Wall clock time and date at job start Tue Mar 31 2020 14:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35836 * 117.00513 * 2 1 4 4 C 1.39833 * 119.62043 * 359.97438 * 3 2 1 5 5 C 1.36030 * 120.79281 * 179.97438 * 4 3 2 6 6 C 1.40408 * 119.86502 * 0.02562 * 5 4 3 7 7 C 1.40959 * 121.13347 * 180.25158 * 6 5 4 8 8 C 1.36259 * 118.32648 * 180.21213 * 7 6 5 9 9 C 1.40192 * 119.89809 * 359.51147 * 8 7 6 10 10 N 1.38685 * 119.24219 * 180.25550 * 9 8 7 11 11 C 1.46494 * 120.00454 * 168.76043 * 10 9 8 12 12 C 1.50700 * 109.47353 * 89.99603 * 11 10 9 13 13 H 1.07998 * 119.99722 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00051 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00050 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00095 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47001 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47358 * 120.00221 * 16 14 12 19 19 H 1.48504 * 109.47206 * 240.00213 * 16 14 12 20 20 C 1.46502 * 119.99566 * 348.75856 * 10 9 8 21 21 C 1.54269 * 110.03288 * 231.69615 * 20 10 9 22 22 C 1.54878 * 104.20032 * 217.10715 * 21 20 10 23 23 C 1.54893 * 102.75020 * 37.94253 * 22 21 20 24 24 C 1.53876 * 110.03136 * 114.53532 * 20 10 9 25 25 N 1.31745 * 121.51771 * 0.27201 * 9 8 7 26 26 C 1.33844 * 121.24353 * 359.97438 * 25 9 8 27 27 C 1.37631 * 119.62691 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47133 * 300.00252 * 1 2 3 29 29 H 1.08998 * 109.47025 * 60.00079 * 1 2 3 30 30 H 1.08997 * 109.47443 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.59950 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.07235 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.83623 * 359.97318 * 7 6 5 34 34 H 1.08002 * 120.04965 * 179.78388 * 8 7 6 35 35 H 1.09000 * 109.47221 * 209.99716 * 11 10 9 36 36 H 1.09007 * 109.47328 * 329.99911 * 11 10 9 37 37 H 0.96997 * 119.99744 * 179.97438 * 15 14 12 38 38 H 1.08999 * 110.02229 * 353.13993 * 20 10 9 39 39 H 1.09007 * 110.48243 * 335.78815 * 21 20 10 40 40 H 1.09001 * 110.48479 * 98.42665 * 21 20 10 41 41 H 1.08995 * 110.75940 * 279.62957 * 22 21 20 42 42 H 1.08998 * 110.92108 * 156.32841 * 22 21 20 43 43 H 1.09000 * 110.48905 * 203.38335 * 23 22 21 44 44 H 1.08996 * 110.48519 * 80.73420 * 23 22 21 45 45 H 1.09001 * 110.02716 * 238.56327 * 24 20 10 46 46 H 1.08993 * 110.03464 * 359.94685 * 24 20 10 47 47 H 1.08009 * 120.18596 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2765 2.3780 -0.0005 5 6 1.8693 3.6023 0.0000 6 6 3.2699 3.7011 0.0005 7 6 3.9120 4.9559 0.0063 8 6 5.2743 4.9850 0.0021 9 6 5.9989 3.7849 0.0026 10 7 7.3850 3.8305 0.0036 11 6 8.1579 2.6109 0.2514 12 6 8.4330 1.9160 -1.0572 13 1 8.0689 2.3406 -1.9811 14 6 9.1495 0.7381 -1.0750 15 7 9.5924 0.2208 0.0502 16 14 9.4912 -0.1229 -2.6970 17 1 8.8899 0.6577 -3.8081 18 1 10.9581 -0.2269 -2.9030 19 1 8.8975 -1.4839 -2.6697 20 6 8.0764 5.0984 -0.2431 21 6 9.1259 4.9195 -1.3595 22 6 10.3115 5.8103 -0.9127 23 6 10.3346 5.6039 0.6223 24 6 8.8449 5.5335 1.0170 25 7 5.3935 2.6148 0.0017 26 6 4.0581 2.5241 0.0008 27 6 3.4206 1.2732 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.1988 2.3069 -0.0014 32 1 1.2638 4.4967 0.0000 33 1 3.3387 5.8712 0.0101 34 1 5.7950 5.9313 0.0029 35 1 9.1019 2.8701 0.7306 36 1 7.5899 1.9468 0.9030 37 1 10.0962 -0.6080 0.0377 38 1 7.3569 5.8669 -0.5256 39 1 9.4365 3.8768 -1.4275 40 1 8.7291 5.2634 -2.3147 41 1 10.1238 6.8553 -1.1591 42 1 11.2445 5.4706 -1.3621 43 1 10.8199 6.4474 1.1133 44 1 10.8404 4.6719 0.8743 45 1 8.4990 6.5136 1.3454 46 1 8.7028 4.8019 1.8123 47 1 4.0058 0.3654 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166533690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:30 Heat of formation + Delta-G solvation = 6.117072 kcal Electronic energy + Delta-G solvation = -27831.202546 eV Core-core repulsion = 24171.352082 eV Total energy + Delta-G solvation = -3659.850464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74872 -40.48944 -39.44970 -37.14265 -35.52317 -34.29540 -34.13874 -31.08366 -30.59789 -29.63508 -29.38362 -27.96150 -27.56529 -25.35698 -23.84732 -23.36429 -22.63953 -21.44908 -20.67803 -19.34800 -18.67811 -18.35693 -18.13933 -17.39083 -16.71644 -16.64768 -16.40731 -16.02844 -15.90417 -15.36134 -15.27490 -14.85652 -14.52411 -14.45504 -14.22596 -14.03952 -13.79402 -13.45544 -13.24109 -13.16421 -12.85864 -12.67882 -12.65358 -12.57303 -12.42303 -12.18881 -11.94596 -11.93165 -11.86374 -11.80565 -11.53766 -11.33855 -11.21608 -11.09006 -10.57680 -10.02944 -9.94460 -8.88766 -8.39376 -7.99306 -6.23723 -0.27996 0.17121 1.26793 1.31165 1.34328 1.44769 2.12853 2.22028 2.36877 2.48739 3.13250 3.36494 3.65707 3.77241 3.82885 3.90097 4.05316 4.05567 4.11097 4.18483 4.25482 4.42100 4.43253 4.44940 4.57578 4.62473 4.70879 4.73533 4.73931 4.80961 4.89944 4.99472 5.03039 5.05970 5.11107 5.15404 5.21522 5.26651 5.31741 5.32715 5.43567 5.47893 5.50034 5.64016 5.71116 5.72057 5.90111 6.17003 6.36080 6.49168 6.70169 6.88178 7.40696 7.63203 8.91373 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.004305 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.243517 B = 6502.185175 C = 8534.720467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.343 6.343 3 C 0.159 3.841 4 C -0.226 4.226 5 C -0.016 4.016 6 C -0.208 4.208 7 C -0.002 4.002 8 C -0.240 4.240 9 C 0.417 3.583 10 N -0.587 5.587 11 C 0.286 3.714 12 C -0.501 4.501 13 H 0.044 0.956 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.952 3.048 17 H -0.272 1.272 18 H -0.271 1.271 19 H -0.286 1.286 20 C 0.145 3.855 21 C -0.154 4.154 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.130 4.130 25 N -0.597 5.597 26 C 0.195 3.805 27 C -0.212 4.212 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.167 0.833 32 H 0.178 0.822 33 H 0.188 0.812 34 H 0.162 0.838 35 H 0.013 0.987 36 H -0.007 1.007 37 H 0.262 0.738 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.036 0.964 45 H 0.099 0.901 46 H 0.041 0.959 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.644 14.899 0.184 21.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.112 3.888 4 C -0.244 4.244 5 C -0.034 4.034 6 C -0.212 4.212 7 C -0.027 4.027 8 C -0.263 4.263 9 C 0.170 3.830 10 N -0.297 5.297 11 C 0.164 3.836 12 C -0.541 4.541 13 H 0.062 0.938 14 C -0.190 4.190 15 N -0.572 5.572 16 Si 0.777 3.223 17 H -0.197 1.197 18 H -0.196 1.196 19 H -0.212 1.212 20 C 0.042 3.958 21 C -0.192 4.192 22 C -0.147 4.147 23 C -0.157 4.157 24 C -0.169 4.169 25 N -0.319 5.319 26 C 0.071 3.929 27 C -0.233 4.233 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.185 0.815 32 H 0.195 0.805 33 H 0.205 0.795 34 H 0.179 0.821 35 H 0.031 0.969 36 H 0.011 0.989 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.055 0.945 45 H 0.117 0.883 46 H 0.060 0.940 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.809 13.785 0.259 20.234 hybrid contribution 0.244 -1.085 -0.628 1.277 sum -14.565 12.699 -0.369 19.328 Atomic orbital electron populations 1.23420 0.75818 1.05619 1.02862 1.86064 1.24173 1.27163 1.88267 1.18916 0.90842 0.85498 0.93583 1.21203 1.01386 0.91070 1.10787 1.21175 0.91705 0.98835 0.91734 1.18951 0.95787 0.93779 1.12711 1.21648 0.93365 0.97455 0.90219 1.21604 0.95745 0.97524 1.11390 1.19119 0.86022 0.89715 0.88189 1.47221 1.01191 1.09940 1.71299 1.18441 0.89083 0.81240 0.94818 1.21545 1.32021 1.07008 0.93477 0.93766 1.25674 0.96217 0.97738 0.99340 1.70054 1.38680 1.20931 1.27502 0.85604 0.78063 0.78257 0.80327 1.19658 1.19586 1.21245 1.21984 0.94372 0.84136 0.95344 1.22987 0.96391 1.02283 0.97531 1.22384 0.97234 1.00005 0.95082 1.22292 0.95639 1.01144 0.96582 1.22548 0.95897 1.01743 0.96672 1.67757 1.10369 1.27577 1.26150 1.18473 0.88140 0.93132 0.93153 1.19901 0.92495 0.96514 1.14435 0.90909 0.90984 0.86681 0.81518 0.80493 0.79481 0.82106 0.96898 0.98863 0.92891 0.87290 0.91214 0.91713 0.88916 0.91983 0.89164 0.94461 0.88271 0.93989 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.80 113.37 1.11 1.38 16 2 O -0.34 -10.08 10.47 -91.71 -0.96 -11.04 16 3 C 0.16 5.12 6.67 22.51 0.15 5.27 16 4 C -0.23 -5.19 8.94 22.14 0.20 -4.99 16 5 C -0.02 -0.36 9.75 22.28 0.22 -0.14 16 6 C -0.21 -6.45 5.75 -21.24 -0.12 -6.57 16 7 C 0.00 -0.06 9.87 22.48 0.22 0.16 16 8 C -0.24 -7.39 9.14 22.28 0.20 -7.18 16 9 C 0.42 18.05 7.32 133.62 0.98 19.03 16 10 N -0.59 -26.13 2.45 -680.00 -1.66 -27.79 16 11 C 0.29 15.87 4.25 85.63 0.36 16.24 16 12 C -0.50 -29.63 7.20 25.60 0.18 -29.45 16 13 H 0.04 2.67 7.63 -2.91 -0.02 2.65 16 14 C 0.01 0.49 5.46 84.65 0.46 0.95 16 15 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 16 Si 0.95 47.60 29.54 68.60 2.03 49.63 16 17 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 20 C 0.14 4.88 3.10 45.72 0.14 5.02 16 21 C -0.15 -5.39 6.30 31.67 0.20 -5.19 16 22 C -0.11 -2.95 6.91 31.88 0.22 -2.73 16 23 C -0.12 -3.35 6.83 31.67 0.22 -3.13 16 24 C -0.13 -3.85 6.05 31.32 0.19 -3.66 16 25 N -0.60 -29.75 9.19 -186.28 -1.71 -31.47 16 26 C 0.20 8.32 6.60 40.21 0.27 8.59 16 27 C -0.21 -8.93 9.94 22.65 0.23 -8.71 16 28 H 0.07 0.90 7.64 -2.39 -0.02 0.88 16 29 H 0.07 0.90 7.64 -2.39 -0.02 0.88 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.17 2.36 6.23 -2.91 -0.02 2.34 16 32 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 33 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.16 3.75 5.95 -2.91 -0.02 3.74 16 35 H 0.01 0.76 7.32 -2.39 -0.02 0.74 16 36 H -0.01 -0.43 7.55 -2.38 -0.02 -0.45 16 37 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.11 2.94 5.56 -2.39 -0.01 2.92 16 39 H 0.07 3.18 4.92 -2.38 -0.01 3.17 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.04 1.50 7.39 -2.39 -0.02 1.48 16 47 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -82.15 373.42 4.37 -77.78 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.97 Total: 16.16 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 5.43 Total: -15.11 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -3.09 Total: -117.42 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.96 Total: -11.04 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -82.15 4.37 -77.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.899 kcal (2) G-P(sol) polarization free energy of solvation -82.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds