Wall clock time and date at job start Tue Mar 31 2020 14:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35836 * 117.00513 * 2 1 4 4 C 1.39833 * 119.62043 * 359.97438 * 3 2 1 5 5 C 1.36030 * 120.79281 * 179.97438 * 4 3 2 6 6 C 1.40408 * 119.86502 * 0.02562 * 5 4 3 7 7 C 1.40959 * 121.13347 * 180.25158 * 6 5 4 8 8 C 1.36259 * 118.32648 * 180.21213 * 7 6 5 9 9 C 1.40192 * 119.89809 * 359.51147 * 8 7 6 10 10 N 1.38685 * 119.24219 * 180.25550 * 9 8 7 11 11 C 1.46494 * 120.00454 * 168.76043 * 10 9 8 12 12 C 1.50700 * 109.47353 * 89.99603 * 11 10 9 13 13 H 1.07998 * 119.99722 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00051 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00050 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00095 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47001 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47358 * 120.00221 * 16 14 12 19 19 H 1.48504 * 109.47206 * 240.00213 * 16 14 12 20 20 C 1.46502 * 119.99566 * 348.75856 * 10 9 8 21 21 C 1.54269 * 110.03288 * 231.69615 * 20 10 9 22 22 C 1.54878 * 104.20032 * 217.10715 * 21 20 10 23 23 C 1.54893 * 102.75020 * 37.94253 * 22 21 20 24 24 C 1.53876 * 110.03136 * 114.53532 * 20 10 9 25 25 N 1.31745 * 121.51771 * 0.27201 * 9 8 7 26 26 C 1.33844 * 121.24353 * 359.97438 * 25 9 8 27 27 C 1.37631 * 119.62691 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47133 * 300.00252 * 1 2 3 29 29 H 1.08998 * 109.47025 * 60.00079 * 1 2 3 30 30 H 1.08997 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.59950 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.07235 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.83623 * 359.97318 * 7 6 5 34 34 H 1.08002 * 120.04965 * 179.78388 * 8 7 6 35 35 H 1.09000 * 109.47221 * 209.99716 * 11 10 9 36 36 H 1.09007 * 109.47328 * 329.99911 * 11 10 9 37 37 H 0.96997 * 119.99744 * 179.97438 * 15 14 12 38 38 H 1.08999 * 110.02229 * 353.13993 * 20 10 9 39 39 H 1.09007 * 110.48243 * 335.78815 * 21 20 10 40 40 H 1.09001 * 110.48479 * 98.42665 * 21 20 10 41 41 H 1.08995 * 110.75940 * 279.62957 * 22 21 20 42 42 H 1.08998 * 110.92108 * 156.32841 * 22 21 20 43 43 H 1.09000 * 110.48905 * 203.38335 * 23 22 21 44 44 H 1.08996 * 110.48519 * 80.73420 * 23 22 21 45 45 H 1.09001 * 110.02716 * 238.56327 * 24 20 10 46 46 H 1.08993 * 110.03464 * 359.94685 * 24 20 10 47 47 H 1.08009 * 120.18596 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2765 2.3780 -0.0005 5 6 1.8693 3.6023 0.0000 6 6 3.2699 3.7011 0.0005 7 6 3.9120 4.9559 0.0063 8 6 5.2743 4.9850 0.0021 9 6 5.9989 3.7849 0.0026 10 7 7.3850 3.8305 0.0036 11 6 8.1579 2.6109 0.2514 12 6 8.4330 1.9160 -1.0572 13 1 8.0689 2.3406 -1.9811 14 6 9.1495 0.7381 -1.0750 15 7 9.5924 0.2208 0.0502 16 14 9.4912 -0.1229 -2.6970 17 1 8.8899 0.6577 -3.8081 18 1 10.9581 -0.2269 -2.9030 19 1 8.8975 -1.4839 -2.6697 20 6 8.0764 5.0984 -0.2431 21 6 9.1259 4.9195 -1.3595 22 6 10.3115 5.8103 -0.9127 23 6 10.3346 5.6039 0.6223 24 6 8.8449 5.5335 1.0170 25 7 5.3935 2.6148 0.0017 26 6 4.0581 2.5241 0.0008 27 6 3.4206 1.2732 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.1988 2.3069 -0.0014 32 1 1.2638 4.4967 0.0000 33 1 3.3387 5.8712 0.0101 34 1 5.7950 5.9313 0.0029 35 1 9.1019 2.8701 0.7306 36 1 7.5899 1.9468 0.9030 37 1 10.0962 -0.6080 0.0377 38 1 7.3569 5.8669 -0.5256 39 1 9.4365 3.8768 -1.4275 40 1 8.7291 5.2634 -2.3147 41 1 10.1238 6.8553 -1.1591 42 1 11.2445 5.4706 -1.3621 43 1 10.8199 6.4474 1.1133 44 1 10.8404 4.6719 0.8743 45 1 8.4990 6.5136 1.3454 46 1 8.7028 4.8019 1.8123 47 1 4.0058 0.3654 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166533690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:30 Heat of formation + Delta-G solvation = 23.926652 kcal Electronic energy + Delta-G solvation = -27830.430264 eV Core-core repulsion = 24171.352082 eV Total energy + Delta-G solvation = -3659.078182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.46276 -39.23066 -38.17148 -35.88932 -33.88111 -32.86941 -32.38256 -29.86181 -29.12381 -28.30936 -27.91967 -26.95167 -26.07043 -23.65596 -22.50375 -21.99635 -21.21970 -20.24194 -19.36466 -18.14234 -17.12986 -16.92838 -16.33713 -16.09829 -15.64428 -15.33039 -14.93384 -14.64460 -14.40750 -14.00035 -13.88313 -13.68120 -13.28214 -12.97389 -12.89886 -12.65148 -12.37557 -12.20239 -11.91496 -11.56892 -11.45577 -11.30229 -11.13532 -10.88073 -10.82800 -10.76060 -10.67405 -10.61590 -10.53989 -10.26652 -10.14141 -9.84783 -9.78073 -9.46685 -8.62417 -8.53337 -8.34847 -7.62002 -6.71854 -5.94818 -3.98549 0.92514 1.46655 2.51641 3.33465 3.34462 3.40491 3.42334 3.46336 3.82071 4.49805 4.70893 4.79468 4.95993 5.01485 5.06573 5.09478 5.11914 5.17335 5.22133 5.33962 5.36632 5.37919 5.41476 5.50600 5.61326 5.74258 5.89099 5.94981 5.98397 5.99773 6.05639 6.21977 6.23759 6.28377 6.30706 6.42658 6.44102 6.58412 6.60966 6.67592 6.71663 6.79922 6.99945 7.17790 7.21991 7.53547 7.60151 7.90154 8.03918 8.32705 8.34390 8.97879 9.07968 9.63528 11.10444 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.004305 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.243517 B = 6502.185175 C = 8534.720467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.143 3.857 4 C -0.230 4.230 5 C -0.037 4.037 6 C -0.196 4.196 7 C -0.026 4.026 8 C -0.230 4.230 9 C 0.441 3.559 10 N -0.574 5.574 11 C 0.256 3.744 12 C -0.508 4.508 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.284 1.284 20 C 0.149 3.851 21 C -0.149 4.149 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.135 4.135 25 N -0.529 5.529 26 C 0.228 3.772 27 C -0.156 4.156 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.146 10.704 1.060 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.230 6.230 3 C 0.096 3.904 4 C -0.249 4.249 5 C -0.056 4.056 6 C -0.200 4.200 7 C -0.051 4.051 8 C -0.253 4.253 9 C 0.192 3.808 10 N -0.281 5.281 11 C 0.137 3.863 12 C -0.547 4.547 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.210 1.210 20 C 0.044 3.956 21 C -0.187 4.187 22 C -0.159 4.159 23 C -0.158 4.158 24 C -0.174 4.174 25 N -0.250 5.250 26 C 0.101 3.899 27 C -0.177 4.177 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.267 9.578 1.144 14.832 hybrid contribution -0.573 0.310 -0.925 1.131 sum -11.840 9.888 0.219 15.427 Atomic orbital electron populations 1.22994 0.78984 1.03515 1.01075 1.86080 1.20875 1.27254 1.88832 1.18780 0.91818 0.83744 0.96015 1.20753 0.99480 0.92411 1.12304 1.20597 0.93055 0.96848 0.95071 1.18595 0.94207 0.94341 1.12898 1.21045 0.93916 0.96380 0.93747 1.21414 0.94848 0.98420 1.10665 1.18612 0.86172 0.88346 0.87626 1.47369 1.00745 1.10252 1.69732 1.19230 0.90344 0.79818 0.96955 1.21414 1.33052 1.06989 0.93236 0.92430 1.24886 0.96043 0.96865 0.96164 1.69936 1.37527 1.20389 1.25561 0.86564 0.77577 0.79830 0.84193 1.19902 1.21195 1.20987 1.21668 0.93930 0.85266 0.94736 1.23062 0.94588 1.04496 0.96522 1.22413 0.98843 0.98851 0.95750 1.22302 0.96086 1.01506 0.95903 1.22561 0.95572 1.00812 0.98421 1.67932 1.08014 1.25075 1.23970 1.18190 0.88527 0.91357 0.91778 1.19991 0.90674 0.97682 1.09328 0.92874 0.92872 0.88601 0.85946 0.86018 0.85345 0.85306 0.95088 0.93892 0.92963 0.90477 0.86265 0.92525 0.92506 0.91746 0.92449 0.91054 0.92145 0.90887 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.80 101.05 0.99 1.27 16 2 O -0.32 -4.68 10.47 -19.22 -0.20 -4.88 16 3 C 0.14 2.31 6.67 -39.21 -0.26 2.05 16 4 C -0.23 -3.09 8.94 -39.78 -0.36 -3.44 16 5 C -0.04 -0.50 9.75 -39.56 -0.39 -0.88 16 6 C -0.20 -3.25 5.75 -106.75 -0.61 -3.86 16 7 C -0.03 -0.38 9.87 -39.26 -0.39 -0.76 16 8 C -0.23 -3.77 9.14 -39.56 -0.36 -4.13 16 9 C 0.44 9.13 7.32 -155.48 -1.14 7.99 16 10 N -0.57 -11.98 2.45 -166.28 -0.41 -12.39 16 11 C 0.26 6.43 4.25 -5.20 -0.02 6.41 16 12 C -0.51 -13.83 7.20 -34.44 -0.25 -14.07 16 13 H 0.06 1.61 7.63 -52.49 -0.40 1.21 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 C 0.15 2.51 3.10 -66.81 -0.21 2.31 16 21 C -0.15 -2.57 6.30 -25.08 -0.16 -2.72 16 22 C -0.12 -1.71 6.91 -24.74 -0.17 -1.88 16 23 C -0.12 -1.73 6.83 -25.07 -0.17 -1.90 16 24 C -0.13 -2.03 6.05 -25.61 -0.15 -2.19 16 25 N -0.53 -12.12 9.19 -10.23 -0.09 -12.21 16 26 C 0.23 4.59 6.60 -84.87 -0.56 4.03 16 27 C -0.16 -3.00 9.94 -38.99 -0.39 -3.39 16 28 H 0.05 0.43 7.64 -51.93 -0.40 0.04 16 29 H 0.05 0.44 7.64 -51.93 -0.40 0.04 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.12 1.25 6.23 -52.49 -0.33 0.92 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.13 1.76 5.95 -52.49 -0.31 1.45 16 35 H 0.03 0.80 7.32 -51.93 -0.38 0.42 16 36 H 0.04 1.23 7.55 -51.93 -0.39 0.84 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.08 1.14 5.56 -51.93 -0.29 0.85 16 39 H 0.12 2.54 4.92 -51.93 -0.26 2.29 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 1.24 7.39 -51.93 -0.38 0.86 16 47 H 0.14 2.83 8.06 -52.48 -0.42 2.40 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -31.61 373.42 -10.94 -42.56 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.90 Total: 3.36 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -4.69 Total: -13.54 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.24 Total: -50.02 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.20 Total: -4.88 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.61 -10.94 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.486 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds