Wall clock time and date at job start Tue Mar 31 2020 14:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35941 * 116.99653 * 2 1 4 4 C 1.39741 * 119.63598 * 359.97438 * 3 2 1 5 5 C 1.36053 * 120.97482 * 180.02562 * 4 3 2 6 6 C 1.40560 * 119.83573 * 359.97438 * 5 4 3 7 7 N 1.33859 * 120.91063 * 180.26881 * 6 5 4 8 8 C 1.31680 * 121.25157 * 180.27214 * 7 6 5 9 9 N 1.38766 * 119.22130 * 179.71899 * 8 7 6 10 10 C 1.46502 * 120.00281 * 11.23052 * 9 8 7 11 11 C 1.50696 * 109.47504 * 270.27725 * 10 9 8 12 12 H 1.08004 * 119.99827 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00383 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99449 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00446 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46681 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47197 * 119.99596 * 15 13 11 18 18 H 1.48492 * 109.47088 * 240.00092 * 15 13 11 19 19 C 1.46499 * 119.99684 * 191.51088 * 9 8 7 20 20 C 1.54269 * 110.03100 * 242.23453 * 19 9 8 21 21 C 1.54891 * 104.19839 * 217.10607 * 20 19 9 22 22 C 1.54887 * 102.74743 * 37.94257 * 21 20 19 23 23 C 1.53879 * 110.03534 * 125.07235 * 19 9 8 24 24 C 1.40232 * 121.54965 * 359.45223 * 8 7 6 25 25 C 1.36222 * 119.87347 * 0.26544 * 24 8 7 26 26 C 1.41015 * 118.30362 * 0.02562 * 25 24 8 27 27 C 1.36634 * 119.63378 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46611 * 60.00726 * 1 2 3 29 29 H 1.08997 * 109.46819 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47178 * 300.00209 * 1 2 3 31 31 H 1.08002 * 119.50833 * 359.97438 * 4 3 2 32 32 H 1.08003 * 120.08163 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.46537 * 30.27809 * 10 9 8 34 34 H 1.09005 * 109.47056 * 150.27135 * 10 9 8 35 35 H 0.97003 * 119.99386 * 180.02562 * 14 13 11 36 36 H 1.08993 * 110.01885 * 3.67356 * 19 9 8 37 37 H 1.09007 * 110.48841 * 335.78587 * 20 19 9 38 38 H 1.09005 * 110.48785 * 98.42450 * 20 19 9 39 39 H 1.09000 * 110.75106 * 279.62737 * 21 20 19 40 40 H 1.08999 * 110.91509 * 156.32946 * 21 20 19 41 41 H 1.08999 * 110.48645 * 203.38347 * 22 21 20 42 42 H 1.08997 * 110.60224 * 80.79369 * 22 21 20 43 43 H 1.09003 * 110.02837 * 238.57043 * 23 19 9 44 44 H 1.08994 * 110.02761 * 359.94645 * 23 19 9 45 45 H 1.07993 * 120.06182 * 180.29735 * 24 8 7 46 46 H 1.08006 * 120.84869 * 179.97438 * 25 24 8 47 47 H 1.07999 * 120.19476 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2776 2.3783 -0.0005 5 6 1.8666 3.6047 -0.0011 6 6 3.2685 3.7071 -0.0005 7 7 3.8706 4.9026 0.0043 8 6 5.1833 5.0064 -0.0005 9 7 5.7632 6.2671 -0.0010 10 6 4.9397 7.4523 0.2507 11 6 4.3952 7.9722 -1.0547 12 1 4.6385 7.4702 -1.9795 13 6 3.5872 9.0893 -1.0687 14 7 3.2913 9.7008 0.0574 15 14 2.9127 9.7342 -2.6869 16 1 3.3901 8.8746 -3.7997 17 1 1.4284 9.7147 -2.6474 18 1 3.3840 11.1261 -2.9000 19 6 7.1978 6.4133 -0.2595 20 6 7.8966 7.0269 0.9714 21 6 8.9747 7.9619 0.3694 22 6 8.2561 8.5623 -0.8643 23 6 7.4264 7.3896 -1.4267 24 6 6.0090 3.8729 0.0005 25 6 5.4537 2.6290 0.0011 26 6 4.0474 2.5246 0.0001 27 6 3.4110 1.2741 0.0005 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2000 2.3057 -0.0014 32 1 1.2586 4.4973 -0.0019 33 1 4.1128 7.1869 0.9094 34 1 5.5479 8.2235 0.7236 35 1 2.7225 10.4866 0.0476 36 1 7.6356 5.4429 -0.4931 37 1 7.1858 7.5986 1.5682 38 1 8.3617 6.2469 1.5744 39 1 9.8535 7.3930 0.0658 40 1 9.2488 8.7454 1.0760 41 1 8.9835 8.9028 -1.6012 42 1 7.6035 9.3829 -0.5664 43 1 7.9759 6.8931 -2.2265 44 1 6.4699 7.7539 -1.8014 45 1 7.0830 3.9860 0.0013 46 1 6.0747 1.7453 0.0015 47 1 3.9966 0.3667 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:59 Heat of formation + Delta-G solvation = 9.642459 kcal Electronic energy + Delta-G solvation = -27783.835265 eV Core-core repulsion = 24124.137673 eV Total energy + Delta-G solvation = -3659.697592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78414 -40.44071 -39.40029 -37.10812 -35.53207 -34.35429 -34.10579 -31.36380 -30.39972 -29.65695 -29.32888 -28.09404 -27.24582 -25.44044 -23.98399 -23.34055 -22.63761 -21.45348 -20.67520 -19.16948 -18.72522 -18.54128 -18.34376 -16.98711 -16.77191 -16.58147 -16.40301 -16.09511 -15.83055 -15.40405 -15.15400 -14.99719 -14.52095 -14.45847 -14.06623 -14.02216 -13.88591 -13.43600 -13.36852 -13.13678 -12.92446 -12.76935 -12.68226 -12.51978 -12.40514 -12.18285 -11.95083 -11.84332 -11.82982 -11.64285 -11.54729 -11.35308 -11.29065 -11.12921 -10.54086 -9.98326 -9.88270 -9.21941 -8.26898 -7.85888 -6.21051 -0.35393 0.15768 1.22477 1.33490 1.35643 1.46416 2.11962 2.29299 2.43653 2.47599 3.15815 3.34077 3.59312 3.77473 3.82397 3.87015 3.96207 4.05455 4.06448 4.16693 4.27461 4.39676 4.45443 4.47793 4.61068 4.64514 4.70268 4.71948 4.74540 4.81321 4.89124 4.91981 5.05757 5.12261 5.13581 5.16882 5.20412 5.26329 5.30469 5.31700 5.35893 5.43786 5.56836 5.62844 5.69278 5.73794 5.86805 6.19424 6.36496 6.50634 6.72727 6.90709 7.43307 7.61094 8.93716 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011623 B = 0.004030 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.512239 B = 6945.662059 C = 8842.077228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.086 3.914 4 C -0.151 4.151 5 C -0.101 4.101 6 C 0.128 3.872 7 N -0.575 5.575 8 C 0.402 3.598 9 N -0.590 5.590 10 C 0.286 3.714 11 C -0.501 4.501 12 H 0.046 0.954 13 C 0.010 3.990 14 N -0.930 5.930 15 Si 0.950 3.050 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.146 3.854 20 C -0.134 4.134 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.154 4.154 24 C -0.213 4.213 25 C -0.026 4.026 26 C -0.137 4.137 27 C -0.117 4.117 28 H 0.060 0.940 29 H 0.122 0.878 30 H 0.060 0.940 31 H 0.155 0.845 32 H 0.118 0.882 33 H -0.005 1.005 34 H 0.012 0.988 35 H 0.262 0.738 36 H 0.109 0.891 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.163 0.837 46 H 0.181 0.819 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 -17.145 0.088 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.040 3.960 4 C -0.170 4.170 5 C -0.121 4.121 6 C 0.005 3.995 7 N -0.296 5.296 8 C 0.154 3.846 9 N -0.301 5.301 10 C 0.165 3.835 11 C -0.540 4.540 12 H 0.064 0.936 13 C -0.188 4.188 14 N -0.571 5.571 15 Si 0.776 3.224 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.200 1.200 19 C 0.043 3.957 20 C -0.173 4.173 21 C -0.146 4.146 22 C -0.155 4.155 23 C -0.193 4.193 24 C -0.236 4.236 25 C -0.051 4.051 26 C -0.141 4.141 27 C -0.136 4.136 28 H 0.078 0.922 29 H 0.140 0.860 30 H 0.079 0.921 31 H 0.173 0.827 32 H 0.136 0.864 33 H 0.013 0.987 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.180 0.820 46 H 0.198 0.802 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.208 -16.291 0.164 17.104 hybrid contribution -0.945 0.739 -0.657 1.368 sum 4.263 -15.553 -0.493 16.134 Atomic orbital electron populations 1.23316 0.76923 1.05531 1.01958 1.86045 1.23028 1.25894 1.89445 1.18581 0.92431 0.84378 1.00574 1.21169 1.01350 0.91059 1.03466 1.20646 0.92529 0.98118 1.00820 1.18975 0.94625 0.87915 0.97966 1.67765 1.10875 1.26652 1.24279 1.19044 0.88708 0.86990 0.89873 1.47121 1.07970 1.03035 1.71944 1.18448 0.88506 0.81763 0.94796 1.21565 1.28739 1.10130 0.93547 0.93618 1.25640 0.96699 0.97309 0.99146 1.70054 1.38542 1.21146 1.27372 0.85625 0.78034 0.78259 0.80443 1.19732 1.21030 1.19996 1.21945 0.78553 1.00100 0.95110 1.22776 0.97719 0.99622 0.97145 1.22406 0.97394 0.98416 0.96406 1.22233 0.98056 0.97021 0.98221 1.22770 1.01721 0.96888 0.97875 1.21662 1.01701 0.91569 1.08626 1.21556 0.92623 0.98238 0.92711 1.18581 0.95126 0.93112 1.07315 1.20204 0.91973 0.96959 1.04479 0.92176 0.85986 0.92090 0.82748 0.86368 0.98651 0.96973 0.92950 0.87368 0.93901 0.89431 0.88762 0.91266 0.90268 0.94598 0.90445 0.91370 0.81964 0.80165 0.82576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.80 113.37 1.11 1.36 16 2 O -0.33 -7.54 10.48 -92.89 -0.97 -8.51 16 3 C 0.09 2.32 6.64 22.26 0.15 2.47 16 4 C -0.15 -4.27 8.94 22.12 0.20 -4.08 16 5 C -0.10 -3.71 9.97 22.33 0.22 -3.49 16 6 C 0.13 5.20 6.60 40.23 0.27 5.47 16 7 N -0.58 -27.30 9.20 -186.13 -1.71 -29.01 16 8 C 0.40 16.93 7.32 133.63 0.98 17.91 16 9 N -0.59 -25.59 2.53 -679.93 -1.72 -27.31 16 10 C 0.29 15.45 4.49 85.63 0.38 15.83 16 11 C -0.50 -28.72 7.54 25.60 0.19 -28.53 16 12 H 0.05 2.68 6.89 -2.91 -0.02 2.66 16 13 C 0.01 0.57 5.46 84.65 0.46 1.04 16 14 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 15 Si 0.95 46.21 29.54 68.60 2.03 48.24 16 16 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 18 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 19 C 0.15 4.86 3.15 45.72 0.14 5.00 16 20 C -0.13 -3.97 6.34 31.67 0.20 -3.77 16 21 C -0.11 -2.69 6.91 31.88 0.22 -2.47 16 22 C -0.12 -3.60 6.83 31.67 0.22 -3.39 16 23 C -0.15 -5.32 6.26 31.32 0.20 -5.12 16 24 C -0.21 -6.57 9.16 22.28 0.20 -6.36 16 25 C -0.03 -0.71 9.88 22.48 0.22 -0.48 16 26 C -0.14 -4.42 5.74 -21.27 -0.12 -4.54 16 27 C -0.12 -3.16 9.68 22.40 0.22 -2.94 16 28 H 0.06 0.81 7.64 -2.39 -0.02 0.80 16 29 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 0.82 7.64 -2.39 -0.02 0.80 16 31 H 0.16 3.35 6.22 -2.91 -0.02 3.33 16 32 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 33 H 0.00 -0.29 7.56 -2.39 -0.02 -0.30 16 34 H 0.01 0.70 6.64 -2.38 -0.02 0.68 16 35 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.11 2.88 5.48 -2.39 -0.01 2.86 16 37 H 0.04 1.58 6.50 -2.38 -0.02 1.57 16 38 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.07 3.03 4.58 -2.39 -0.01 3.02 16 45 H 0.16 3.80 5.92 -2.91 -0.02 3.78 16 46 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -74.67 371.58 4.34 -70.32 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.98 Total: 18.90 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 5.46 Total: -16.10 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -3.15 Total: -112.86 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.97 Total: -8.51 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.67 4.34 -70.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.966 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds