.1639 23 7 4.6831 2.1377 -2.2343 24 6 4.1636 1.5924 -1.1506 25 6 3.2247 -1.3606 0.3629 26 6 3.1714 -0.9015 1.8324 27 6 3.2238 0.5408 1.3016 28 1 2.0096 -0.5640 -2.6006 29 1 3.0100 0.5005 -4.6078 30 1 6.2721 0.8546 -4.9403 31 1 4.6984 0.6483 -5.7470 32 1 5.1967 2.5551 -7.2365 33 1 6.4758 1.3226 -7.3574 34 1 8.3431 4.4455 -7.1623 35 1 8.1225 2.9408 -8.0873 36 1 6.1461 5.9204 -11.0907 37 1 5.6118 4.5828 -5.9292 38 1 7.1855 4.7892 -5.1226 39 1 5.4081 4.1147 -3.5121 40 1 6.6870 2.8823 -3.6328 41 1 4.5031 1.9137 -0.1770 42 1 2.5736 -2.2070 0.1444 43 1 4.2378 -1.4958 -0.0158 44 1 4.0503 -1.1860 2.4110 45 1 2.2360 -1.1482 2.3346 46 1 4.2366 0.9245 1.1790 47 1 2.5719 1.2284 1.8404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:00 Heat of formation + Delta-G solvation = 115.039058 kcal Electronic energy + Delta-G solvation = -26997.120537 eV Core-core repulsion = 23374.286037 eV Total energy + Delta-G solvation = -3622.834501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27262 -39.87841 -38.18923 -36.17470 -35.29123 -32.79564 -32.42593 -30.91836 -30.44459 -28.39851 -26.68449 -26.30435 -24.93339 -24.11466 -22.60627 -22.20075 -21.33886 -21.18643 -19.24848 -17.80497 -17.40938 -16.84533 -16.49105 -16.37667 -15.34015 -15.14502 -14.68936 -14.47781 -14.38694 -14.34383 -14.19770 -13.93518 -13.57774 -13.33428 -13.17875 -13.04394 -13.00275 -12.75329 -12.47670 -12.35402 -12.15951 -12.08293 -11.37626 -11.32821 -11.14474 -11.04600 -10.88693 -10.78824 -10.64449 -10.38758 -10.20914 -10.05759 -9.96508 -9.73469 -9.52602 -9.45609 -8.61972 -8.00514 -7.28392 -6.12622 -4.13028 0.92500 1.15187 2.29253 2.37326 3.25427 3.30416 3.33714 3.37115 3.50428 3.77713 3.92814 4.09306 4.21414 4.28439 4.37172 4.42032 4.66964 4.83365 4.86805 4.99674 5.06792 5.16148 5.19242 5.20241 5.30621 5.39310 5.41163 5.45239 5.48594 5.53808 5.66320 5.72422 5.74171 5.85742 5.92841 5.94735 6.05105 6.19617 6.30529 6.49641 6.66022 6.78029 6.80924 6.96303 7.02675 7.16799 7.26038 7.51428 7.93326 7.97176 8.00508 8.41566 8.90434 9.49745 11.00167 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.032960 B = 0.002266 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.303847 B =12354.075500 C =12618.623418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.233 3.767 3 C 0.057 3.943 4 C -0.171 4.171 5 C -0.040 4.040 6 C -0.186 4.186 7 C 0.330 3.670 8 N -0.475 5.475 9 C 0.066 3.934 10 C 0.060 3.940 11 N -0.537 5.537 12 C 0.155 3.845 13 C -0.552 4.552 14 H 0.077 0.923 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.879 3.121 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.056 3.944 22 C 0.073 3.927 23 N -0.516 5.516 24 C 0.142 3.858 25 C -0.114 4.114 26 C -0.144 4.144 27 C -0.123 4.123 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.029 0.971 35 H 0.026 0.974 36 H 0.264 0.736 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.159 0.841 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.108 0.892 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 -14.112 22.691 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.085 4.085 3 C 0.053 3.947 4 C -0.176 4.176 5 C -0.066 4.066 6 C -0.209 4.209 7 C 0.098 3.902 8 N -0.191 5.191 9 C -0.060 4.060 10 C -0.069 4.069 11 N -0.261 5.261 12 C 0.028 3.972 13 C -0.591 4.591 14 H 0.095 0.905 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.073 4.073 22 C -0.053 4.053 23 N -0.230 5.230 24 C -0.016 4.016 25 C -0.152 4.152 26 C -0.181 4.181 27 C -0.161 4.161 28 H 0.148 0.852 29 H 0.157 0.843 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.176 0.824 42 H 0.096 0.904 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.126 0.874 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.534 -13.325 22.486 26.375 hybrid contribution 0.278 -0.336 -0.868 0.971 sum -3.257 -13.661 21.618 25.779 Atomic orbital electron populations 1.81263 1.12269 1.08245 1.08083 1.28216 0.93828 0.93262 0.93224 1.17760 0.81968 1.00155 0.94840 1.19944 1.02423 1.02029 0.93163 1.21203 0.96903 0.97155 0.91339 1.21578 0.99521 0.99552 1.00216 1.20093 0.92268 0.89162 0.88675 1.59177 1.33237 1.14388 1.12284 1.22437 0.97412 0.92412 0.93725 1.22006 0.95641 0.95425 0.93803 1.62654 1.30317 1.14785 1.18311 1.20156 0.95251 0.93993 0.87760 1.21686 0.96540 1.36821 1.04054 0.90542 1.24979 0.97089 0.94489 0.96515 1.69928 1.32913 1.37331 1.13385 0.86795 0.85588 0.77719 0.79269 1.20216 1.21328 1.18887 1.22083 0.98752 0.94183 0.92247 1.22141 0.92240 0.93718 0.97249 1.67782 1.27889 1.29228 0.98114 1.22473 0.91569 0.90642 0.96939 1.23108 1.02097 0.93985 0.96039 1.22964 1.03145 0.95645 0.96341 1.23130 1.02249 0.97878 0.92862 0.85222 0.84327 0.93265 0.90219 0.92189 0.90566 0.95343 0.95582 0.92663 0.92806 0.90737 0.90022 0.92828 0.82385 0.90423 0.87756 0.89982 0.89913 0.87381 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.14 18.54 42.16 0.78 -4.36 16 2 C 0.23 2.19 13.65 -20.76 -0.28 1.91 16 3 C 0.06 0.38 1.10 -157.64 -0.17 0.20 16 4 C -0.17 -1.48 5.01 -104.46 -0.52 -2.01 16 5 C -0.04 -0.39 9.44 -39.32 -0.37 -0.76 16 6 C -0.19 -2.16 9.21 -39.23 -0.36 -2.52 16 7 C 0.33 4.55 6.40 -155.03 -0.99 3.56 16 8 N -0.47 -7.42 4.73 -173.04 -0.82 -8.24 16 9 C 0.07 0.97 5.37 -3.76 -0.02 0.95 16 10 C 0.06 1.10 5.24 -3.76 -0.02 1.08 16 11 N -0.54 -10.78 4.92 -235.90 -1.16 -11.94 16 12 C 0.16 3.61 4.21 -4.98 -0.02 3.59 16 13 C -0.55 -15.01 8.21 -34.44 -0.28 -15.29 16 14 H 0.08 2.28 6.07 -52.49 -0.32 1.96 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 17 Si 0.88 21.04 27.37 -169.99 -4.65 16.39 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.26 -6.08 6.69 56.52 0.38 -5.71 16 21 C 0.06 1.06 5.32 -3.77 -0.02 1.04 16 22 C 0.07 1.18 4.79 -3.77 -0.02 1.16 16 23 N -0.52 -6.70 8.71 -12.44 -0.11 -6.81 16 24 C 0.14 1.36 10.35 -17.57 -0.18 1.18 16 25 C -0.11 -0.53 7.21 -25.78 -0.19 -0.71 16 26 C -0.14 -0.55 7.80 -25.78 -0.20 -0.75 16 27 C -0.12 -0.55 6.64 -25.92 -0.17 -0.72 16 28 H 0.13 1.06 7.94 -52.48 -0.42 0.64 16 29 H 0.14 1.49 7.17 -52.48 -0.38 1.11 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.01 6.78 -51.93 -0.35 0.65 16 32 H 0.06 1.28 6.62 -51.93 -0.34 0.94 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.03 0.67 7.52 -51.93 -0.39 0.28 16 35 H 0.03 0.61 7.30 -51.93 -0.38 0.23 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.05 1.17 6.78 -51.93 -0.35 0.82 16 38 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 39 H 0.08 1.29 7.82 -51.92 -0.41 0.88 16 40 H 0.05 0.86 8.05 -51.93 -0.42 0.44 16 41 H 0.16 1.04 5.79 -52.49 -0.30 0.74 16 42 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 43 H 0.10 0.42 8.09 -51.93 -0.42 0.00 16 44 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.08 0.35 8.13 -51.93 -0.42 -0.07 16 46 H 0.11 0.34 6.02 -51.93 -0.31 0.02 16 47 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 LS Contribution 371.67 15.07 5.60 5.60 Total: -1.00 -32.05 371.67 -10.41 -42.46 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.90 Total: -0.71 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.93 Total: -6.13 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.53 Total: -57.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.65 Total: 16.39 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.05 -10.41 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.503 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds