Wall clock time and date at job start Tue Mar 31 2020 14:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35832 * 117.00043 * 2 1 4 4 C 1.39928 * 119.55604 * 0.02562 * 3 2 1 5 5 C 1.36000 * 121.04863 * 180.02562 * 4 3 2 6 6 C 1.40514 * 119.62545 * 0.02562 * 5 4 3 7 7 C 1.40269 * 121.85241 * 180.02562 * 6 5 4 8 8 N 1.31258 * 120.17748 * 180.02562 * 7 6 5 9 9 C 1.33127 * 122.68948 * 359.97438 * 8 7 6 10 10 N 1.39189 * 119.24262 * 179.97438 * 9 8 7 11 11 C 1.46501 * 119.99707 * 185.02320 * 10 9 8 12 12 C 1.50701 * 109.47416 * 89.99895 * 11 10 9 13 13 H 1.07998 * 119.99585 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00134 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00126 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00060 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.46974 * 89.99846 * 16 14 12 18 18 H 1.48500 * 109.47354 * 209.99970 * 16 14 12 19 19 H 1.48502 * 109.46924 * 329.99944 * 16 14 12 20 20 C 1.46499 * 120.00350 * 5.02066 * 10 9 8 21 21 C 1.54266 * 110.02961 * 57.16483 * 20 10 9 22 22 C 1.54885 * 104.19654 * 217.10459 * 21 20 10 23 23 C 1.54896 * 102.74659 * 37.94455 * 22 21 20 24 24 C 1.53880 * 110.02966 * 300.00229 * 20 10 9 25 25 C 1.37963 * 121.51180 * 0.02562 * 9 8 7 26 26 C 1.40515 * 118.53800 * 359.97438 * 25 9 8 27 27 C 1.36697 * 119.55659 * 180.30196 * 3 2 1 28 28 H 1.09000 * 109.47516 * 59.99550 * 1 2 3 29 29 H 1.09001 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46794 * 299.99588 * 1 2 3 31 31 H 1.07994 * 119.47572 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.18911 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.91451 * 359.97438 * 7 6 5 34 34 H 1.09001 * 109.46894 * 209.99597 * 11 10 9 35 35 H 1.09004 * 109.47381 * 329.99874 * 11 10 9 36 36 H 0.96992 * 119.99725 * 179.97438 * 15 14 12 37 37 H 1.08996 * 110.01839 * 178.61199 * 20 10 9 38 38 H 1.09000 * 110.48822 * 335.79070 * 21 20 10 39 39 H 1.09001 * 110.48200 * 98.43135 * 21 20 10 40 40 H 1.08998 * 110.76331 * 279.63367 * 22 21 20 41 41 H 1.08998 * 110.91423 * 156.33221 * 22 21 20 42 42 H 1.08998 * 110.48571 * 203.37526 * 23 22 21 43 43 H 1.09003 * 110.48480 * 80.73660 * 23 22 21 44 44 H 1.08996 * 110.02813 * 238.56611 * 24 20 10 45 45 H 1.09001 * 110.03352 * 359.97438 * 24 20 10 46 46 H 1.08002 * 120.73759 * 179.97438 * 25 9 8 47 47 H 1.08001 * 120.27159 * 359.96639 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2745 2.3779 0.0005 5 6 1.8602 3.6053 0.0000 6 6 3.2617 3.7062 -0.0016 7 6 3.9145 4.9477 -0.0016 8 7 5.2259 5.0037 -0.0037 9 6 5.9920 3.9149 -0.0053 10 7 7.3765 4.0577 -0.0080 11 6 8.2346 2.8757 -0.1209 12 6 8.5133 2.5942 -1.5749 13 1 8.0936 3.2323 -2.3385 14 6 9.3049 1.5227 -1.9302 15 7 9.5485 1.2773 -3.1992 16 14 10.0314 0.4195 -0.6094 17 1 9.0894 -0.6911 -0.3190 18 1 11.3227 -0.1383 -1.0854 19 1 10.2595 1.2110 0.6262 20 6 7.9758 5.3900 0.1020 21 6 7.4881 6.0840 1.3906 22 6 7.3276 7.5700 0.9843 23 6 6.7684 7.4718 -0.4568 24 6 7.5181 6.2724 -1.0726 25 6 5.4450 2.6483 -0.0054 26 6 4.0456 2.5214 -0.0032 27 6 3.4113 1.2712 -0.0063 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.1972 2.3031 0.0005 32 1 1.2516 4.4974 0.0009 33 1 3.3366 5.8601 -0.0008 34 1 9.1743 3.0578 0.4005 35 1 7.7317 2.0177 0.3254 36 1 10.1057 0.5238 -3.4491 37 1 9.0628 5.3109 0.1081 38 1 6.5313 5.6698 1.7083 39 1 8.2304 5.9831 2.1824 40 1 8.2916 8.0786 0.9907 41 1 6.6200 8.0782 1.6394 42 1 6.9853 8.3837 -1.0131 43 1 5.6952 7.2817 -0.4375 44 1 8.3831 6.6222 -1.6360 45 1 6.8505 5.7092 -1.7247 46 1 6.0784 1.7735 -0.0071 47 1 3.9968 0.3637 -0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166533810.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:37 Heat of formation + Delta-G solvation = 12.446002 kcal Electronic energy + Delta-G solvation = -28067.551556 eV Core-core repulsion = 24407.975535 eV Total energy + Delta-G solvation = -3659.576021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84382 -40.57644 -39.23287 -37.08513 -36.23806 -34.51727 -33.44104 -31.40653 -30.45841 -30.00592 -29.45436 -28.14094 -27.08981 -25.28680 -24.06871 -23.16654 -22.73666 -21.42122 -20.93673 -19.16574 -19.03335 -18.44352 -17.93094 -17.32323 -16.96125 -16.65385 -16.29941 -15.89045 -15.74932 -15.45830 -15.42902 -15.06995 -14.61651 -14.51518 -14.09921 -14.03888 -13.82752 -13.66194 -13.60814 -13.44685 -13.09934 -12.80879 -12.68850 -12.47203 -12.18090 -11.98332 -11.88149 -11.80760 -11.76660 -11.71733 -11.68195 -11.43861 -11.23592 -11.05188 -10.85377 -10.17298 -10.01278 -9.04408 -8.36654 -7.98171 -6.41824 -0.33622 0.22779 1.16974 1.30099 1.31295 1.41267 2.17859 2.26563 2.28053 2.41735 2.96928 3.31551 3.60834 3.77329 3.83554 3.90989 4.03504 4.04424 4.16978 4.18709 4.34453 4.39650 4.44318 4.52726 4.58473 4.64164 4.68998 4.70100 4.75611 4.81723 4.83527 4.86241 4.96403 5.01784 5.07569 5.14372 5.16803 5.23721 5.32423 5.33702 5.38482 5.42990 5.48123 5.49650 5.71126 5.81162 5.85658 6.01825 6.38207 6.46761 6.61374 6.75589 7.18868 7.35484 8.80864 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.004970 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.169936 B = 5632.850727 C = 8153.385851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.342 6.342 3 C 0.159 3.841 4 C -0.229 4.229 5 C -0.008 4.008 6 C -0.212 4.212 7 C 0.201 3.799 8 N -0.530 5.530 9 C 0.404 3.596 10 N -0.592 5.592 11 C 0.233 3.767 12 C -0.532 4.532 13 H 0.024 0.976 14 C 0.016 3.984 15 N -0.944 5.944 16 Si 0.942 3.058 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.242 1.242 20 C 0.151 3.849 21 C -0.119 4.119 22 C -0.104 4.104 23 C -0.101 4.101 24 C -0.116 4.116 25 C -0.295 4.295 26 C 0.049 3.951 27 C -0.221 4.221 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.165 0.835 32 H 0.180 0.820 33 H 0.208 0.792 34 H 0.040 0.960 35 H 0.030 0.970 36 H 0.268 0.732 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.033 0.967 46 H 0.106 0.894 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.605 8.671 11.313 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.256 6.256 3 C 0.112 3.888 4 C -0.247 4.247 5 C -0.027 4.027 6 C -0.216 4.216 7 C 0.027 3.973 8 N -0.244 5.244 9 C 0.180 3.820 10 N -0.298 5.298 11 C 0.111 3.889 12 C -0.571 4.571 13 H 0.042 0.958 14 C -0.183 4.183 15 N -0.584 5.584 16 Si 0.765 3.235 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.165 1.165 20 C 0.048 3.952 21 C -0.157 4.157 22 C -0.141 4.141 23 C -0.139 4.139 24 C -0.155 4.155 25 C -0.322 4.322 26 C 0.044 3.956 27 C -0.240 4.240 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.092 0.908 31 H 0.182 0.818 32 H 0.198 0.802 33 H 0.225 0.775 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.124 0.876 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.596 9.109 11.195 22.758 hybrid contribution 0.599 -2.257 -0.492 2.387 sum -16.997 6.851 10.703 21.223 Atomic orbital electron populations 1.23412 0.75960 1.05607 1.02799 1.86072 1.24090 1.27224 1.88193 1.18877 0.91440 0.85383 0.93072 1.21236 1.01441 0.91322 1.10746 1.21214 0.91716 0.98894 0.90908 1.19062 0.95753 0.93744 1.13050 1.23650 0.88788 0.97243 0.87617 1.67204 1.07381 1.30091 1.19708 1.18145 0.85135 0.89039 0.89676 1.46919 1.01230 1.07133 1.74561 1.19445 0.89974 0.84595 0.94922 1.21557 1.30744 1.12590 0.92221 0.95769 1.25808 0.96172 0.98627 0.97654 1.70057 1.39526 1.30525 1.18310 0.85794 0.78342 0.79399 0.79984 1.19405 1.20202 1.16492 1.21704 0.96211 0.81279 0.96037 1.22646 1.01009 0.96659 0.95430 1.22311 1.01172 0.94332 0.96329 1.22194 1.00754 0.95387 0.95516 1.22297 0.98839 0.97320 0.97010 1.21140 0.94691 0.97046 1.19293 1.17670 0.92053 0.93343 0.92548 1.19947 0.92940 0.96911 1.14227 0.91240 0.86672 0.90848 0.81806 0.80247 0.77525 0.94257 0.95247 0.92290 0.91241 0.91471 0.91931 0.91175 0.89988 0.91575 0.90230 0.93417 0.94794 0.87616 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.80 113.37 1.11 1.33 16 2 O -0.34 -8.90 10.47 -91.66 -0.96 -9.86 16 3 C 0.16 4.54 6.64 22.32 0.15 4.69 16 4 C -0.23 -4.72 8.93 22.16 0.20 -4.52 16 5 C -0.01 -0.16 9.79 22.30 0.22 0.06 16 6 C -0.21 -6.07 5.74 -21.28 -0.12 -6.20 16 7 C 0.20 5.29 11.02 85.27 0.94 6.23 16 8 N -0.53 -18.05 4.86 -192.22 -0.93 -18.98 16 9 C 0.40 16.97 6.21 132.50 0.82 17.80 16 10 N -0.59 -26.13 2.50 -680.51 -1.70 -27.84 16 11 C 0.23 11.55 4.04 85.63 0.35 11.90 16 12 C -0.53 -31.64 9.94 25.60 0.25 -31.39 16 13 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 14 C 0.02 0.93 5.47 84.65 0.46 1.39 16 15 N -0.94 -60.29 13.96 21.45 0.30 -59.99 16 16 Si 0.94 44.41 27.47 68.60 1.88 46.30 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.24 -10.40 6.54 99.48 0.65 -9.74 16 20 C 0.15 5.69 3.36 45.72 0.15 5.84 16 21 C -0.12 -3.53 6.05 31.67 0.19 -3.34 16 22 C -0.10 -2.41 6.91 31.89 0.22 -2.19 16 23 C -0.10 -2.66 6.34 31.67 0.20 -2.46 16 24 C -0.12 -4.17 5.75 31.32 0.18 -3.99 16 25 C -0.29 -12.96 9.06 22.76 0.21 -12.75 16 26 C 0.05 1.84 5.74 -21.30 -0.12 1.72 16 27 C -0.22 -7.94 9.72 22.38 0.22 -7.73 16 28 H 0.07 0.77 7.63 -2.39 -0.02 0.76 16 29 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 0.75 7.63 -2.38 -0.02 0.73 16 31 H 0.16 2.04 6.21 -2.91 -0.02 2.03 16 32 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.21 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.04 1.87 6.98 -2.39 -0.02 1.85 16 35 H 0.03 1.47 5.38 -2.39 -0.01 1.45 16 36 H 0.27 15.92 8.31 -92.71 -0.77 15.14 16 37 H 0.07 2.70 7.82 -2.39 -0.02 2.68 16 38 H 0.07 2.16 6.12 -2.39 -0.01 2.14 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 2.08 6.87 -2.39 -0.02 2.06 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.03 1.45 7.01 -2.39 -0.02 1.43 16 46 H 0.11 5.16 5.97 -2.91 -0.02 5.14 16 47 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -77.51 367.53 5.13 -72.38 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.92 Total: 21.59 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 5.63 Total: -23.60 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -2.34 Total: -106.81 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.96 Total: -9.86 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.30 kcal Total: -77.51 5.13 -72.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533810.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.829 kcal (2) G-P(sol) polarization free energy of solvation -77.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds