Wall clock time and date at job start Tue Mar 31 2020 14:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35919 * 116.99663 * 2 1 4 4 C 1.39745 * 119.61725 * 359.97438 * 3 2 1 5 5 C 1.36171 * 120.92235 * 179.97438 * 4 3 2 6 6 C 1.40189 * 119.69996 * 0.02562 * 5 4 3 7 7 C 1.40945 * 122.04426 * 180.02562 * 6 5 4 8 8 C 1.35999 * 118.88491 * 180.02562 * 7 6 5 9 9 N 1.32715 * 121.99905 * 0.02562 * 8 7 6 10 10 C 1.31900 * 122.62157 * 359.97438 * 9 8 7 11 11 N 1.38504 * 120.13613 * 179.97438 * 10 9 8 12 12 C 1.46900 * 110.99819 * 254.13848 * 11 10 9 13 13 C 1.50706 * 109.47156 * 213.56366 * 12 11 10 14 14 H 1.07997 * 119.99412 * 5.33642 * 13 12 11 15 15 C 1.37878 * 120.00145 * 185.60647 * 13 12 11 16 16 N 1.31511 * 119.99574 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99793 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47094 * 60.00292 * 17 15 13 19 19 H 1.48498 * 109.46815 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47405 * 300.00355 * 17 15 13 21 21 C 1.46896 * 111.00078 * 18.09721 * 11 10 9 22 22 C 1.54269 * 110.03095 * 293.46786 * 21 11 10 23 23 C 1.54882 * 104.19733 * 217.10521 * 22 21 11 24 24 C 1.54895 * 102.74937 * 37.94708 * 23 22 21 25 25 C 1.53875 * 110.03190 * 176.30681 * 21 11 10 26 26 C 1.41323 * 119.72318 * 0.27135 * 10 9 8 27 27 C 1.37743 * 119.61634 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46977 * 60.00768 * 1 2 3 29 29 H 1.09006 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47272 * 300.00395 * 1 2 3 31 31 H 1.07995 * 119.53874 * 359.96387 * 4 3 2 32 32 H 1.07995 * 120.14975 * 180.02562 * 5 4 3 33 33 H 1.08003 * 120.55345 * 359.97278 * 7 6 5 34 34 H 1.07999 * 119.00185 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47086 * 93.56654 * 12 11 10 36 36 H 1.08997 * 109.47418 * 333.56506 * 12 11 10 37 37 H 0.97005 * 119.99725 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.01956 * 54.91162 * 21 11 10 39 39 H 1.09005 * 110.48795 * 335.78473 * 22 21 11 40 40 H 1.09007 * 110.48380 * 98.42611 * 22 21 11 41 41 H 1.09002 * 110.76004 * 279.62604 * 23 22 21 42 42 H 1.09002 * 110.91579 * 156.32762 * 23 22 21 43 43 H 1.08998 * 110.48423 * 203.37955 * 24 23 22 44 44 H 1.08993 * 110.48885 * 80.73236 * 24 23 22 45 45 H 1.09000 * 110.02934 * 238.56414 * 25 21 11 46 46 H 1.09000 * 110.03353 * 359.94399 * 25 21 11 47 47 H 1.08003 * 120.29980 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2770 2.3779 -0.0005 5 6 1.8674 3.6050 0.0000 6 6 3.2658 3.7030 0.0005 7 6 3.9283 4.9471 0.0016 8 6 5.2881 4.9672 0.0015 9 7 6.0080 3.8523 0.0000 10 6 5.4604 2.6523 -0.0011 11 7 6.2614 1.5224 -0.0032 12 6 6.2589 0.8779 -1.3233 13 6 6.3760 -0.6150 -1.1536 14 1 6.3585 -1.0490 -0.1649 15 6 6.5111 -1.4261 -2.2604 16 7 6.5382 -0.8969 -3.4640 17 14 6.6555 -3.2766 -2.0500 18 1 5.4398 -3.7941 -1.3722 19 1 6.7902 -3.9172 -3.3829 20 1 7.8517 -3.5895 -1.2277 21 6 7.6297 1.8463 0.4220 22 6 8.3065 2.7565 -0.6236 23 6 9.7776 2.2729 -0.6528 24 6 9.6359 0.7380 -0.5002 25 6 8.4750 0.5629 0.5004 26 6 4.0530 2.5244 -0.0064 27 6 3.4220 1.2740 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.1995 2.3055 -0.0016 32 1 1.2610 4.4987 0.0000 33 1 3.3654 5.8688 0.0016 34 1 5.7977 5.9194 0.0028 35 1 7.1026 1.2444 -1.9081 36 1 5.3288 1.1129 -1.8407 37 1 6.6336 -1.4676 -4.2426 38 1 7.6113 2.3413 1.3930 39 1 7.8424 2.6253 -1.6011 40 1 8.2540 3.7998 -0.3122 41 1 10.3393 2.6938 0.1812 42 1 10.2512 2.5246 -1.6017 43 1 10.5537 0.3082 -0.0988 44 1 9.3865 0.2808 -1.4577 45 1 8.8676 0.4355 1.5092 46 1 7.8697 -0.3004 0.2239 47 1 4.0090 0.3674 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166533641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:34 Heat of formation + Delta-G solvation = 36.617093 kcal Electronic energy + Delta-G solvation = -28847.430392 eV Core-core repulsion = 25188.902509 eV Total energy + Delta-G solvation = -3658.527884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.79433 -39.27954 -38.12917 -35.87552 -34.61155 -32.75426 -31.31634 -30.55492 -29.07023 -27.93898 -27.51844 -26.80741 -25.95071 -23.48168 -22.73097 -22.37183 -21.08917 -19.89508 -18.86657 -18.13309 -17.15934 -16.76415 -16.44102 -15.74189 -15.54235 -15.45382 -14.78969 -14.45657 -14.30242 -14.17930 -13.76826 -13.52811 -13.40149 -12.96969 -12.76898 -12.56965 -12.31269 -12.10942 -12.01691 -11.61539 -11.37035 -11.14039 -10.94438 -10.77617 -10.73038 -10.57680 -10.51427 -10.39470 -10.23672 -10.15077 -9.84102 -9.68431 -9.29774 -9.16626 -8.84957 -8.59355 -8.43253 -7.93734 -6.93279 -6.07505 -4.07545 0.80247 1.30707 2.32531 3.32607 3.36886 3.38828 3.40961 3.51182 4.24748 4.46760 4.54659 4.79682 4.94899 5.01133 5.16118 5.19798 5.26232 5.29686 5.39305 5.41144 5.44574 5.50081 5.57621 5.65006 5.75027 5.96119 6.06786 6.12683 6.24649 6.29110 6.33662 6.36402 6.40535 6.44348 6.60728 6.64660 6.66769 6.72146 6.80433 6.93061 6.94546 7.00327 7.16007 7.22500 7.30807 7.46961 7.66282 7.70933 7.94617 8.08262 8.39587 8.60611 8.94281 9.53149 11.01968 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.006130 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.297571 B = 4566.840204 C = 6965.820083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.093 3.907 4 C -0.164 4.164 5 C -0.097 4.097 6 C -0.035 4.035 7 C -0.201 4.201 8 C 0.098 3.902 9 N -0.535 5.535 10 C 0.374 3.626 11 N -0.471 5.471 12 C 0.194 3.806 13 C -0.504 4.504 14 H 0.070 0.930 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.275 1.275 21 C 0.104 3.896 22 C -0.133 4.133 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.141 4.141 26 C -0.075 4.075 27 C -0.083 4.083 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.142 0.858 35 H 0.035 0.965 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.122 0.878 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 8.041 6.618 12.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.049 3.951 4 C -0.184 4.184 5 C -0.115 4.115 6 C -0.040 4.040 7 C -0.222 4.222 8 C -0.046 4.046 9 N -0.250 5.250 10 C 0.129 3.871 11 N -0.188 5.188 12 C 0.072 3.928 13 C -0.543 4.543 14 H 0.088 0.912 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.004 4.004 22 C -0.172 4.172 23 C -0.164 4.164 24 C -0.155 4.155 25 C -0.178 4.178 26 C -0.079 4.079 27 C -0.104 4.104 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.159 0.841 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.140 0.860 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.369 7.592 6.744 11.987 hybrid contribution -0.897 -0.260 -0.490 1.054 sum -7.265 7.333 6.254 12.069 Atomic orbital electron populations 1.22991 0.79315 1.03641 1.00743 1.86169 1.20511 1.26676 1.89156 1.18922 0.92231 0.83951 1.00028 1.21058 0.99858 0.92542 1.04941 1.20587 0.93063 0.97109 1.00768 1.17993 0.93474 0.92838 0.99714 1.21487 0.95832 0.96656 1.08260 1.21859 0.91047 0.96079 0.95657 1.67931 1.40416 0.97962 1.18704 1.20424 0.89569 0.88851 0.88268 1.59655 1.10480 1.17897 1.30802 1.20107 0.97982 0.94333 0.80365 1.21002 1.50029 0.90216 0.93027 0.91173 1.24923 0.95281 0.98736 0.95095 1.69937 1.49698 1.35572 0.97813 0.86628 0.78873 0.85252 0.77202 1.20029 1.21418 1.20052 1.22086 0.86001 0.95000 0.97293 1.22947 0.94302 0.99687 1.00219 1.22494 0.97250 0.96623 1.00003 1.22274 0.97274 0.95251 1.00695 1.22639 0.96942 1.00848 0.97356 1.18221 0.93029 0.92963 1.03709 1.20793 0.91282 0.98863 0.99432 0.92999 0.88511 0.93127 0.85600 0.85437 0.85637 0.84066 0.94722 0.95731 0.92740 0.91522 0.91145 0.90973 0.92764 0.92773 0.93304 0.90803 0.93686 0.86001 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.80 101.05 0.99 1.30 16 2 O -0.31 -5.12 10.48 -19.49 -0.20 -5.32 16 3 C 0.09 1.60 6.67 -39.20 -0.26 1.34 16 4 C -0.16 -2.30 8.94 -39.76 -0.36 -2.66 16 5 C -0.10 -1.35 9.79 -39.59 -0.39 -1.74 16 6 C -0.04 -0.58 5.75 -106.81 -0.61 -1.20 16 7 C -0.20 -2.96 9.86 -39.36 -0.39 -3.34 16 8 C 0.10 1.55 11.06 -17.97 -0.20 1.35 16 9 N -0.53 -10.06 6.87 -12.44 -0.09 -10.15 16 10 C 0.37 7.65 5.76 -155.09 -0.89 6.76 16 11 N -0.47 -10.14 3.83 -165.31 -0.63 -10.77 16 12 C 0.19 4.75 3.34 -4.97 -0.02 4.74 16 13 C -0.50 -12.97 6.80 -34.44 -0.23 -13.21 16 14 H 0.07 1.80 6.76 -52.49 -0.35 1.44 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 17 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.10 2.05 2.64 -66.60 -0.18 1.88 16 22 C -0.13 -2.52 4.53 -25.07 -0.11 -2.64 16 23 C -0.13 -2.15 6.91 -24.74 -0.17 -2.32 16 24 C -0.12 -2.17 6.83 -25.07 -0.17 -2.34 16 25 C -0.14 -2.74 6.00 -25.61 -0.15 -2.89 16 26 C -0.07 -1.46 5.43 -106.71 -0.58 -2.04 16 27 C -0.08 -1.65 8.68 -39.08 -0.34 -1.99 16 28 H 0.05 0.50 7.64 -51.93 -0.40 0.10 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.46 7.64 -51.93 -0.40 0.06 16 31 H 0.13 1.34 6.22 -52.49 -0.33 1.02 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.04 0.92 5.41 -51.93 -0.28 0.64 16 36 H 0.02 0.66 6.82 -51.93 -0.35 0.31 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 39 H 0.07 1.54 5.67 -51.93 -0.29 1.24 16 40 H 0.07 1.32 7.09 -51.93 -0.37 0.95 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.12 2.71 4.06 -51.93 -0.21 2.50 16 47 H 0.16 3.56 6.74 -52.48 -0.35 3.21 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -28.88 363.04 -10.59 -39.47 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.70 Total: 7.38 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -4.16 Total: -17.45 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.02 Total: -45.31 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.20 Total: -5.32 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.88 -10.59 -39.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.086 kcal (2) G-P(sol) polarization free energy of solvation -28.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds