Wall clock time and date at job start Tue Mar 31 2020 14:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35602 * 116.99899 * 2 1 4 4 C 1.36962 * 120.91161 * 5.01192 * 3 2 1 5 5 C 1.39822 * 119.81962 * 179.97438 * 4 3 2 6 6 N 1.38721 * 119.18024 * 179.71877 * 5 4 3 7 7 C 1.46506 * 119.99897 * 84.32568 * 6 5 4 8 8 C 1.50699 * 109.46989 * 89.99957 * 7 6 5 9 9 H 1.08003 * 119.99938 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00287 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99918 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00541 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47051 * 89.99660 * 12 10 8 14 14 H 1.48496 * 109.47182 * 210.00039 * 12 10 8 15 15 H 1.48505 * 109.46712 * 329.99828 * 12 10 8 16 16 C 1.46501 * 120.00367 * 264.32566 * 6 5 4 17 17 C 1.54264 * 110.02974 * 52.44735 * 16 6 5 18 18 C 1.54894 * 104.19544 * 217.10754 * 17 16 6 19 19 C 1.54892 * 102.74813 * 37.94005 * 18 17 16 20 20 C 1.53874 * 110.03239 * 295.28131 * 16 6 5 21 21 N 1.31873 * 121.63670 * 0.02562 * 5 4 3 22 22 C 1.33879 * 121.37707 * 359.97438 * 21 5 4 23 23 C 1.40498 * 120.95973 * 179.97438 * 22 21 5 24 24 C 1.36174 * 119.75732 * 179.97438 * 23 22 21 25 25 C 1.39238 * 121.00202 * 0.02562 * 24 23 22 26 26 C 1.36276 * 120.82806 * 359.97211 * 25 24 23 27 27 C 1.40176 * 119.64716 * 0.04303 * 26 25 24 28 28 H 1.08999 * 109.46769 * 184.61905 * 1 2 3 29 29 H 1.09002 * 109.47334 * 304.61330 * 1 2 3 30 30 H 1.08995 * 109.47177 * 64.61816 * 1 2 3 31 31 H 1.07993 * 120.08789 * 359.95973 * 4 3 2 32 32 H 1.08997 * 109.47142 * 209.99593 * 7 6 5 33 33 H 1.09001 * 109.47071 * 330.00237 * 7 6 5 34 34 H 0.97001 * 120.00671 * 180.02562 * 11 10 8 35 35 H 1.08997 * 110.01765 * 173.88861 * 16 6 5 36 36 H 1.08995 * 110.48700 * 335.78307 * 17 16 6 37 37 H 1.08999 * 110.49160 * 98.43052 * 17 16 6 38 38 H 1.09004 * 110.75287 * 279.62864 * 18 17 16 39 39 H 1.09001 * 110.91559 * 156.32920 * 18 17 16 40 40 H 1.09002 * 110.48443 * 203.37919 * 19 18 17 41 41 H 1.09000 * 110.59855 * 80.79357 * 19 18 17 42 42 H 1.08998 * 110.03472 * 238.57309 * 20 16 6 43 43 H 1.09007 * 110.03306 * 359.94785 * 20 16 6 44 44 H 1.08000 * 120.12529 * 359.97438 * 23 22 21 45 45 H 1.08004 * 119.49889 * 179.97438 * 24 23 22 46 46 H 1.08000 * 119.58289 * 180.02562 * 25 24 23 47 47 H 1.07994 * 120.17923 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.3210 2.3666 0.1027 5 6 1.9793 3.6001 0.1009 6 7 1.2329 4.7652 0.1996 7 6 0.8258 5.2651 1.5152 8 6 1.8838 6.1967 2.0480 9 1 2.7705 6.3967 1.4648 10 6 1.7198 6.7936 3.2800 11 7 0.6398 6.5503 3.9900 12 14 3.0308 7.9489 3.9401 13 1 2.7322 9.3368 3.5048 14 1 3.0434 7.8872 5.4238 15 1 4.3593 7.5408 3.4165 16 6 0.8518 5.4959 -1.0116 17 6 0.1620 4.5423 -2.0089 18 6 0.6594 5.0188 -3.3962 19 6 2.1366 5.3937 -3.1194 20 6 2.1072 6.0372 -1.7177 21 7 3.2917 3.6836 0.0017 22 6 4.0541 2.5880 -0.1015 23 6 5.4515 2.6872 -0.2073 24 6 6.2035 1.5566 -0.3105 25 6 5.6088 0.2976 -0.3136 26 6 4.2564 0.1638 -0.2127 27 6 3.4526 1.3071 -0.1053 28 1 -0.3633 -1.0243 0.0828 29 1 -0.3634 0.5838 0.8458 30 1 -0.3633 0.4405 -0.9284 31 1 0.2449 2.3272 0.1845 32 1 -0.1183 5.8020 1.4237 33 1 0.7020 4.4263 2.2002 34 1 0.5241 6.9705 4.8566 35 1 0.1831 6.3180 -0.7565 36 1 0.4690 3.5125 -1.8266 37 1 -0.9218 4.6363 -1.9393 38 1 0.0959 5.8900 -3.7303 39 1 0.5958 4.2149 -4.1296 40 1 2.4938 6.1091 -3.8602 41 1 2.7644 4.5027 -3.1170 42 1 2.0475 7.1220 -1.8060 43 1 3.0001 5.7571 -1.1587 44 1 5.9277 3.6565 -0.2067 45 1 7.2774 1.6377 -0.3920 46 1 6.2273 -0.5840 -0.3962 47 1 3.8062 -0.8179 -0.2166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166533988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:15 Heat of formation + Delta-G solvation = 28.297817 kcal Electronic energy + Delta-G solvation = -28658.082829 eV Core-core repulsion = 24999.194195 eV Total energy + Delta-G solvation = -3658.888635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.83025 -38.64105 -38.34974 -36.35053 -34.10120 -32.29303 -32.27817 -29.87512 -29.34840 -28.21250 -27.79594 -27.48619 -25.84272 -23.30779 -23.15074 -21.65480 -21.41494 -20.26295 -19.55323 -17.69712 -17.50603 -17.18099 -16.26313 -15.90391 -15.54617 -15.45675 -14.95556 -14.73858 -14.52247 -13.97400 -13.91159 -13.84611 -13.38124 -13.28573 -13.00072 -12.85727 -12.38049 -11.90741 -11.67559 -11.63943 -11.34883 -11.34356 -11.17704 -11.06370 -10.94958 -10.77120 -10.70124 -10.61658 -10.41749 -10.30187 -10.03017 -9.86833 -9.46645 -9.44819 -8.95164 -8.38393 -8.32926 -7.66055 -6.95772 -5.92071 -3.97767 0.79685 1.15023 2.33000 3.11423 3.25254 3.35709 3.41839 3.48263 4.05234 4.46930 4.52563 4.79639 4.93776 5.01468 5.05813 5.06681 5.06960 5.11988 5.14441 5.28609 5.37989 5.39546 5.47158 5.53695 5.63111 5.70765 5.87171 5.92008 5.96361 6.01247 6.07537 6.08635 6.18886 6.20505 6.21910 6.32679 6.45807 6.54824 6.60028 6.64496 6.67009 6.77489 7.02171 7.08156 7.21835 7.33005 7.43970 7.99604 8.34397 8.47575 8.54072 8.82594 9.15269 9.68375 11.12077 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.009126 B = 0.005090 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.327115 B = 5499.405771 C = 6255.121789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.177 3.823 4 C -0.268 4.268 5 C 0.480 3.520 6 N -0.657 5.657 7 C 0.276 3.724 8 C -0.518 4.518 9 H 0.065 0.935 10 C 0.056 3.944 11 N -0.903 5.903 12 Si 0.891 3.109 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.274 1.274 16 C 0.181 3.819 17 C -0.142 4.142 18 C -0.122 4.122 19 C -0.120 4.120 20 C -0.145 4.145 21 N -0.501 5.501 22 C 0.174 3.826 23 C -0.102 4.102 24 C -0.097 4.097 25 C -0.146 4.146 26 C -0.072 4.072 27 C -0.135 4.135 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.138 0.862 32 H 0.029 0.971 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.134 0.866 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -12.118 -12.647 17.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.124 3.876 4 C -0.293 4.293 5 C 0.239 3.761 6 N -0.384 5.384 7 C 0.157 3.843 8 C -0.557 4.557 9 H 0.083 0.917 10 C -0.144 4.144 11 N -0.543 5.543 12 Si 0.720 3.280 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.199 1.199 16 C 0.076 3.924 17 C -0.181 4.181 18 C -0.160 4.160 19 C -0.158 4.158 20 C -0.184 4.184 21 N -0.216 5.216 22 C 0.051 3.949 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.164 4.164 26 C -0.091 4.091 27 C -0.138 4.138 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.046 0.954 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.152 0.848 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.269 -11.468 -12.430 17.063 hybrid contribution 0.032 0.056 0.671 0.674 sum 2.301 -11.411 -11.759 16.547 Atomic orbital electron populations 1.23124 0.77804 1.03925 1.02095 1.85929 1.21810 1.26637 1.87892 1.18865 0.91235 0.84447 0.93073 1.22243 1.01803 0.92766 1.12457 1.17859 0.85930 0.86628 0.85692 1.46338 1.60579 1.25340 1.06150 1.18983 0.94722 0.93531 0.77071 1.21824 1.05798 1.25789 1.02326 0.91720 1.24970 0.95645 0.97006 0.96825 1.69933 1.26948 1.44496 1.12963 0.86594 0.82475 0.81167 0.77801 1.20786 1.21456 1.19878 1.21171 0.94254 0.92787 0.84194 1.22917 0.99895 1.00423 0.94894 1.22434 0.96586 1.00203 0.96775 1.22296 0.96056 0.99979 0.97494 1.22799 1.01060 0.99455 0.95104 1.68374 1.06818 1.30073 1.16308 1.18682 0.94129 0.86918 0.95217 1.20764 0.91174 0.99368 1.00780 1.20825 0.99852 0.92249 0.98795 1.20733 0.94714 0.97430 1.03503 1.20802 0.93596 0.97372 0.97334 1.18267 0.90465 0.95577 1.09443 0.88137 0.91954 0.92382 0.84455 0.95354 0.96421 0.93043 0.89812 0.91552 0.91911 0.91759 0.92510 0.92596 0.92564 0.92405 0.89064 0.84828 0.85853 0.86148 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.90 101.05 1.00 1.26 16 2 O -0.31 -4.32 9.80 -18.50 -0.18 -4.50 16 3 C 0.18 2.91 6.70 -38.79 -0.26 2.65 16 4 C -0.27 -4.73 7.45 -39.45 -0.29 -5.02 16 5 C 0.48 9.76 4.95 -155.48 -0.77 9.00 16 6 N -0.66 -13.92 2.34 -166.36 -0.39 -14.31 16 7 C 0.28 7.03 5.43 -5.19 -0.03 7.00 16 8 C -0.52 -14.58 9.39 -34.44 -0.32 -14.90 16 9 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 12 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 16 C 0.18 3.30 3.43 -66.81 -0.23 3.07 16 17 C -0.14 -2.13 6.39 -25.07 -0.16 -2.29 16 18 C -0.12 -1.61 6.91 -24.73 -0.17 -1.78 16 19 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 20 C -0.15 -2.55 6.32 -25.61 -0.16 -2.71 16 21 N -0.50 -10.43 9.08 -10.30 -0.09 -10.53 16 22 C 0.17 3.20 6.60 -84.88 -0.56 2.64 16 23 C -0.10 -1.60 9.98 -39.47 -0.39 -1.99 16 24 C -0.10 -1.23 9.94 -39.95 -0.40 -1.63 16 25 C -0.15 -1.78 9.96 -39.92 -0.40 -2.17 16 26 C -0.07 -1.01 9.58 -39.56 -0.38 -1.39 16 27 C -0.13 -2.26 5.75 -106.67 -0.61 -2.88 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.65 7.19 -51.93 -0.37 0.28 16 30 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.14 2.20 6.34 -52.49 -0.33 1.86 16 32 H 0.03 0.75 7.89 -51.93 -0.41 0.34 16 33 H 0.02 0.49 8.05 -51.93 -0.42 0.07 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.08 1.57 7.80 -51.93 -0.40 1.16 16 36 H 0.07 1.04 5.63 -51.93 -0.29 0.75 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.87 6.50 -51.93 -0.34 1.53 16 44 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 45 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 46 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 47 H 0.13 1.53 7.66 -52.49 -0.40 1.13 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -31.41 378.77 -10.81 -42.22 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.16 Total: 1.73 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -4.41 Total: -11.57 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.25 Total: -50.80 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.18 Total: -4.50 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.41 -10.81 -42.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.519 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds