Wall clock time and date at job start Tue Mar 31 2020 14:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50699 * 112.84830 * 116.27853 * 3 2 1 5 5 C 1.38887 * 120.33283 * 309.38458 * 4 3 2 6 6 C 1.38302 * 118.50277 * 179.73348 * 5 4 3 7 7 C 1.39129 * 119.09513 * 0.54280 * 6 5 4 8 8 N 1.39002 * 119.70395 * 179.69793 * 7 6 5 9 9 C 1.46959 * 111.00065 * 303.82167 * 8 7 6 10 10 C 1.53056 * 109.36296 * 176.80761 * 9 8 7 11 11 N 1.46967 * 109.36255 * 58.40319 * 10 9 8 12 12 C 1.46899 * 110.99774 * 176.80721 * 11 10 9 13 13 C 1.50701 * 109.46957 * 58.99531 * 12 11 10 14 14 H 1.07999 * 120.00240 * 4.98394 * 13 12 11 15 15 C 1.37877 * 119.99898 * 184.98802 * 13 12 11 16 16 N 1.31510 * 119.99976 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99807 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47179 * 90.00274 * 17 15 13 19 19 H 1.48503 * 109.47360 * 210.00018 * 17 15 13 20 20 H 1.48496 * 109.47428 * 330.00448 * 17 15 13 21 21 C 1.46952 * 110.87769 * 300.68064 * 11 10 9 22 22 C 1.46959 * 111.00117 * 180.02562 * 8 7 6 23 23 N 1.32396 * 120.59547 * 359.72350 * 7 6 5 24 24 C 1.31976 * 121.61590 * 359.97438 * 23 7 6 25 25 C 1.53781 * 113.61521 * 345.07711 * 3 2 1 26 26 C 1.54052 * 86.98736 * 270.83921 * 25 3 2 27 27 C 1.53781 * 87.07667 * 334.57237 * 26 25 3 28 28 H 1.08006 * 120.74862 * 359.97438 * 5 4 3 29 29 H 1.08003 * 120.44520 * 180.24022 * 6 5 4 30 30 H 1.08998 * 109.48935 * 296.77590 * 9 8 7 31 31 H 1.08996 * 109.48422 * 56.84515 * 9 8 7 32 32 H 1.08995 * 109.49509 * 298.43764 * 10 9 8 33 33 H 1.08999 * 109.48574 * 178.36324 * 10 9 8 34 34 H 1.09007 * 109.46889 * 178.99094 * 12 11 10 35 35 H 1.08998 * 109.47218 * 298.98946 * 12 11 10 36 36 H 0.96998 * 120.00023 * 179.97438 * 16 15 13 37 37 H 1.09005 * 109.48957 * 299.34610 * 21 11 10 38 38 H 1.09004 * 109.48333 * 179.29196 * 21 11 10 39 39 H 1.09008 * 109.48564 * 303.15693 * 22 8 7 40 40 H 1.08992 * 109.49364 * 63.19788 * 22 8 7 41 41 H 1.08001 * 119.57239 * 179.97438 * 24 23 7 42 42 H 1.09000 * 113.61399 * 25.43461 * 25 3 2 43 43 H 1.08999 * 113.61022 * 156.33754 * 25 3 2 44 44 H 1.08999 * 113.61972 * 220.02313 * 26 25 3 45 45 H 1.08999 * 113.68563 * 89.12369 * 26 25 3 46 46 H 1.09003 * 113.61260 * 270.88190 * 27 26 25 47 47 H 1.08998 * 113.61737 * 139.97522 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1930 0.6158 -1.2452 5 6 2.7645 0.2017 -2.4998 6 6 3.3228 0.7957 -3.6171 7 6 4.2973 1.7741 -3.4474 8 7 4.8714 2.3749 -4.5617 9 6 5.4620 1.3698 -5.4565 10 6 6.0114 2.0627 -6.7057 11 7 7.0124 3.0625 -6.3079 12 6 7.6191 3.6974 -7.4855 13 6 6.5446 4.3607 -8.3080 14 1 5.5267 4.3849 -7.9481 15 6 6.8611 4.9366 -9.5201 16 7 5.9234 5.5150 -10.2381 17 14 8.6220 4.8952 -10.1423 18 1 8.8322 3.6682 -10.9520 19 1 8.8784 6.0926 -10.9825 20 1 9.5552 4.8919 -8.9873 21 6 6.4219 4.0675 -5.4131 22 6 5.8725 3.3746 -4.1639 23 7 4.6831 2.1377 -2.2343 24 6 4.1636 1.5924 -1.1506 25 6 3.2247 -1.3606 0.3629 26 6 3.1714 -0.9015 1.8324 27 6 3.2238 0.5408 1.3016 28 1 2.0096 -0.5640 -2.6006 29 1 3.0100 0.5005 -4.6078 30 1 6.2721 0.8546 -4.9403 31 1 4.6984 0.6483 -5.7470 32 1 5.1967 2.5551 -7.2365 33 1 6.4758 1.3226 -7.3574 34 1 8.3431 4.4455 -7.1623 35 1 8.1225 2.9408 -8.0873 36 1 6.1461 5.9204 -11.0907 37 1 5.6118 4.5828 -5.9292 38 1 7.1855 4.7892 -5.1226 39 1 5.4081 4.1147 -3.5121 40 1 6.6870 2.8823 -3.6328 41 1 4.5031 1.9137 -0.1770 42 1 2.5736 -2.2070 0.1444 43 1 4.2378 -1.4958 -0.0158 44 1 4.0503 -1.1860 2.4110 45 1 2.2360 -1.1482 2.3346 46 1 4.2366 0.9245 1.1790 47 1 2.5719 1.2284 1.8404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165055445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:00 Heat of formation + Delta-G solvation = 94.336606 kcal Electronic energy + Delta-G solvation = -26998.018263 eV Core-core repulsion = 23374.286037 eV Total energy + Delta-G solvation = -3623.732227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06020 -40.73486 -39.34110 -36.99326 -36.64138 -34.48339 -33.62483 -32.04709 -31.72763 -29.91500 -27.55742 -26.98638 -26.16251 -25.18029 -23.83880 -23.36511 -22.66929 -21.75143 -20.79405 -18.95565 -18.65457 -18.08937 -17.42453 -17.01761 -16.64607 -16.12885 -15.91997 -15.84300 -15.67149 -15.41297 -15.26083 -15.03822 -14.68135 -14.47716 -14.22566 -14.13806 -13.94803 -13.83215 -13.68015 -13.46246 -13.06414 -12.93392 -12.90593 -12.71767 -12.37528 -12.18550 -12.13369 -11.87001 -11.75784 -11.69855 -11.54417 -11.51644 -11.30618 -10.83543 -10.78177 -10.75514 -10.33480 -9.08019 -8.96979 -8.30407 -6.36050 0.07964 0.33589 1.37012 1.38738 1.50805 1.58893 1.63425 2.34902 2.44572 2.69069 2.93934 3.04668 3.26724 3.40616 3.53258 3.64644 3.68847 3.89654 3.93177 3.97430 4.13390 4.16947 4.28637 4.33137 4.40340 4.48041 4.50049 4.63668 4.75948 4.82343 4.87012 4.91220 4.95603 4.96168 5.02887 5.04742 5.07893 5.09894 5.13633 5.19101 5.20206 5.25646 5.45293 5.50045 5.54564 5.71264 6.05042 6.21945 6.33172 6.34522 6.45308 6.71215 7.04813 7.30786 8.85943 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.032960 B = 0.002266 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.303847 B =12354.075500 C =12618.623418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.254 3.746 3 C 0.049 3.951 4 C -0.154 4.154 5 C -0.041 4.041 6 C -0.192 4.192 7 C 0.306 3.694 8 N -0.495 5.495 9 C 0.078 3.922 10 C 0.062 3.938 11 N -0.529 5.529 12 C 0.161 3.839 13 C -0.548 4.548 14 H 0.032 0.968 15 C 0.009 3.991 16 N -0.949 5.949 17 Si 0.952 3.048 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.244 1.244 21 C 0.060 3.940 22 C 0.091 3.909 23 N -0.536 5.536 24 C 0.140 3.860 25 C -0.107 4.107 26 C -0.138 4.138 27 C -0.118 4.118 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.020 0.980 33 H 0.084 0.916 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.265 0.735 37 H 0.013 0.987 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.191 0.809 42 H 0.077 0.923 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.128 0.872 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -16.036 25.194 29.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.063 4.063 3 C 0.045 3.955 4 C -0.158 4.158 5 C -0.067 4.067 6 C -0.215 4.215 7 C 0.075 3.925 8 N -0.212 5.212 9 C -0.048 4.048 10 C -0.067 4.067 11 N -0.253 5.253 12 C 0.034 3.966 13 C -0.587 4.587 14 H 0.051 0.949 15 C -0.189 4.189 16 N -0.589 5.589 17 Si 0.775 3.225 18 H -0.190 1.190 19 H -0.213 1.213 20 H -0.168 1.168 21 C -0.069 4.069 22 C -0.036 4.036 23 N -0.250 5.250 24 C -0.018 4.018 25 C -0.146 4.146 26 C -0.175 4.175 27 C -0.156 4.156 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.038 0.962 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.208 0.792 42 H 0.096 0.904 43 H 0.136 0.864 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.146 0.854 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.594 -15.274 25.029 29.365 hybrid contribution -0.472 0.219 -1.514 1.600 sum -2.066 -15.055 23.515 27.998 Atomic orbital electron populations 1.81288 1.13965 1.10148 1.09785 1.28699 0.94282 0.91643 0.91682 1.18049 0.80249 1.02244 0.94965 1.20134 1.01288 1.00860 0.93568 1.21438 0.96847 0.97171 0.91271 1.21649 0.99299 0.99419 1.01132 1.20046 0.93360 0.90646 0.88483 1.59175 1.33332 1.14929 1.13788 1.22307 0.98285 0.92159 0.92007 1.22016 0.94006 0.94962 0.95743 1.62686 1.30929 1.14762 1.16892 1.20038 0.94157 0.94034 0.88416 1.21885 0.95793 1.36568 1.04478 0.94932 1.25963 1.02068 0.94102 0.96793 1.70091 1.35639 1.39063 1.14128 0.85641 0.79713 0.77966 0.79172 1.19023 1.21297 1.16783 1.22068 0.97559 0.94286 0.92995 1.21867 0.92575 0.93911 0.95227 1.67732 1.28867 1.29878 0.98497 1.23001 0.91382 0.90183 0.97233 1.23163 1.02462 0.92450 0.96503 1.22943 1.03762 0.94868 0.95927 1.23238 1.02955 0.98462 0.90986 0.83754 0.84065 0.92273 0.88015 0.96200 0.89754 0.95086 0.94690 0.92576 0.96819 0.90214 0.89879 0.92207 0.79207 0.90389 0.86442 0.88120 0.90509 0.85391 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.22 18.54 20.01 0.37 -10.85 16 2 C 0.25 4.36 13.65 89.44 1.22 5.58 16 3 C 0.05 0.51 1.10 -54.21 -0.06 0.45 16 4 C -0.15 -2.25 5.01 -19.76 -0.10 -2.35 16 5 C -0.04 -0.72 9.44 22.44 0.21 -0.51 16 6 C -0.19 -4.25 9.21 22.50 0.21 -4.04 16 7 C 0.31 8.11 6.40 133.06 0.85 8.97 16 8 N -0.50 -15.46 4.73 -701.38 -3.32 -18.78 16 9 C 0.08 2.27 5.37 86.31 0.46 2.73 16 10 C 0.06 2.30 5.24 86.31 0.45 2.76 16 11 N -0.53 -21.42 4.92 -900.25 -4.43 -25.85 16 12 C 0.16 7.50 4.21 85.56 0.36 7.86 16 13 C -0.55 -30.94 8.21 25.60 0.21 -30.73 16 14 H 0.03 2.08 6.07 -2.91 -0.02 2.07 16 15 C 0.01 0.49 5.47 84.66 0.46 0.96 16 16 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 17 Si 0.95 43.42 27.37 68.60 1.88 45.30 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.24 -10.29 6.69 99.48 0.67 -9.63 16 21 C 0.06 2.33 5.32 86.31 0.46 2.79 16 22 C 0.09 2.93 4.79 86.31 0.41 3.35 16 23 N -0.54 -12.92 8.71 -193.27 -1.68 -14.60 16 24 C 0.14 2.27 10.35 84.62 0.88 3.15 16 25 C -0.11 -0.62 7.21 31.21 0.23 -0.40 16 26 C -0.14 -0.56 7.80 31.21 0.24 -0.31 16 27 C -0.12 -0.62 6.64 31.12 0.21 -0.41 16 28 H 0.14 2.05 7.94 -2.91 -0.02 2.03 16 29 H 0.14 2.93 7.17 -2.91 -0.02 2.91 16 30 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 2.48 6.78 -2.39 -0.02 2.47 16 32 H 0.02 0.90 6.62 -2.39 -0.02 0.88 16 33 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.03 1.44 7.52 -2.38 -0.02 1.42 16 35 H 0.04 1.58 7.30 -2.39 -0.02 1.56 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.01 0.63 6.78 -2.38 -0.02 0.62 16 38 H 0.08 2.95 8.12 -2.38 -0.02 2.93 16 39 H 0.08 2.62 7.82 -2.38 -0.02 2.60 16 40 H 0.06 1.84 8.05 -2.39 -0.02 1.82 16 41 H 0.19 1.71 5.79 -2.91 -0.02 1.70 16 42 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 43 H 0.12 0.44 8.09 -2.39 -0.02 0.42 16 44 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.08 0.44 8.13 -2.39 -0.02 0.42 16 46 H 0.13 0.18 6.02 -2.39 -0.01 0.17 16 47 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 Total: -1.00 -73.24 371.67 0.76 -72.47 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.94 Total: 11.49 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.71 Total: -0.15 kcal Atomic # 7 Polarization: -120.35 SS G_CDS: -8.76 Total: -129.11 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.88 Total: 45.30 kcal Total: -73.24 0.76 -72.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.810 kcal (2) G-P(sol) polarization free energy of solvation -73.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds