Wall clock time and date at job start Tue Mar 31 2020 14:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35602 * 116.99899 * 2 1 4 4 C 1.36962 * 120.91161 * 5.01192 * 3 2 1 5 5 C 1.39822 * 119.81962 * 179.97438 * 4 3 2 6 6 N 1.38721 * 119.18024 * 179.71877 * 5 4 3 7 7 C 1.46506 * 119.99897 * 84.32568 * 6 5 4 8 8 C 1.50699 * 109.46989 * 89.99957 * 7 6 5 9 9 H 1.08003 * 119.99938 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00287 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99918 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00541 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47051 * 89.99660 * 12 10 8 14 14 H 1.48496 * 109.47182 * 210.00039 * 12 10 8 15 15 H 1.48505 * 109.46712 * 329.99828 * 12 10 8 16 16 C 1.46501 * 120.00367 * 264.32566 * 6 5 4 17 17 C 1.54264 * 110.02974 * 52.44735 * 16 6 5 18 18 C 1.54894 * 104.19544 * 217.10754 * 17 16 6 19 19 C 1.54892 * 102.74813 * 37.94005 * 18 17 16 20 20 C 1.53874 * 110.03239 * 295.28131 * 16 6 5 21 21 N 1.31873 * 121.63670 * 0.02562 * 5 4 3 22 22 C 1.33879 * 121.37707 * 359.97438 * 21 5 4 23 23 C 1.40498 * 120.95973 * 179.97438 * 22 21 5 24 24 C 1.36174 * 119.75732 * 179.97438 * 23 22 21 25 25 C 1.39238 * 121.00202 * 0.02562 * 24 23 22 26 26 C 1.36276 * 120.82806 * 359.97211 * 25 24 23 27 27 C 1.40176 * 119.64716 * 0.04303 * 26 25 24 28 28 H 1.08999 * 109.46769 * 184.61905 * 1 2 3 29 29 H 1.09002 * 109.47334 * 304.61330 * 1 2 3 30 30 H 1.08995 * 109.47177 * 64.61816 * 1 2 3 31 31 H 1.07993 * 120.08789 * 359.95973 * 4 3 2 32 32 H 1.08997 * 109.47142 * 209.99593 * 7 6 5 33 33 H 1.09001 * 109.47071 * 330.00237 * 7 6 5 34 34 H 0.97001 * 120.00671 * 180.02562 * 11 10 8 35 35 H 1.08997 * 110.01765 * 173.88861 * 16 6 5 36 36 H 1.08995 * 110.48700 * 335.78307 * 17 16 6 37 37 H 1.08999 * 110.49160 * 98.43052 * 17 16 6 38 38 H 1.09004 * 110.75287 * 279.62864 * 18 17 16 39 39 H 1.09001 * 110.91559 * 156.32920 * 18 17 16 40 40 H 1.09002 * 110.48443 * 203.37919 * 19 18 17 41 41 H 1.09000 * 110.59855 * 80.79357 * 19 18 17 42 42 H 1.08998 * 110.03472 * 238.57309 * 20 16 6 43 43 H 1.09007 * 110.03306 * 359.94785 * 20 16 6 44 44 H 1.08000 * 120.12529 * 359.97438 * 23 22 21 45 45 H 1.08004 * 119.49889 * 179.97438 * 24 23 22 46 46 H 1.08000 * 119.58289 * 180.02562 * 25 24 23 47 47 H 1.07994 * 120.17923 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.3210 2.3666 0.1027 5 6 1.9793 3.6001 0.1009 6 7 1.2329 4.7652 0.1996 7 6 0.8258 5.2651 1.5152 8 6 1.8838 6.1967 2.0480 9 1 2.7705 6.3967 1.4648 10 6 1.7198 6.7936 3.2800 11 7 0.6398 6.5503 3.9900 12 14 3.0308 7.9489 3.9401 13 1 2.7322 9.3368 3.5048 14 1 3.0434 7.8872 5.4238 15 1 4.3593 7.5408 3.4165 16 6 0.8518 5.4959 -1.0116 17 6 0.1620 4.5423 -2.0089 18 6 0.6594 5.0188 -3.3962 19 6 2.1366 5.3937 -3.1194 20 6 2.1072 6.0372 -1.7177 21 7 3.2917 3.6836 0.0017 22 6 4.0541 2.5880 -0.1015 23 6 5.4515 2.6872 -0.2073 24 6 6.2035 1.5566 -0.3105 25 6 5.6088 0.2976 -0.3136 26 6 4.2564 0.1638 -0.2127 27 6 3.4526 1.3071 -0.1053 28 1 -0.3633 -1.0243 0.0828 29 1 -0.3634 0.5838 0.8458 30 1 -0.3633 0.4405 -0.9284 31 1 0.2449 2.3272 0.1845 32 1 -0.1183 5.8020 1.4237 33 1 0.7020 4.4263 2.2002 34 1 0.5241 6.9705 4.8566 35 1 0.1831 6.3180 -0.7565 36 1 0.4690 3.5125 -1.8266 37 1 -0.9218 4.6363 -1.9393 38 1 0.0959 5.8900 -3.7303 39 1 0.5958 4.2149 -4.1296 40 1 2.4938 6.1091 -3.8602 41 1 2.7644 4.5027 -3.1170 42 1 2.0475 7.1220 -1.8060 43 1 3.0001 5.7571 -1.1587 44 1 5.9277 3.6565 -0.2067 45 1 7.2774 1.6377 -0.3920 46 1 6.2273 -0.5840 -0.3962 47 1 3.8062 -0.8179 -0.2166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166533988.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:14 Heat of formation + Delta-G solvation = 12.090315 kcal Electronic energy + Delta-G solvation = -28658.785639 eV Core-core repulsion = 24999.194195 eV Total energy + Delta-G solvation = -3659.591445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07726 -39.87928 -39.57937 -37.59274 -35.81666 -34.23277 -33.48102 -31.19010 -30.58656 -29.58916 -29.41387 -28.42742 -27.46499 -25.03226 -24.33160 -23.12294 -22.76470 -21.44188 -20.90477 -19.01208 -18.65202 -18.53209 -18.25301 -17.29832 -16.89140 -16.73038 -16.38514 -16.09887 -15.77225 -15.43614 -15.11612 -15.03716 -14.78294 -14.60023 -14.42863 -14.17670 -13.97575 -13.43105 -13.16370 -12.86160 -12.76098 -12.65375 -12.62377 -12.43946 -12.38058 -12.32741 -12.11368 -11.91615 -11.90278 -11.79831 -11.54368 -11.45875 -11.40064 -10.62524 -10.58706 -10.36889 -9.62109 -8.88494 -8.69534 -8.05095 -6.26827 -0.40556 -0.10472 1.09724 1.34787 1.35724 1.47450 2.04058 2.05492 2.37841 2.57372 3.12121 3.19459 3.59174 3.75093 3.80339 3.86823 3.88637 3.98926 4.13414 4.19250 4.29779 4.33824 4.40862 4.48456 4.57396 4.58818 4.60259 4.69008 4.72070 4.73472 4.82748 4.85658 5.00222 5.08027 5.09124 5.16436 5.19111 5.20030 5.25216 5.36592 5.38338 5.47585 5.47961 5.55257 5.60215 5.75117 5.97664 6.13888 6.22174 6.60711 6.96558 7.02176 7.35854 7.47000 8.89848 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.009126 B = 0.005090 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.327115 B = 5499.405771 C = 6255.121789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.310 6.310 3 C 0.187 3.813 4 C -0.283 4.283 5 C 0.456 3.544 6 N -0.660 5.660 7 C 0.296 3.704 8 C -0.528 4.528 9 H 0.047 0.953 10 C 0.009 3.991 11 N -0.931 5.931 12 Si 0.954 3.046 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.278 1.278 16 C 0.171 3.829 17 C -0.133 4.133 18 C -0.111 4.111 19 C -0.111 4.111 20 C -0.143 4.143 21 N -0.536 5.536 22 C 0.145 3.855 23 C -0.130 4.130 24 C -0.077 4.077 25 C -0.131 4.131 26 C -0.078 4.078 27 C -0.152 4.152 28 H 0.136 0.864 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.013 0.987 33 H -0.012 1.012 34 H 0.264 0.736 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.127 0.873 45 H 0.162 0.838 46 H 0.164 0.836 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 -14.206 -14.139 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.221 6.221 3 C 0.133 3.867 4 C -0.307 4.307 5 C 0.215 3.785 6 N -0.387 5.387 7 C 0.174 3.826 8 C -0.567 4.567 9 H 0.065 0.935 10 C -0.189 4.189 11 N -0.572 5.572 12 Si 0.779 3.221 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.203 1.203 16 C 0.067 3.933 17 C -0.172 4.172 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.182 4.182 21 N -0.252 5.252 22 C 0.022 3.978 23 C -0.149 4.149 24 C -0.096 4.096 25 C -0.149 4.149 26 C -0.096 4.096 27 C -0.154 4.154 28 H 0.154 0.846 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.163 0.837 32 H 0.031 0.969 33 H 0.006 0.994 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.145 0.855 45 H 0.179 0.821 46 H 0.182 0.818 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.466 -13.576 -13.954 19.775 hybrid contribution -0.237 0.561 1.129 1.283 sum 3.229 -13.015 -12.825 18.555 Atomic orbital electron populations 1.23455 0.75759 1.06169 1.02345 1.85934 1.23812 1.25049 1.87280 1.18902 0.91412 0.84855 0.91542 1.22137 1.02197 0.92389 1.13958 1.17986 0.86062 0.86838 0.87589 1.46099 1.61142 1.26246 1.05239 1.18447 0.93431 0.91727 0.78953 1.21992 1.05721 1.26430 1.02594 0.93486 1.25728 0.97670 0.98487 0.97049 1.70030 1.28401 1.45408 1.13331 0.85621 0.79504 0.79552 0.77377 1.19512 1.20538 1.20345 1.21374 0.94598 0.93262 0.84068 1.22812 1.00327 0.99068 0.94971 1.22415 0.95078 1.01527 0.95841 1.22208 0.97320 0.99551 0.95808 1.22702 0.99282 0.99566 0.96688 1.68240 1.07386 1.32014 1.17541 1.19081 0.95122 0.87158 0.96452 1.20906 0.90486 1.00576 1.02977 1.21280 1.01502 0.91348 0.95504 1.21244 0.94409 0.98611 1.00611 1.21105 0.94333 0.97117 0.97083 1.18522 0.91108 0.96028 1.09778 0.84647 0.92702 0.91377 0.83713 0.96881 0.99351 0.92737 0.91232 0.92283 0.90512 0.90001 0.90436 0.90613 0.93909 0.92440 0.92455 0.85512 0.82092 0.81849 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.90 113.37 1.12 1.43 16 2 O -0.31 -8.19 9.80 -89.13 -0.87 -9.06 16 3 C 0.19 6.19 6.70 22.78 0.15 6.34 16 4 C -0.28 -10.40 7.45 22.35 0.17 -10.24 16 5 C 0.46 19.73 4.95 133.48 0.66 20.40 16 6 N -0.66 -29.97 2.34 -680.24 -1.59 -31.56 16 7 C 0.30 16.15 5.43 85.63 0.47 16.61 16 8 C -0.53 -31.37 9.39 25.60 0.24 -31.13 16 9 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 10 C 0.01 0.51 5.46 84.65 0.46 0.97 16 11 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 12 Si 0.95 46.85 29.54 68.60 2.03 48.88 16 13 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 15 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 16 C 0.17 6.59 3.43 45.71 0.16 6.74 16 17 C -0.13 -4.00 6.39 31.67 0.20 -3.79 16 18 C -0.11 -2.74 6.91 31.89 0.22 -2.52 16 19 C -0.11 -3.23 6.83 31.67 0.22 -3.02 16 20 C -0.14 -5.29 6.32 31.32 0.20 -5.10 16 21 N -0.54 -23.82 9.08 -186.49 -1.69 -25.51 16 22 C 0.14 5.50 6.60 40.19 0.27 5.77 16 23 C -0.13 -4.11 9.98 22.34 0.22 -3.89 16 24 C -0.08 -1.73 9.94 22.03 0.22 -1.52 16 25 C -0.13 -2.68 9.96 22.05 0.22 -2.46 16 26 C -0.08 -1.97 9.58 22.28 0.21 -1.76 16 27 C -0.15 -5.07 5.75 -21.19 -0.12 -5.20 16 28 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.13 7.19 -2.39 -0.02 1.11 16 30 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 31 H 0.15 4.87 6.34 -2.91 -0.02 4.85 16 32 H 0.01 0.75 7.89 -2.39 -0.02 0.73 16 33 H -0.01 -0.68 8.05 -2.39 -0.02 -0.70 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.07 2.78 7.80 -2.39 -0.02 2.76 16 36 H 0.06 1.88 5.63 -2.39 -0.01 1.87 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.06 2.53 6.50 -2.38 -0.02 2.51 16 44 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 45 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 46 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 47 H 0.15 3.07 7.66 -2.91 -0.02 3.05 16 Total: -1.00 -72.89 378.77 4.39 -68.50 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.96 Total: 17.55 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 5.28 Total: -12.36 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -3.00 Total: -113.50 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.87 Total: -9.06 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -72.89 4.39 -68.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533988.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.588 kcal (2) G-P(sol) polarization free energy of solvation -72.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds