Wall clock time and date at job start Tue Mar 31 2020 14:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35886 * 117.00160 * 2 1 4 4 C 1.37600 * 120.22508 * 359.97438 * 3 2 1 5 5 C 1.39194 * 120.81902 * 179.97438 * 4 3 2 6 6 C 1.36204 * 120.91695 * 359.97438 * 5 4 3 7 7 C 1.40352 * 119.89671 * 0.04658 * 6 5 4 8 8 C 1.41037 * 121.19289 * 180.02562 * 7 6 5 9 9 C 1.36205 * 118.30385 * 179.97438 * 8 7 6 10 10 C 1.40235 * 119.88292 * 0.02562 * 9 8 7 11 11 N 1.38765 * 119.23903 * 179.97438 * 10 9 8 12 12 C 1.46503 * 120.00504 * 4.99914 * 11 10 9 13 13 C 1.50699 * 109.46973 * 89.99637 * 12 11 10 14 14 H 1.08004 * 119.99812 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99804 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00418 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00038 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47004 * 60.00240 * 17 15 13 19 19 H 1.48492 * 109.47271 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47120 * 300.00690 * 17 15 13 21 21 C 1.46501 * 119.99754 * 185.00179 * 11 10 9 22 22 C 1.54257 * 110.03682 * 57.16658 * 21 11 10 23 23 C 1.54887 * 104.19883 * 217.10689 * 22 21 11 24 24 C 1.54896 * 102.74898 * 37.94129 * 23 22 21 25 25 C 1.53881 * 110.02957 * 299.99681 * 21 11 10 26 26 N 1.31678 * 121.51684 * 359.97219 * 10 9 8 27 27 C 1.33771 * 121.25302 * 0.02618 * 26 10 9 28 28 H 1.08997 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46698 * 299.99751 * 1 2 3 30 30 H 1.09000 * 109.47001 * 59.99756 * 1 2 3 31 31 H 1.08007 * 119.59197 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.53671 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.05628 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.84571 * 359.96071 * 8 7 6 35 35 H 1.08001 * 120.05870 * 180.27412 * 9 8 7 36 36 H 1.08991 * 109.47418 * 209.99999 * 12 11 10 37 37 H 1.08998 * 109.46649 * 330.00096 * 12 11 10 38 38 H 0.96988 * 120.00344 * 179.97438 * 16 15 13 39 39 H 1.09007 * 110.01756 * 178.61117 * 21 11 10 40 40 H 1.09001 * 110.48788 * 335.78607 * 22 21 11 41 41 H 1.08996 * 110.48998 * 98.42603 * 22 21 11 42 42 H 1.08994 * 110.75767 * 279.62362 * 23 22 21 43 43 H 1.09006 * 110.91777 * 156.32762 * 23 22 21 44 44 H 1.08994 * 110.48245 * 203.38277 * 24 23 22 45 45 H 1.08998 * 110.48323 * 80.73524 * 24 23 22 46 46 H 1.09002 * 110.03174 * 238.56907 * 25 21 11 47 47 H 1.08995 * 110.03554 * 0.02562 * 25 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.3011 2.3677 -0.0005 5 6 1.9201 3.6144 0.0000 6 6 3.2780 3.7215 0.0016 7 6 4.0710 2.5635 0.0017 8 6 5.4792 2.6426 0.0039 9 6 6.1912 1.4814 0.0044 10 6 5.5199 0.2502 0.0023 11 7 6.2585 -0.9245 0.0023 12 6 7.7183 -0.8721 0.1151 13 6 8.1118 -0.9212 1.5690 14 1 7.3507 -0.9855 2.3325 15 6 9.4435 -0.8851 1.9242 16 7 10.3704 -0.8073 0.9944 17 14 9.9315 -0.9467 3.7264 18 1 9.4329 -2.2080 4.3313 19 1 11.4110 -0.8934 3.8407 20 1 9.3382 0.2128 4.4397 21 6 5.5786 -2.2173 -0.1105 22 6 4.7315 -2.2583 -1.3990 23 6 3.4623 -3.0485 -0.9943 24 6 3.1951 -2.5507 0.4479 25 6 4.6018 -2.4033 1.0639 26 7 4.2048 0.1832 0.0003 27 6 3.4535 1.2900 -0.0003 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 0.2227 2.3078 -0.0005 32 1 1.3153 4.5092 0.0000 33 1 3.7437 4.6960 0.0024 34 1 5.9801 3.5994 0.0048 35 1 7.2708 1.5089 0.0105 36 1 8.1540 -1.7231 -0.4082 37 1 8.0839 0.0536 -0.3292 38 1 11.3071 -0.7816 1.2443 39 1 6.3110 -3.0247 -0.1184 40 1 4.4679 -1.2488 -1.7145 41 1 5.2683 -2.7788 -2.1921 42 1 3.6559 -4.1210 -1.0032 43 1 2.6259 -2.8031 -1.6488 44 1 2.6108 -3.2848 1.0026 45 1 2.6834 -1.5885 0.4307 46 1 4.8595 -3.3013 1.6253 47 1 4.6333 -1.5316 1.7175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:44 Heat of formation + Delta-G solvation = 27.143949 kcal Electronic energy + Delta-G solvation = -28898.801060 eV Core-core repulsion = 25239.862390 eV Total energy + Delta-G solvation = -3658.938670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60612 -38.97709 -37.84206 -35.93155 -34.41315 -32.57889 -32.39542 -29.55850 -29.17094 -28.05416 -27.85483 -27.21659 -25.84765 -23.42790 -23.12005 -21.57271 -21.38418 -20.12730 -19.37986 -17.79455 -17.50764 -16.48111 -16.44469 -15.85570 -15.61367 -15.47551 -15.02426 -14.66321 -14.28985 -13.99383 -13.92057 -13.35510 -13.28160 -13.10440 -12.74393 -12.60388 -12.49497 -11.89503 -11.78106 -11.66615 -11.47093 -11.31369 -11.12889 -10.88436 -10.82835 -10.81196 -10.60457 -10.47305 -10.42494 -10.19178 -9.95761 -9.77814 -9.71345 -9.55214 -8.77864 -8.66757 -8.51859 -7.63991 -6.62532 -6.10884 -4.23344 0.98847 1.43533 2.51811 3.25762 3.30178 3.33315 3.39360 3.45273 3.83469 4.35206 4.67238 4.78154 4.97222 5.13438 5.16292 5.17793 5.24574 5.27915 5.30391 5.37095 5.40484 5.48580 5.52937 5.57415 5.77568 5.84349 5.98869 6.10909 6.16759 6.20716 6.22787 6.31062 6.33991 6.44453 6.47432 6.50224 6.62274 6.67470 6.76508 6.84992 6.87862 6.95711 6.99455 7.17003 7.21167 7.27782 7.54902 7.73746 7.94167 8.08309 8.34789 8.75492 8.95064 9.44216 10.89855 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.004671 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.898329 B = 5992.399429 C = 7278.103777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.290 6.290 3 C 0.130 3.870 4 C -0.205 4.205 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.131 4.131 8 C -0.051 4.051 9 C -0.182 4.182 10 C 0.433 3.567 11 N -0.573 5.573 12 C 0.247 3.753 13 C -0.533 4.533 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.161 3.839 22 C -0.127 4.127 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.116 4.116 26 N -0.534 5.534 27 C 0.170 3.830 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.265 0.735 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.040 0.960 45 H 0.103 0.897 46 H 0.049 0.951 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.428 3.938 -3.996 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.203 6.203 3 C 0.083 3.917 4 C -0.226 4.226 5 C -0.142 4.142 6 C -0.130 4.130 7 C -0.136 4.136 8 C -0.076 4.076 9 C -0.205 4.205 10 C 0.185 3.815 11 N -0.281 5.281 12 C 0.128 3.872 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.138 4.138 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.057 3.943 22 C -0.165 4.165 23 C -0.150 4.150 24 C -0.157 4.157 25 C -0.155 4.155 26 N -0.256 5.256 27 C 0.045 3.955 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.164 0.836 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.121 0.879 46 H 0.068 0.932 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.402 2.752 -4.024 17.111 hybrid contribution 0.667 0.923 1.125 1.601 sum -15.735 3.675 -2.899 16.417 Atomic orbital electron populations 1.23019 0.79758 1.03477 1.00804 1.86189 1.19837 1.26159 1.88104 1.18654 0.89982 0.84466 0.98571 1.20888 0.99344 0.92096 1.10260 1.20282 0.94528 0.96356 1.02988 1.20685 0.93587 0.96932 1.01748 1.18358 0.94093 0.93329 1.07817 1.21112 0.92008 0.98408 0.96059 1.21728 1.02551 0.91740 1.04451 1.18582 0.87741 0.86809 0.88374 1.47398 1.07396 1.01482 1.71779 1.19460 0.72089 0.98491 0.97169 1.21505 0.92015 1.51436 0.92236 0.92143 1.24927 0.96286 0.94834 0.97740 1.69907 1.00775 1.49856 1.32707 0.86578 0.77262 0.78837 0.84940 1.20151 1.21160 1.20151 1.21486 0.93684 0.85015 0.94150 1.22669 0.95791 1.01212 0.96844 1.22280 0.97150 0.98093 0.97437 1.22452 0.96799 1.02248 0.94246 1.22306 0.94738 1.00792 0.97623 1.67878 1.04113 1.28771 1.24822 1.17789 0.90432 0.88545 0.98781 0.88624 0.93095 0.93112 0.85992 0.86635 0.86327 0.84913 0.83568 0.94471 0.94439 0.92502 0.89957 0.90368 0.93048 0.92966 0.92583 0.94139 0.87889 0.93222 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.29 -4.27 7.71 -19.38 -0.15 -4.42 16 3 C 0.13 2.05 6.73 -38.78 -0.26 1.79 16 4 C -0.21 -2.68 9.02 -39.46 -0.36 -3.04 16 5 C -0.12 -1.53 9.95 -39.96 -0.40 -1.93 16 6 C -0.11 -1.51 9.75 -39.52 -0.39 -1.90 16 7 C -0.13 -2.17 5.74 -106.78 -0.61 -2.78 16 8 C -0.05 -0.83 9.88 -39.25 -0.39 -1.22 16 9 C -0.18 -3.48 9.18 -39.56 -0.36 -3.84 16 10 C 0.43 8.83 6.24 -155.45 -0.97 7.86 16 11 N -0.57 -12.10 2.49 -166.27 -0.41 -12.52 16 12 C 0.25 5.92 4.97 -5.19 -0.03 5.90 16 13 C -0.53 -14.04 9.39 -34.44 -0.32 -14.36 16 14 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 17 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 C 0.16 3.08 3.36 -66.81 -0.22 2.85 16 22 C -0.13 -2.15 6.05 -25.08 -0.15 -2.31 16 23 C -0.11 -1.68 6.91 -24.74 -0.17 -1.85 16 24 C -0.12 -1.95 6.35 -25.07 -0.16 -2.10 16 25 C -0.12 -2.14 5.75 -25.61 -0.15 -2.29 16 26 N -0.53 -10.32 4.75 -10.11 -0.05 -10.37 16 27 C 0.17 3.06 6.61 -84.73 -0.56 2.50 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 31 H 0.12 1.26 6.25 -52.48 -0.33 0.93 16 32 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.15 2.93 5.96 -52.49 -0.31 2.62 16 36 H 0.04 0.94 7.92 -51.93 -0.41 0.53 16 37 H 0.04 0.92 5.93 -51.93 -0.31 0.62 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.08 1.60 7.82 -51.92 -0.41 1.19 16 40 H 0.08 1.47 6.12 -51.93 -0.32 1.15 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 1.78 4.11 -51.93 -0.21 1.57 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.43 7.01 -51.93 -0.36 1.06 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -28.60 365.81 -10.79 -39.40 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.81 Total: 4.34 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -4.60 Total: -13.85 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.27 Total: -46.89 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.15 Total: -4.42 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.60 -10.79 -39.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.540 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds