Wall clock time and date at job start Tue Mar 31 2020 14:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35941 * 116.99653 * 2 1 4 4 C 1.39741 * 119.63598 * 359.97438 * 3 2 1 5 5 C 1.36053 * 120.97482 * 180.02562 * 4 3 2 6 6 C 1.40560 * 119.83573 * 359.97438 * 5 4 3 7 7 N 1.33859 * 120.91063 * 180.26881 * 6 5 4 8 8 C 1.31680 * 121.25157 * 180.27214 * 7 6 5 9 9 N 1.38766 * 119.22130 * 179.71899 * 8 7 6 10 10 C 1.46502 * 120.00281 * 11.23052 * 9 8 7 11 11 C 1.50696 * 109.47504 * 270.27725 * 10 9 8 12 12 H 1.08004 * 119.99827 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00383 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99449 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00446 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46681 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47197 * 119.99596 * 15 13 11 18 18 H 1.48492 * 109.47088 * 240.00092 * 15 13 11 19 19 C 1.46499 * 119.99684 * 191.51088 * 9 8 7 20 20 C 1.54269 * 110.03100 * 242.23453 * 19 9 8 21 21 C 1.54891 * 104.19839 * 217.10607 * 20 19 9 22 22 C 1.54887 * 102.74743 * 37.94257 * 21 20 19 23 23 C 1.53879 * 110.03534 * 125.07235 * 19 9 8 24 24 C 1.40232 * 121.54965 * 359.45223 * 8 7 6 25 25 C 1.36222 * 119.87347 * 0.26544 * 24 8 7 26 26 C 1.41015 * 118.30362 * 0.02562 * 25 24 8 27 27 C 1.36634 * 119.63378 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46611 * 60.00726 * 1 2 3 29 29 H 1.08997 * 109.46819 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47178 * 300.00209 * 1 2 3 31 31 H 1.08002 * 119.50833 * 359.97438 * 4 3 2 32 32 H 1.08003 * 120.08163 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46537 * 30.27809 * 10 9 8 34 34 H 1.09005 * 109.47056 * 150.27135 * 10 9 8 35 35 H 0.97003 * 119.99386 * 180.02562 * 14 13 11 36 36 H 1.08993 * 110.01885 * 3.67356 * 19 9 8 37 37 H 1.09007 * 110.48841 * 335.78587 * 20 19 9 38 38 H 1.09005 * 110.48785 * 98.42450 * 20 19 9 39 39 H 1.09000 * 110.75106 * 279.62737 * 21 20 19 40 40 H 1.08999 * 110.91509 * 156.32946 * 21 20 19 41 41 H 1.08999 * 110.48645 * 203.38347 * 22 21 20 42 42 H 1.08997 * 110.60224 * 80.79369 * 22 21 20 43 43 H 1.09003 * 110.02837 * 238.57043 * 23 19 9 44 44 H 1.08994 * 110.02761 * 359.94645 * 23 19 9 45 45 H 1.07993 * 120.06182 * 180.29735 * 24 8 7 46 46 H 1.08006 * 120.84869 * 179.97438 * 25 24 8 47 47 H 1.07999 * 120.19476 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2776 2.3783 -0.0005 5 6 1.8666 3.6047 -0.0011 6 6 3.2685 3.7071 -0.0005 7 7 3.8706 4.9026 0.0043 8 6 5.1833 5.0064 -0.0005 9 7 5.7632 6.2671 -0.0010 10 6 4.9397 7.4523 0.2507 11 6 4.3952 7.9722 -1.0547 12 1 4.6385 7.4702 -1.9795 13 6 3.5872 9.0893 -1.0687 14 7 3.2913 9.7008 0.0574 15 14 2.9127 9.7342 -2.6869 16 1 3.3901 8.8746 -3.7997 17 1 1.4284 9.7147 -2.6474 18 1 3.3840 11.1261 -2.9000 19 6 7.1978 6.4133 -0.2595 20 6 7.8966 7.0269 0.9714 21 6 8.9747 7.9619 0.3694 22 6 8.2561 8.5623 -0.8643 23 6 7.4264 7.3896 -1.4267 24 6 6.0090 3.8729 0.0005 25 6 5.4537 2.6290 0.0011 26 6 4.0474 2.5246 0.0001 27 6 3.4110 1.2741 0.0005 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2000 2.3057 -0.0014 32 1 1.2586 4.4973 -0.0019 33 1 4.1128 7.1869 0.9094 34 1 5.5479 8.2235 0.7236 35 1 2.7225 10.4866 0.0476 36 1 7.6356 5.4429 -0.4931 37 1 7.1858 7.5986 1.5682 38 1 8.3617 6.2469 1.5744 39 1 9.8535 7.3930 0.0658 40 1 9.2488 8.7454 1.0760 41 1 8.9835 8.9028 -1.6012 42 1 7.6035 9.3829 -0.5664 43 1 7.9759 6.8931 -2.2265 44 1 6.4699 7.7539 -1.8014 45 1 7.0830 3.9860 0.0013 46 1 6.0747 1.7453 0.0015 47 1 3.9966 0.3667 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:00 Heat of formation + Delta-G solvation = 25.793563 kcal Electronic energy + Delta-G solvation = -27783.134900 eV Core-core repulsion = 24124.137673 eV Total energy + Delta-G solvation = -3658.997227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.50903 -39.22627 -38.15347 -35.86614 -33.93289 -32.87509 -32.39545 -30.07695 -29.05709 -28.28822 -27.86503 -27.03344 -25.84813 -23.81119 -22.57154 -22.00777 -21.23521 -20.23303 -19.35944 -17.99470 -17.37988 -17.06142 -16.44594 -15.74230 -15.65663 -15.41252 -14.89983 -14.74955 -14.35298 -13.98921 -13.90930 -13.77286 -13.12500 -12.89572 -12.85892 -12.59671 -12.51680 -12.33902 -11.96475 -11.68832 -11.49298 -11.27459 -11.15184 -10.88125 -10.83895 -10.70400 -10.64554 -10.55164 -10.48097 -10.28474 -10.17081 -10.08799 -9.70778 -9.37407 -8.57119 -8.50794 -8.36836 -7.94359 -6.56186 -5.95950 -4.00707 0.88160 1.46455 2.48731 3.30606 3.38336 3.39497 3.40520 3.43493 3.79448 4.46883 4.68726 4.82892 4.94959 5.01801 5.03215 5.10052 5.11781 5.17896 5.26346 5.30627 5.34754 5.39273 5.41552 5.49156 5.63260 5.79275 5.90309 5.91526 5.96751 6.01719 6.07528 6.14793 6.23843 6.29396 6.34101 6.40798 6.48149 6.54287 6.59472 6.62915 6.79718 6.82605 6.98260 7.13459 7.23269 7.51623 7.53697 7.88214 8.04014 8.31358 8.35921 8.95201 9.05636 9.61277 11.08153 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.004030 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.512239 B = 6945.662059 C = 8842.077228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.324 6.324 3 C 0.084 3.916 4 C -0.168 4.168 5 C -0.070 4.070 6 C 0.164 3.836 7 N -0.517 5.517 8 C 0.426 3.574 9 N -0.578 5.578 10 C 0.258 3.742 11 C -0.507 4.507 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.151 3.849 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.152 4.152 24 C -0.210 4.210 25 C -0.042 4.042 26 C -0.131 4.131 27 C -0.119 4.119 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.136 0.864 33 H 0.041 0.959 34 H 0.031 0.969 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.114 0.886 45 H 0.131 0.869 46 H 0.131 0.869 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -13.681 0.938 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.039 3.961 4 C -0.188 4.188 5 C -0.089 4.089 6 C 0.039 3.961 7 N -0.237 5.237 8 C 0.178 3.822 9 N -0.287 5.287 10 C 0.138 3.862 11 C -0.546 4.546 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.535 5.535 15 Si 0.717 3.283 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.212 1.212 19 C 0.046 3.954 20 C -0.175 4.175 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.191 4.191 24 C -0.233 4.233 25 C -0.068 4.068 26 C -0.136 4.136 27 C -0.139 4.139 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.133 0.867 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.439 -12.780 1.021 13.274 hybrid contribution -0.245 -0.131 -0.937 0.977 sum 3.194 -12.911 0.085 13.300 Atomic orbital electron populations 1.22965 0.79126 1.03315 1.01211 1.86037 1.20782 1.27172 1.89858 1.18443 0.92096 0.83836 1.01743 1.20929 0.99830 0.92116 1.05905 1.20628 0.92827 0.97371 0.98122 1.18627 0.93655 0.87489 0.96307 1.67900 1.09093 1.24283 1.22410 1.18573 0.88408 0.86093 0.89153 1.47272 1.06884 1.04012 1.70564 1.19195 0.89651 0.80485 0.96824 1.21420 1.29320 1.10531 0.93289 0.92400 1.24880 0.96173 0.96823 0.96093 1.69938 1.37522 1.20532 1.25469 0.86579 0.78951 0.78505 0.84216 1.19919 1.21060 1.21178 1.21634 0.80540 0.98588 0.94644 1.22800 0.97948 0.98930 0.97802 1.22427 0.97305 0.98465 0.97713 1.22268 0.98185 0.98628 0.96498 1.22820 1.03504 0.95886 0.96841 1.21480 1.00664 0.92653 1.08542 1.21025 0.93166 0.97133 0.95461 1.18311 0.93985 0.93402 1.07854 1.19901 0.91449 0.96809 1.05697 0.92900 0.88775 0.92890 0.85540 0.84573 0.94071 0.95103 0.93002 0.90498 0.90239 0.92205 0.92158 0.91968 0.92621 0.90901 0.92913 0.86746 0.85173 0.85137 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.80 101.05 0.99 1.25 16 2 O -0.32 -4.23 10.48 -19.55 -0.20 -4.44 16 3 C 0.08 1.23 6.64 -39.60 -0.26 0.96 16 4 C -0.17 -2.44 8.94 -39.80 -0.36 -2.79 16 5 C -0.07 -1.22 9.97 -39.49 -0.39 -1.61 16 6 C 0.16 3.21 6.60 -84.82 -0.56 2.65 16 7 N -0.52 -11.53 9.20 -10.18 -0.09 -11.62 16 8 C 0.43 8.71 7.32 -155.45 -1.14 7.57 16 9 N -0.58 -11.96 2.53 -166.26 -0.42 -12.38 16 10 C 0.26 6.40 4.49 -5.19 -0.02 6.37 16 11 C -0.51 -13.58 7.54 -34.44 -0.26 -13.84 16 12 H 0.06 1.59 6.89 -52.48 -0.36 1.23 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 15 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.15 2.54 3.15 -66.81 -0.21 2.33 16 20 C -0.14 -2.06 6.34 -25.07 -0.16 -2.22 16 21 C -0.12 -1.62 6.91 -24.74 -0.17 -1.79 16 22 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 23 C -0.15 -2.62 6.26 -25.61 -0.16 -2.78 16 24 C -0.21 -3.43 9.16 -39.56 -0.36 -3.79 16 25 C -0.04 -0.63 9.88 -39.26 -0.39 -1.02 16 26 C -0.13 -2.20 5.74 -106.78 -0.61 -2.82 16 27 C -0.12 -1.78 9.68 -39.38 -0.38 -2.16 16 28 H 0.05 0.44 7.64 -51.93 -0.40 0.04 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.43 7.64 -51.93 -0.40 0.04 16 31 H 0.13 1.47 6.22 -52.49 -0.33 1.14 16 32 H 0.14 2.37 8.06 -52.48 -0.42 1.94 16 33 H 0.04 1.16 7.56 -51.93 -0.39 0.77 16 34 H 0.03 0.80 6.64 -51.93 -0.34 0.45 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.08 1.13 5.48 -51.93 -0.28 0.85 16 37 H 0.08 1.40 6.50 -51.93 -0.34 1.06 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.11 2.42 4.58 -51.93 -0.24 2.18 16 45 H 0.13 1.77 5.92 -52.49 -0.31 1.46 16 46 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 47 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 371.58 15.07 5.60 5.60 Total: -1.00 -30.79 371.58 -10.87 -41.66 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.75 Total: 3.79 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -4.72 Total: -14.08 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.22 Total: -49.05 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.20 Total: -4.44 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.79 -10.87 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.451 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds