Wall clock time and date at job start Tue Mar 31 2020 14:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35886 * 117.00160 * 2 1 4 4 C 1.37600 * 120.22508 * 359.97438 * 3 2 1 5 5 C 1.39194 * 120.81902 * 179.97438 * 4 3 2 6 6 C 1.36204 * 120.91695 * 359.97438 * 5 4 3 7 7 C 1.40352 * 119.89671 * 0.04658 * 6 5 4 8 8 C 1.41037 * 121.19289 * 180.02562 * 7 6 5 9 9 C 1.36205 * 118.30385 * 179.97438 * 8 7 6 10 10 C 1.40235 * 119.88292 * 0.02562 * 9 8 7 11 11 N 1.38765 * 119.23903 * 179.97438 * 10 9 8 12 12 C 1.46503 * 120.00504 * 4.99914 * 11 10 9 13 13 C 1.50699 * 109.46973 * 89.99637 * 12 11 10 14 14 H 1.08004 * 119.99812 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99804 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00418 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00038 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47004 * 60.00240 * 17 15 13 19 19 H 1.48492 * 109.47271 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47120 * 300.00690 * 17 15 13 21 21 C 1.46501 * 119.99754 * 185.00179 * 11 10 9 22 22 C 1.54257 * 110.03682 * 57.16658 * 21 11 10 23 23 C 1.54887 * 104.19883 * 217.10689 * 22 21 11 24 24 C 1.54896 * 102.74898 * 37.94129 * 23 22 21 25 25 C 1.53881 * 110.02957 * 299.99681 * 21 11 10 26 26 N 1.31678 * 121.51684 * 359.97219 * 10 9 8 27 27 C 1.33771 * 121.25302 * 0.02618 * 26 10 9 28 28 H 1.08997 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46698 * 299.99751 * 1 2 3 30 30 H 1.09000 * 109.47001 * 59.99756 * 1 2 3 31 31 H 1.08007 * 119.59197 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.53671 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.05628 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.84571 * 359.96071 * 8 7 6 35 35 H 1.08001 * 120.05870 * 180.27412 * 9 8 7 36 36 H 1.08991 * 109.47418 * 209.99999 * 12 11 10 37 37 H 1.08998 * 109.46649 * 330.00096 * 12 11 10 38 38 H 0.96988 * 120.00344 * 179.97438 * 16 15 13 39 39 H 1.09007 * 110.01756 * 178.61117 * 21 11 10 40 40 H 1.09001 * 110.48788 * 335.78607 * 22 21 11 41 41 H 1.08996 * 110.48998 * 98.42603 * 22 21 11 42 42 H 1.08994 * 110.75767 * 279.62362 * 23 22 21 43 43 H 1.09006 * 110.91777 * 156.32762 * 23 22 21 44 44 H 1.08994 * 110.48245 * 203.38277 * 24 23 22 45 45 H 1.08998 * 110.48323 * 80.73524 * 24 23 22 46 46 H 1.09002 * 110.03174 * 238.56907 * 25 21 11 47 47 H 1.08995 * 110.03554 * 0.02562 * 25 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.3011 2.3677 -0.0005 5 6 1.9201 3.6144 0.0000 6 6 3.2780 3.7215 0.0016 7 6 4.0710 2.5635 0.0017 8 6 5.4792 2.6426 0.0039 9 6 6.1912 1.4814 0.0044 10 6 5.5199 0.2502 0.0023 11 7 6.2585 -0.9245 0.0023 12 6 7.7183 -0.8721 0.1151 13 6 8.1118 -0.9212 1.5690 14 1 7.3507 -0.9855 2.3325 15 6 9.4435 -0.8851 1.9242 16 7 10.3704 -0.8073 0.9944 17 14 9.9315 -0.9467 3.7264 18 1 9.4329 -2.2080 4.3313 19 1 11.4110 -0.8934 3.8407 20 1 9.3382 0.2128 4.4397 21 6 5.5786 -2.2173 -0.1105 22 6 4.7315 -2.2583 -1.3990 23 6 3.4623 -3.0485 -0.9943 24 6 3.1951 -2.5507 0.4479 25 6 4.6018 -2.4033 1.0639 26 7 4.2048 0.1832 0.0003 27 6 3.4535 1.2900 -0.0003 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 0.2227 2.3078 -0.0005 32 1 1.3153 4.5092 0.0000 33 1 3.7437 4.6960 0.0024 34 1 5.9801 3.5994 0.0048 35 1 7.2708 1.5089 0.0105 36 1 8.1540 -1.7231 -0.4082 37 1 8.0839 0.0536 -0.3292 38 1 11.3071 -0.7816 1.2443 39 1 6.3110 -3.0247 -0.1184 40 1 4.4679 -1.2488 -1.7145 41 1 5.2683 -2.7788 -2.1921 42 1 3.6559 -4.1210 -1.0032 43 1 2.6259 -2.8031 -1.6488 44 1 2.6108 -3.2848 1.0026 45 1 2.6834 -1.5885 0.4307 46 1 4.8595 -3.3013 1.6253 47 1 4.6333 -1.5316 1.7175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:43 Heat of formation + Delta-G solvation = 14.807842 kcal Electronic energy + Delta-G solvation = -28899.335994 eV Core-core repulsion = 25239.862390 eV Total energy + Delta-G solvation = -3659.473604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.86543 -40.22330 -39.08791 -37.16971 -36.01751 -34.36225 -33.78256 -30.86574 -30.39426 -29.50568 -29.40832 -28.17632 -27.35936 -25.08955 -24.41701 -23.10218 -22.52993 -21.44029 -20.80102 -18.93744 -18.86985 -18.43925 -17.82099 -17.17106 -16.84404 -16.58672 -16.45435 -16.22408 -15.63683 -15.34316 -15.14244 -14.73926 -14.57056 -14.49734 -14.26485 -13.97134 -13.78886 -13.39782 -13.31363 -12.97484 -12.76712 -12.67976 -12.61561 -12.44353 -12.35247 -12.00937 -11.96995 -11.86313 -11.79958 -11.75615 -11.62302 -11.43936 -11.11062 -10.81789 -10.63644 -10.19478 -10.02078 -8.86376 -8.33443 -7.87391 -6.36486 -0.23406 0.17906 1.26990 1.37752 1.38103 1.46720 2.19664 2.30062 2.42472 2.44252 3.06647 3.36715 3.54328 3.82844 3.92613 4.00127 4.06709 4.12492 4.19770 4.21865 4.39258 4.49727 4.50217 4.53895 4.59467 4.63255 4.71529 4.76213 4.82106 4.83607 4.91840 4.99388 5.06218 5.09656 5.15759 5.17253 5.22231 5.27215 5.32746 5.45915 5.48758 5.50600 5.60351 5.66199 5.72978 5.95675 5.99559 6.05095 6.23703 6.58559 6.75799 6.81689 7.30799 7.48911 8.83005 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.004671 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.898329 B = 5992.399429 C = 7278.103777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.314 6.314 3 C 0.113 3.887 4 C -0.193 4.193 5 C -0.110 4.110 6 C -0.117 4.117 7 C -0.143 4.143 8 C -0.035 4.035 9 C -0.216 4.216 10 C 0.410 3.590 11 N -0.587 5.587 12 C 0.267 3.733 13 C -0.540 4.540 14 H 0.044 0.956 15 C 0.022 3.978 16 N -0.921 5.921 17 Si 0.956 3.044 18 H -0.274 1.274 19 H -0.277 1.277 20 H -0.275 1.275 21 C 0.156 3.844 22 C -0.118 4.118 23 C -0.100 4.100 24 C -0.114 4.114 25 C -0.110 4.110 26 N -0.533 5.533 27 C 0.132 3.868 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.165 0.835 35 H 0.125 0.875 36 H 0.016 0.984 37 H 0.024 0.976 38 H 0.268 0.732 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.052 0.948 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.631 5.401 -3.713 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.227 6.227 3 C 0.066 3.934 4 C -0.214 4.214 5 C -0.128 4.128 6 C -0.136 4.136 7 C -0.147 4.147 8 C -0.060 4.060 9 C -0.239 4.239 10 C 0.163 3.837 11 N -0.298 5.298 12 C 0.146 3.854 13 C -0.579 4.579 14 H 0.063 0.937 15 C -0.178 4.178 16 N -0.561 5.561 17 Si 0.781 3.219 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.200 1.200 21 C 0.052 3.948 22 C -0.157 4.157 23 C -0.138 4.138 24 C -0.151 4.151 25 C -0.149 4.149 26 N -0.254 5.254 27 C 0.008 3.992 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.143 0.857 36 H 0.034 0.966 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.070 0.930 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.664 4.237 -3.747 20.462 hybrid contribution 1.407 0.624 1.016 1.845 sum -18.257 4.861 -2.730 19.089 Atomic orbital electron populations 1.23326 0.77246 1.05131 1.02102 1.86144 1.22441 1.26031 1.88103 1.18808 0.89350 0.85880 0.99348 1.21344 1.00964 0.91348 1.07740 1.20809 0.94429 0.97572 1.00033 1.21025 0.94177 0.96989 1.01397 1.18670 0.94260 0.94147 1.07650 1.21472 0.92382 0.98631 0.93548 1.21640 1.01702 0.92788 1.07797 1.18703 0.88438 0.86691 0.89886 1.47128 1.06154 1.02581 1.73890 1.18965 0.74281 0.96649 0.95535 1.21648 0.91932 1.51290 0.93052 0.93742 1.25637 0.96197 0.94452 1.01558 1.69999 1.01044 1.50580 1.34433 0.85648 0.77257 0.78718 0.80286 1.19879 1.20164 1.19993 1.21601 0.93607 0.84019 0.95610 1.22568 0.96601 1.00610 0.95935 1.22237 0.96265 0.98688 0.96604 1.22397 0.95168 1.02526 0.95059 1.22231 0.96405 0.99267 0.97002 1.67830 1.03460 1.29973 1.24098 1.18370 0.91831 0.88885 1.00145 0.87048 0.91811 0.91549 0.82698 0.82676 0.83416 0.81758 0.85668 0.96626 0.95813 0.92281 0.91239 0.92298 0.92274 0.91153 0.91246 0.92271 0.88716 0.92951 0.94680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.31 -8.74 7.71 -92.27 -0.71 -9.45 16 3 C 0.11 3.38 6.73 22.79 0.15 3.53 16 4 C -0.19 -4.32 9.02 22.35 0.20 -4.11 16 5 C -0.11 -2.24 9.95 22.03 0.22 -2.02 16 6 C -0.12 -2.81 9.75 22.31 0.22 -2.59 16 7 C -0.14 -4.60 5.74 -21.27 -0.12 -4.72 16 8 C -0.04 -1.17 9.88 22.48 0.22 -0.95 16 9 C -0.22 -8.85 9.18 22.28 0.20 -8.65 16 10 C 0.41 17.85 6.24 133.63 0.83 18.68 16 11 N -0.59 -26.78 2.49 -679.94 -1.69 -28.48 16 12 C 0.27 13.82 4.97 85.63 0.43 14.25 16 13 C -0.54 -30.11 9.39 25.60 0.24 -29.87 16 14 H 0.04 2.57 7.81 -2.91 -0.02 2.55 16 15 C 0.02 1.19 5.46 84.65 0.46 1.65 16 16 N -0.92 -52.79 13.29 21.45 0.28 -52.50 16 17 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 C 0.16 6.30 3.36 45.71 0.15 6.46 16 22 C -0.12 -4.14 6.05 31.67 0.19 -3.95 16 23 C -0.10 -2.90 6.91 31.89 0.22 -2.68 16 24 C -0.11 -3.65 6.35 31.67 0.20 -3.45 16 25 C -0.11 -4.24 5.75 31.32 0.18 -4.06 16 26 N -0.53 -21.40 4.75 -185.91 -0.88 -22.28 16 27 C 0.13 4.75 6.61 40.33 0.27 5.02 16 28 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 0.87 7.66 -2.39 -0.02 0.86 16 30 H 0.07 0.87 7.66 -2.39 -0.02 0.86 16 31 H 0.16 2.38 6.25 -2.91 -0.02 2.37 16 32 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 35 H 0.13 5.53 5.96 -2.91 -0.02 5.51 16 36 H 0.02 0.86 7.92 -2.39 -0.02 0.84 16 37 H 0.02 1.29 5.93 -2.39 -0.01 1.27 16 38 H 0.27 14.52 8.31 -92.72 -0.77 13.75 16 39 H 0.07 2.89 7.82 -2.38 -0.02 2.87 16 40 H 0.06 2.30 6.12 -2.39 -0.01 2.29 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.09 3.26 4.11 -2.39 -0.01 3.25 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.03 1.56 7.01 -2.39 -0.02 1.54 16 Total: -1.00 -66.02 365.81 5.38 -60.64 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.98 Total: 22.18 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 5.38 Total: -16.09 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -2.29 Total: -103.26 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.71 Total: -9.45 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.02 5.38 -60.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.447 kcal (2) G-P(sol) polarization free energy of solvation -66.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds