Wall clock time and date at job start Tue Mar 31 2020 14:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35919 * 116.99663 * 2 1 4 4 C 1.39745 * 119.61725 * 359.97438 * 3 2 1 5 5 C 1.36171 * 120.92235 * 179.97438 * 4 3 2 6 6 C 1.40189 * 119.69996 * 0.02562 * 5 4 3 7 7 C 1.40945 * 122.04426 * 180.02562 * 6 5 4 8 8 C 1.35999 * 118.88491 * 180.02562 * 7 6 5 9 9 N 1.32715 * 121.99905 * 0.02562 * 8 7 6 10 10 C 1.31900 * 122.62157 * 359.97438 * 9 8 7 11 11 N 1.38504 * 120.13613 * 179.97438 * 10 9 8 12 12 C 1.46900 * 110.99819 * 254.13848 * 11 10 9 13 13 C 1.50706 * 109.47156 * 213.56366 * 12 11 10 14 14 H 1.07997 * 119.99412 * 5.33642 * 13 12 11 15 15 C 1.37878 * 120.00145 * 185.60647 * 13 12 11 16 16 N 1.31511 * 119.99574 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99793 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47094 * 60.00292 * 17 15 13 19 19 H 1.48498 * 109.46815 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47405 * 300.00355 * 17 15 13 21 21 C 1.46896 * 111.00078 * 18.09721 * 11 10 9 22 22 C 1.54269 * 110.03095 * 293.46786 * 21 11 10 23 23 C 1.54882 * 104.19733 * 217.10521 * 22 21 11 24 24 C 1.54895 * 102.74937 * 37.94708 * 23 22 21 25 25 C 1.53875 * 110.03190 * 176.30681 * 21 11 10 26 26 C 1.41323 * 119.72318 * 0.27135 * 10 9 8 27 27 C 1.37743 * 119.61634 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46977 * 60.00768 * 1 2 3 29 29 H 1.09006 * 109.46813 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47272 * 300.00395 * 1 2 3 31 31 H 1.07995 * 119.53874 * 359.96387 * 4 3 2 32 32 H 1.07995 * 120.14975 * 180.02562 * 5 4 3 33 33 H 1.08003 * 120.55345 * 359.97278 * 7 6 5 34 34 H 1.07999 * 119.00185 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.47086 * 93.56654 * 12 11 10 36 36 H 1.08997 * 109.47418 * 333.56506 * 12 11 10 37 37 H 0.97005 * 119.99725 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.01956 * 54.91162 * 21 11 10 39 39 H 1.09005 * 110.48795 * 335.78473 * 22 21 11 40 40 H 1.09007 * 110.48380 * 98.42611 * 22 21 11 41 41 H 1.09002 * 110.76004 * 279.62604 * 23 22 21 42 42 H 1.09002 * 110.91579 * 156.32762 * 23 22 21 43 43 H 1.08998 * 110.48423 * 203.37955 * 24 23 22 44 44 H 1.08993 * 110.48885 * 80.73236 * 24 23 22 45 45 H 1.09000 * 110.02934 * 238.56414 * 25 21 11 46 46 H 1.09000 * 110.03353 * 359.94399 * 25 21 11 47 47 H 1.08003 * 120.29980 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2770 2.3779 -0.0005 5 6 1.8674 3.6050 0.0000 6 6 3.2658 3.7030 0.0005 7 6 3.9283 4.9471 0.0016 8 6 5.2881 4.9672 0.0015 9 7 6.0080 3.8523 0.0000 10 6 5.4604 2.6523 -0.0011 11 7 6.2614 1.5224 -0.0032 12 6 6.2589 0.8779 -1.3233 13 6 6.3760 -0.6150 -1.1536 14 1 6.3585 -1.0490 -0.1649 15 6 6.5111 -1.4261 -2.2604 16 7 6.5382 -0.8969 -3.4640 17 14 6.6555 -3.2766 -2.0500 18 1 5.4398 -3.7941 -1.3722 19 1 6.7902 -3.9172 -3.3829 20 1 7.8517 -3.5895 -1.2277 21 6 7.6297 1.8463 0.4220 22 6 8.3065 2.7565 -0.6236 23 6 9.7776 2.2729 -0.6528 24 6 9.6359 0.7380 -0.5002 25 6 8.4750 0.5629 0.5004 26 6 4.0530 2.5244 -0.0064 27 6 3.4220 1.2740 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.1995 2.3055 -0.0016 32 1 1.2610 4.4987 0.0000 33 1 3.3654 5.8688 0.0016 34 1 5.7977 5.9194 0.0028 35 1 7.1026 1.2444 -1.9081 36 1 5.3288 1.1129 -1.8407 37 1 6.6336 -1.4676 -4.2426 38 1 7.6113 2.3413 1.3930 39 1 7.8424 2.6253 -1.6011 40 1 8.2540 3.7998 -0.3122 41 1 10.3393 2.6938 0.1812 42 1 10.2512 2.5246 -1.6017 43 1 10.5537 0.3082 -0.0988 44 1 9.3865 0.2808 -1.4577 45 1 8.8676 0.4355 1.5092 46 1 7.8697 -0.3004 0.2239 47 1 4.0090 0.3674 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166533641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:33 Heat of formation + Delta-G solvation = 21.307138 kcal Electronic energy + Delta-G solvation = -28848.094282 eV Core-core repulsion = 25188.902509 eV Total energy + Delta-G solvation = -3659.191773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.14035 -40.61059 -39.52952 -37.13769 -36.14029 -34.72518 -32.68778 -31.83233 -30.45349 -29.48618 -29.20449 -27.87955 -27.54905 -24.99002 -24.14788 -23.88584 -22.48177 -21.40335 -20.35935 -19.41135 -18.67837 -18.34591 -18.10235 -17.06322 -16.83366 -16.65128 -16.53959 -15.90821 -15.69070 -15.58769 -15.14511 -14.89526 -14.77584 -14.44598 -14.28424 -13.95760 -13.86792 -13.43984 -13.20768 -13.06217 -12.92109 -12.81592 -12.58097 -12.47257 -12.26711 -12.06197 -11.90858 -11.88878 -11.76322 -11.67756 -11.50721 -11.25102 -10.99255 -10.77655 -10.51462 -10.24390 -9.81309 -9.48396 -8.31398 -8.15402 -6.20910 -0.48815 0.03425 1.02548 1.41438 1.43595 1.50584 2.12617 2.40360 2.42192 2.89444 3.15289 3.21124 3.68346 3.71939 3.85789 3.92945 3.94946 4.05729 4.13438 4.23284 4.32251 4.39223 4.42633 4.43372 4.61873 4.71421 4.72044 4.75899 4.81225 4.81865 4.89983 4.94135 4.99091 5.09454 5.14933 5.16195 5.19011 5.24244 5.31459 5.37574 5.41782 5.52391 5.60685 5.64755 5.70206 5.79422 5.87152 6.06832 6.23906 6.49668 6.70473 6.85118 7.22215 7.42820 8.94101 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.009431 B = 0.006130 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.297571 B = 4566.840204 C = 6965.820083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.344 6.344 3 C 0.102 3.898 4 C -0.164 4.164 5 C -0.074 4.074 6 C -0.059 4.059 7 C -0.169 4.169 8 C 0.070 3.930 9 N -0.539 5.539 10 C 0.330 3.670 11 N -0.480 5.480 12 C 0.225 3.775 13 C -0.498 4.498 14 H 0.065 0.935 15 C 0.012 3.988 16 N -0.929 5.929 17 Si 0.953 3.047 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.104 3.896 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.141 4.141 26 C -0.092 4.092 27 C -0.136 4.136 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.169 0.831 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.008 0.992 36 H -0.014 1.014 37 H 0.262 0.738 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.063 10.389 8.085 15.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.258 6.258 3 C 0.057 3.943 4 C -0.183 4.183 5 C -0.092 4.092 6 C -0.064 4.064 7 C -0.190 4.190 8 C -0.075 4.075 9 N -0.254 5.254 10 C 0.086 3.914 11 N -0.197 5.197 12 C 0.102 3.898 13 C -0.536 4.536 14 H 0.083 0.917 15 C -0.186 4.186 16 N -0.569 5.569 17 Si 0.778 3.222 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.189 1.189 21 C -0.004 4.004 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.151 4.151 25 C -0.178 4.178 26 C -0.096 4.096 27 C -0.157 4.157 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.187 0.813 32 H 0.196 0.804 33 H 0.192 0.808 34 H 0.194 0.806 35 H 0.025 0.975 36 H 0.004 0.996 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.253 9.952 8.237 15.330 hybrid contribution -0.530 -0.847 -0.903 1.347 sum -8.784 9.105 7.335 14.623 Atomic orbital electron populations 1.23388 0.76246 1.05533 1.02606 1.86135 1.23815 1.27015 1.88829 1.19117 0.91596 0.85520 0.98111 1.21444 1.01690 0.91182 1.04022 1.21163 0.91974 0.98855 0.97182 1.18441 0.94993 0.92478 1.00488 1.22012 0.95616 0.97540 1.03807 1.22490 0.92201 0.96186 0.96585 1.67820 1.41652 0.98318 1.17574 1.20429 0.90131 0.88994 0.91860 1.59536 1.11532 1.19617 1.29039 1.19493 0.94586 0.93903 0.81818 1.21186 1.48598 0.91145 0.92713 0.91689 1.25685 0.95196 1.02975 0.94754 1.70070 1.51413 1.36960 0.98495 0.85673 0.79091 0.80178 0.77225 1.19810 1.21095 1.18931 1.22139 0.85508 0.95216 0.97516 1.22786 0.95361 1.00038 0.97919 1.22473 0.96114 0.95275 1.01534 1.22201 0.97897 0.96445 0.98594 1.22582 0.96942 0.99458 0.98834 1.18420 0.93051 0.94095 1.04016 1.20494 0.92732 0.97791 1.04642 0.91415 0.86912 0.90720 0.81338 0.80417 0.80789 0.80629 0.97486 0.99568 0.92896 0.91003 0.94889 0.90140 0.89800 0.92204 0.90628 0.94581 0.91347 0.89166 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.80 113.37 1.11 1.43 16 2 O -0.34 -11.44 10.48 -92.64 -0.97 -12.41 16 3 C 0.10 3.53 6.67 22.52 0.15 3.68 16 4 C -0.16 -4.10 8.94 22.15 0.20 -3.90 16 5 C -0.07 -1.75 9.79 22.26 0.22 -1.53 16 6 C -0.06 -1.84 5.75 -21.28 -0.12 -1.96 16 7 C -0.17 -4.39 9.86 22.41 0.22 -4.17 16 8 C 0.07 2.07 11.06 84.04 0.93 3.00 16 9 N -0.54 -20.64 6.87 -193.26 -1.33 -21.96 16 10 C 0.33 14.31 5.76 133.92 0.77 15.08 16 11 N -0.48 -22.40 3.83 -676.90 -2.59 -25.00 16 12 C 0.23 12.18 3.34 85.56 0.29 12.46 16 13 C -0.50 -27.79 6.80 25.60 0.17 -27.62 16 14 H 0.07 3.62 6.76 -2.91 -0.02 3.60 16 15 C 0.01 0.70 5.46 84.66 0.46 1.16 16 16 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 17 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 21 C 0.10 4.30 2.64 45.64 0.12 4.42 16 22 C -0.12 -4.83 4.53 31.67 0.14 -4.68 16 23 C -0.12 -3.94 6.91 31.88 0.22 -3.72 16 24 C -0.11 -4.30 6.83 31.67 0.22 -4.09 16 25 C -0.14 -5.70 6.00 31.32 0.19 -5.51 16 26 C -0.09 -3.74 5.43 -21.22 -0.12 -3.86 16 27 C -0.14 -5.81 8.68 22.59 0.20 -5.62 16 28 H 0.07 1.10 7.64 -2.39 -0.02 1.08 16 29 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.07 1.09 7.64 -2.39 -0.02 1.07 16 31 H 0.17 2.72 6.22 -2.91 -0.02 2.70 16 32 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.01 0.44 5.41 -2.39 -0.01 0.42 16 36 H -0.01 -0.83 6.82 -2.39 -0.02 -0.85 16 37 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 38 H 0.07 2.86 8.10 -2.39 -0.02 2.84 16 39 H 0.03 1.55 5.67 -2.38 -0.01 1.53 16 40 H 0.08 2.98 7.09 -2.38 -0.02 2.96 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 45 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.09 4.28 4.06 -2.39 -0.01 4.27 16 47 H 0.12 5.87 6.74 -2.91 -0.02 5.85 16 Total: -1.00 -71.70 363.04 3.77 -67.93 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.98 Total: 25.68 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 5.37 Total: -25.42 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -3.64 Total: -102.48 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.97 Total: -12.41 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -71.70 3.77 -67.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.235 kcal (2) G-P(sol) polarization free energy of solvation -71.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds