Wall clock time and date at job start Tue Mar 31 2020 14:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35832 * 117.00043 * 2 1 4 4 C 1.39928 * 119.55604 * 0.02562 * 3 2 1 5 5 C 1.36000 * 121.04863 * 180.02562 * 4 3 2 6 6 C 1.40514 * 119.62545 * 0.02562 * 5 4 3 7 7 C 1.40269 * 121.85241 * 180.02562 * 6 5 4 8 8 N 1.31258 * 120.17748 * 180.02562 * 7 6 5 9 9 C 1.33127 * 122.68948 * 359.97438 * 8 7 6 10 10 N 1.39189 * 119.24262 * 179.97438 * 9 8 7 11 11 C 1.46501 * 119.99707 * 185.02320 * 10 9 8 12 12 C 1.50701 * 109.47416 * 89.99895 * 11 10 9 13 13 H 1.07998 * 119.99585 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00134 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00126 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00060 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.46974 * 89.99846 * 16 14 12 18 18 H 1.48500 * 109.47354 * 209.99970 * 16 14 12 19 19 H 1.48502 * 109.46924 * 329.99944 * 16 14 12 20 20 C 1.46499 * 120.00350 * 5.02066 * 10 9 8 21 21 C 1.54266 * 110.02961 * 57.16483 * 20 10 9 22 22 C 1.54885 * 104.19654 * 217.10459 * 21 20 10 23 23 C 1.54896 * 102.74659 * 37.94455 * 22 21 20 24 24 C 1.53880 * 110.02966 * 300.00229 * 20 10 9 25 25 C 1.37963 * 121.51180 * 0.02562 * 9 8 7 26 26 C 1.40515 * 118.53800 * 359.97438 * 25 9 8 27 27 C 1.36697 * 119.55659 * 180.30196 * 3 2 1 28 28 H 1.09000 * 109.47516 * 59.99550 * 1 2 3 29 29 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46794 * 299.99588 * 1 2 3 31 31 H 1.07994 * 119.47572 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.18911 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.91451 * 359.97438 * 7 6 5 34 34 H 1.09001 * 109.46894 * 209.99597 * 11 10 9 35 35 H 1.09004 * 109.47381 * 329.99874 * 11 10 9 36 36 H 0.96992 * 119.99725 * 179.97438 * 15 14 12 37 37 H 1.08996 * 110.01839 * 178.61199 * 20 10 9 38 38 H 1.09000 * 110.48822 * 335.79070 * 21 20 10 39 39 H 1.09001 * 110.48200 * 98.43135 * 21 20 10 40 40 H 1.08998 * 110.76331 * 279.63367 * 22 21 20 41 41 H 1.08998 * 110.91423 * 156.33221 * 22 21 20 42 42 H 1.08998 * 110.48571 * 203.37526 * 23 22 21 43 43 H 1.09003 * 110.48480 * 80.73660 * 23 22 21 44 44 H 1.08996 * 110.02813 * 238.56611 * 24 20 10 45 45 H 1.09001 * 110.03352 * 359.97438 * 24 20 10 46 46 H 1.08002 * 120.73759 * 179.97438 * 25 9 8 47 47 H 1.08001 * 120.27159 * 359.96639 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2745 2.3779 0.0005 5 6 1.8602 3.6053 0.0000 6 6 3.2617 3.7062 -0.0016 7 6 3.9145 4.9477 -0.0016 8 7 5.2259 5.0037 -0.0037 9 6 5.9920 3.9149 -0.0053 10 7 7.3765 4.0577 -0.0080 11 6 8.2346 2.8757 -0.1209 12 6 8.5133 2.5942 -1.5749 13 1 8.0936 3.2323 -2.3385 14 6 9.3049 1.5227 -1.9302 15 7 9.5485 1.2773 -3.1992 16 14 10.0314 0.4195 -0.6094 17 1 9.0894 -0.6911 -0.3190 18 1 11.3227 -0.1383 -1.0854 19 1 10.2595 1.2110 0.6262 20 6 7.9758 5.3900 0.1020 21 6 7.4881 6.0840 1.3906 22 6 7.3276 7.5700 0.9843 23 6 6.7684 7.4718 -0.4568 24 6 7.5181 6.2724 -1.0726 25 6 5.4450 2.6483 -0.0054 26 6 4.0456 2.5214 -0.0032 27 6 3.4113 1.2712 -0.0063 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.1972 2.3031 0.0005 32 1 1.2516 4.4974 0.0009 33 1 3.3366 5.8601 -0.0008 34 1 9.1743 3.0578 0.4005 35 1 7.7317 2.0177 0.3254 36 1 10.1057 0.5238 -3.4491 37 1 9.0628 5.3109 0.1081 38 1 6.5313 5.6698 1.7083 39 1 8.2304 5.9831 2.1824 40 1 8.2916 8.0786 0.9907 41 1 6.6200 8.0782 1.6394 42 1 6.9853 8.3837 -1.0131 43 1 5.6952 7.2817 -0.4375 44 1 8.3831 6.6222 -1.6360 45 1 6.8505 5.7092 -1.7247 46 1 6.0784 1.7735 -0.0071 47 1 3.9968 0.3637 -0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166533810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:38 Heat of formation + Delta-G solvation = 28.960447 kcal Electronic energy + Delta-G solvation = -28066.835436 eV Core-core repulsion = 24407.975535 eV Total energy + Delta-G solvation = -3658.859901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61335 -39.38966 -37.99933 -35.88716 -34.71550 -32.54150 -32.15962 -30.16665 -29.09416 -28.45547 -28.19994 -27.17409 -25.68557 -23.87170 -22.66454 -21.93126 -21.17460 -20.28510 -19.63744 -18.01245 -17.18303 -16.90670 -16.66908 -15.97898 -15.73850 -15.66388 -14.74271 -14.51473 -14.37809 -14.21289 -14.12809 -13.66136 -13.37572 -12.91262 -12.84449 -12.73177 -12.51506 -12.47611 -12.22754 -11.93745 -11.72087 -11.64565 -11.26578 -10.80547 -10.73189 -10.66363 -10.64319 -10.58649 -10.57762 -10.19610 -10.15231 -9.99414 -9.76344 -9.53412 -8.87338 -8.71066 -8.64488 -7.82027 -6.50673 -6.15005 -4.15310 0.83415 1.46032 2.40680 3.21738 3.28785 3.29940 3.31722 3.45013 3.75791 4.31657 4.59702 4.73033 4.85653 5.00431 5.02443 5.04376 5.08024 5.12903 5.16371 5.24894 5.33267 5.39861 5.40602 5.51113 5.72582 5.87229 5.94101 6.01227 6.04180 6.05900 6.13919 6.15743 6.20779 6.30511 6.33778 6.40728 6.45888 6.49006 6.57591 6.66575 6.71294 6.76483 6.86264 6.89425 7.02241 7.12937 7.48587 7.49988 7.71040 8.23668 8.40673 8.70580 8.93311 9.44328 10.97981 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.004970 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.169936 B = 5632.850727 C = 8153.385851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.144 3.856 4 C -0.230 4.230 5 C -0.027 4.027 6 C -0.200 4.200 7 C 0.186 3.814 8 N -0.523 5.523 9 C 0.416 3.584 10 N -0.577 5.577 11 C 0.221 3.779 12 C -0.533 4.533 13 H 0.077 0.923 14 C 0.075 3.925 15 N -0.893 5.893 16 Si 0.870 3.130 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.161 3.839 21 C -0.128 4.128 22 C -0.115 4.115 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.251 4.251 26 C 0.061 3.939 27 C -0.173 4.173 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.154 0.846 34 H 0.032 0.968 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.140 0.860 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.106 6.493 8.972 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.098 3.902 4 C -0.249 4.249 5 C -0.047 4.047 6 C -0.205 4.205 7 C 0.012 3.988 8 N -0.237 5.237 9 C 0.190 3.810 10 N -0.282 5.282 11 C 0.100 3.900 12 C -0.572 4.572 13 H 0.096 0.904 14 C -0.128 4.128 15 N -0.531 5.531 16 Si 0.696 3.304 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.190 1.190 20 C 0.057 3.943 21 C -0.167 4.167 22 C -0.153 4.153 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.278 4.278 26 C 0.056 3.944 27 C -0.192 4.192 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.171 0.829 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.157 0.843 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.057 6.916 8.838 17.987 hybrid contribution -0.167 -1.525 0.346 1.573 sum -14.224 5.390 9.184 17.769 Atomic orbital electron populations 1.23003 0.78913 1.03559 1.01158 1.86084 1.21014 1.27409 1.88817 1.18687 0.92061 0.83794 0.95649 1.20795 0.99565 0.92488 1.12061 1.20674 0.93171 0.96913 0.93972 1.18713 0.94074 0.94653 1.13025 1.22728 0.89509 0.95588 0.90929 1.67118 1.06265 1.31706 1.18571 1.18062 0.85271 0.88367 0.89313 1.47024 1.00710 1.07225 1.73265 1.19797 0.89151 0.82970 0.98070 1.21410 1.31440 1.13472 0.90873 0.90445 1.24864 0.95736 0.97008 0.95184 1.69893 1.38065 1.29382 1.15732 0.86954 0.79311 0.81624 0.82497 1.19847 1.20915 1.18968 1.21481 0.96887 0.81983 0.93990 1.22740 1.01532 0.95423 0.97003 1.22336 0.99885 0.96000 0.97099 1.22254 1.01217 0.96627 0.94792 1.22350 0.99449 0.96245 0.97624 1.21265 0.93379 0.97793 1.15350 1.17500 0.92729 0.91631 0.92534 1.19999 0.91368 0.97700 1.10128 0.92771 0.88593 0.92840 0.85940 0.85550 0.82857 0.94982 0.95225 0.92476 0.89906 0.90461 0.92834 0.92449 0.92385 0.93381 0.90426 0.92699 0.91109 0.84251 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.80 101.05 0.99 1.24 16 2 O -0.32 -4.36 10.47 -19.21 -0.20 -4.56 16 3 C 0.14 2.13 6.64 -39.51 -0.26 1.87 16 4 C -0.23 -2.85 8.93 -39.75 -0.36 -3.20 16 5 C -0.03 -0.33 9.79 -39.53 -0.39 -0.72 16 6 C -0.20 -3.06 5.74 -106.81 -0.61 -3.67 16 7 C 0.19 2.70 11.02 -17.03 -0.19 2.52 16 8 N -0.52 -8.97 4.86 -12.11 -0.06 -9.02 16 9 C 0.42 8.25 6.21 -154.65 -0.96 7.29 16 10 N -0.58 -11.94 2.50 -166.44 -0.42 -12.35 16 11 C 0.22 5.12 4.04 -5.19 -0.02 5.10 16 12 C -0.53 -14.64 9.94 -34.44 -0.34 -14.98 16 13 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 14 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 15 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 16 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 20 C 0.16 2.91 3.36 -66.81 -0.22 2.69 16 21 C -0.13 -1.97 6.05 -25.07 -0.15 -2.12 16 22 C -0.12 -1.51 6.91 -24.74 -0.17 -1.68 16 23 C -0.11 -1.57 6.34 -25.07 -0.16 -1.73 16 24 C -0.12 -2.05 5.75 -25.61 -0.15 -2.20 16 25 C -0.25 -5.05 9.06 -38.82 -0.35 -5.40 16 26 C 0.06 1.10 5.74 -106.84 -0.61 0.49 16 27 C -0.17 -2.92 9.72 -39.41 -0.38 -3.31 16 28 H 0.05 0.41 7.63 -51.93 -0.40 0.02 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.39 7.63 -51.93 -0.40 0.00 16 31 H 0.12 1.15 6.21 -52.49 -0.33 0.82 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.03 0.73 6.98 -51.93 -0.36 0.37 16 35 H 0.03 0.68 5.38 -51.93 -0.28 0.41 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.08 1.52 7.82 -51.93 -0.41 1.12 16 38 H 0.08 1.28 6.12 -51.93 -0.32 0.96 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.11 6.87 -51.93 -0.36 0.76 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.43 7.01 -51.93 -0.36 1.06 16 46 H 0.14 2.98 5.97 -52.49 -0.31 2.67 16 47 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -31.10 367.53 -10.39 -41.49 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.91 Total: 4.84 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -4.44 Total: -15.80 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.30 Total: -47.44 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.20 Total: -4.56 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.10 -10.39 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.449 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds