Wall clock time and date at job start Tue Mar 31 2020 14:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40428 * 120.53414 * 283.12593 * 3 2 1 5 5 C 1.37327 * 118.55409 * 181.17976 * 4 3 2 6 6 C 1.39032 * 119.14733 * 358.39894 * 5 4 3 7 7 N 1.31648 * 121.53146 * 0.98410 * 6 5 4 8 8 C 1.32396 * 121.71355 * 0.15709 * 7 6 5 9 9 N 1.38398 * 119.94961 * 179.36245 * 8 7 6 10 10 C 1.46845 * 111.00275 * 236.04684 * 9 8 7 11 11 C 1.53029 * 109.52449 * 174.15959 * 10 9 8 12 12 C 1.53120 * 109.27873 * 59.18111 * 11 10 9 13 13 C 1.53115 * 109.15927 * 302.34335 * 12 11 10 14 14 H 1.09007 * 109.50452 * 297.71426 * 13 12 11 15 15 C 1.50698 * 109.50502 * 177.63608 * 13 12 11 16 16 H 1.08001 * 120.00448 * 240.00505 * 15 13 12 17 17 C 1.37877 * 120.00094 * 59.99893 * 15 13 12 18 18 N 1.31521 * 119.99998 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00185 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47016 * 89.99758 * 19 17 15 21 21 H 1.48499 * 109.47315 * 210.00035 * 19 17 15 22 22 H 1.48500 * 109.47271 * 330.00266 * 19 17 15 23 23 C 1.46842 * 111.00000 * 111.83377 * 9 8 7 24 24 C 1.50501 * 122.70949 * 178.11495 * 5 4 3 25 25 N 1.47070 * 111.05303 * 51.00215 * 24 5 4 26 26 C 1.46452 * 109.53580 * 266.48838 * 25 24 5 27 27 C 1.52767 * 110.22610 * 33.30093 * 26 25 24 28 28 C 1.50401 * 118.17909 * 2.63187 * 4 3 2 29 29 H 1.07994 * 119.23827 * 180.95378 * 6 5 4 30 30 H 1.08995 * 109.46224 * 294.17927 * 10 9 8 31 31 H 1.09004 * 109.46294 * 54.14273 * 10 9 8 32 32 H 1.09000 * 109.50384 * 179.12277 * 11 10 9 33 33 H 1.09004 * 109.50534 * 299.24004 * 11 10 9 34 34 H 1.08997 * 109.52328 * 62.25182 * 12 11 10 35 35 H 1.09006 * 109.51923 * 182.44050 * 12 11 10 36 36 H 0.97001 * 119.99912 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.46954 * 305.86082 * 23 9 8 38 38 H 1.09003 * 109.46294 * 65.82310 * 23 9 8 39 39 H 1.08998 * 109.16339 * 290.59361 * 24 5 4 40 40 H 1.09010 * 109.11946 * 171.37527 * 24 5 4 41 41 H 1.00900 * 111.00642 * 143.56312 * 25 24 5 42 42 H 1.08996 * 109.34648 * 273.07107 * 26 25 24 43 43 H 1.08997 * 109.35254 * 153.53266 * 26 25 24 44 44 H 1.09002 * 109.63378 * 181.03086 * 27 26 25 45 45 H 1.08995 * 109.63168 * 301.42414 * 27 26 25 46 46 H 1.09001 * 108.97956 * 87.27657 * 28 4 3 47 47 H 1.08995 * 109.26934 * 328.09999 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2815 -0.2737 1.1779 5 6 4.6537 -0.2382 1.1375 6 6 5.2888 0.0335 -0.0691 7 7 4.6051 0.2758 -1.1677 8 6 3.2812 0.2760 -1.1777 9 7 2.5992 0.5485 -2.3508 10 6 1.6718 1.6728 -2.1713 11 6 1.0451 2.0389 -3.5185 12 6 0.3005 0.8230 -4.0768 13 6 1.2782 -0.3480 -4.2086 14 1 2.0653 -0.0871 -4.9162 15 6 0.5409 -1.5659 -4.7028 16 1 0.5187 -2.4640 -4.1033 17 6 -0.1055 -1.5336 -5.9202 18 7 -0.0791 -0.4398 -6.6500 19 14 -1.0200 -3.0430 -6.5325 20 1 -2.4282 -2.9926 -6.0637 21 1 -0.9930 -3.0698 -8.0170 22 1 -0.3658 -4.2667 -6.0033 23 6 1.8982 -0.6449 -2.8413 24 6 5.5096 -0.4760 2.3524 25 7 5.1204 -1.7175 3.0380 26 6 4.1537 -1.4111 4.0947 27 6 3.2709 -0.2359 3.6782 28 6 2.5018 -0.6251 2.4151 29 1 6.3680 0.0465 -0.1059 30 1 0.8867 1.3878 -1.4710 31 1 2.2147 2.5322 -1.7778 32 1 0.3451 2.8632 -3.3823 33 1 1.8284 2.3373 -4.2153 34 1 -0.5079 0.5482 -3.3992 35 1 -0.1109 1.0661 -5.0565 36 1 -0.5335 -0.4173 -7.5067 37 1 2.6055 -1.4690 -2.9345 38 1 1.1120 -0.9192 -2.1379 39 1 5.3967 0.3627 3.0394 40 1 6.5530 -0.5489 2.0454 41 1 5.9279 -2.1919 3.4133 42 1 4.6879 -1.1548 5.0095 43 1 3.5287 -2.2852 4.2771 44 1 2.5678 -0.0044 4.4784 45 1 3.8932 0.6353 3.4742 46 1 2.3174 -1.6993 2.4248 47 1 1.5475 -0.0988 2.4004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:42 Heat of formation + Delta-G solvation = 89.576526 kcal Electronic energy + Delta-G solvation = -28303.082486 eV Core-core repulsion = 24679.143847 eV Total energy + Delta-G solvation = -3623.938639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26814 -39.05382 -37.44866 -36.46067 -33.98568 -33.85161 -32.32180 -31.61336 -30.11867 -29.80316 -26.46471 -25.85250 -25.00370 -24.47303 -23.05489 -21.55863 -20.96440 -20.52303 -18.85237 -18.45595 -17.55779 -17.00771 -16.18600 -15.97966 -15.78405 -14.93806 -14.71834 -14.60945 -14.27348 -14.16453 -14.04844 -13.45264 -13.31919 -13.13764 -12.99839 -12.72543 -12.67203 -12.48597 -12.38250 -12.16686 -12.04543 -11.78642 -11.73421 -11.35463 -11.26013 -10.92452 -10.75064 -10.69570 -10.13381 -9.88598 -9.80787 -9.53536 -9.48666 -9.20766 -8.93917 -8.78216 -8.63498 -8.30101 -7.91868 -5.96132 -4.02236 0.53826 1.09757 2.74449 3.01096 3.33661 3.39928 3.43249 3.62934 3.73758 3.86553 3.90413 4.27128 4.36663 4.47342 4.56910 4.63319 4.68978 4.83387 4.88894 5.02968 5.08920 5.21889 5.34115 5.35131 5.42333 5.54664 5.57577 5.60094 5.65500 5.81485 5.84879 5.91760 5.99957 6.11450 6.26145 6.36490 6.42484 6.50118 6.62864 6.68536 6.87717 6.95138 7.12244 7.30661 7.42618 7.52552 7.59914 7.76889 8.05804 8.13576 8.15726 8.45861 9.00297 9.61872 11.10024 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.003314 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.812383 B = 8446.778823 C = 8659.254043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.259 3.741 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.146 4.146 6 C 0.149 3.851 7 N -0.466 5.466 8 C 0.377 3.623 9 N -0.500 5.500 10 C 0.059 3.941 11 C -0.114 4.114 12 C -0.112 4.112 13 C 0.059 3.941 14 H 0.040 0.960 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.065 3.935 18 N -0.887 5.887 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.075 3.925 24 C 0.098 3.902 25 N -0.681 5.681 26 C 0.052 3.948 27 C -0.130 4.130 28 C -0.084 4.084 29 H 0.163 0.837 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.095 0.905 36 H 0.260 0.740 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.349 0.651 42 H 0.036 0.964 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.396 2.654 22.190 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.056 4.056 3 C -0.135 4.135 4 C 0.026 3.974 5 C -0.149 4.149 6 C -0.012 4.012 7 N -0.175 5.175 8 C 0.145 3.855 9 N -0.223 5.223 10 C -0.068 4.068 11 C -0.152 4.152 12 C -0.150 4.150 13 C 0.040 3.960 14 H 0.058 0.942 15 C -0.554 4.554 16 H 0.072 0.928 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.049 4.049 24 C -0.032 4.032 25 N -0.312 5.312 26 C -0.077 4.077 27 C -0.168 4.168 28 C -0.121 4.121 29 H 0.180 0.820 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.113 0.887 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.167 0.833 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.112 0.888 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.846 2.845 20.377 23.258 hybrid contribution -0.526 -0.836 1.569 1.854 sum 10.321 2.008 21.945 24.334 Atomic orbital electron populations 1.81297 1.11427 1.07917 1.07025 1.25033 0.92293 0.94331 0.93956 1.17859 0.86408 1.12044 0.97185 1.19690 0.92877 0.91477 0.93389 1.20273 0.92911 1.04531 0.97154 1.23055 1.00328 0.91454 0.86392 1.67499 1.06968 1.13966 1.29039 1.19912 0.89269 0.88599 0.87687 1.58759 1.30196 1.09066 1.24237 1.22349 0.93363 0.91564 0.99524 1.21670 0.99348 0.99449 0.94768 1.21687 0.97807 0.93671 1.01858 1.18674 0.94178 0.94110 0.89068 0.94191 1.21073 1.32752 0.97991 1.03534 0.92850 1.24904 0.96247 0.95991 0.96523 1.69886 1.43519 1.26618 1.12539 0.86609 0.80170 0.83435 0.77893 1.20762 1.21161 1.19917 1.22521 0.94997 0.88009 0.99420 1.20750 0.97157 0.92253 0.93040 1.60617 1.17751 1.23068 1.29725 1.22048 0.95000 0.98421 0.92279 1.21844 0.99144 0.98415 0.97356 1.20581 0.97642 1.03056 0.90833 0.81961 0.94321 0.91869 0.92927 0.91488 0.94980 0.88651 0.92996 0.91575 0.95323 0.91879 0.90120 0.83304 0.94594 0.90490 0.90309 0.90492 0.88820 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.60 17.78 41.83 0.74 -6.86 16 2 C 0.26 4.46 8.54 -22.48 -0.19 4.27 16 3 C -0.13 -1.95 5.52 -106.33 -0.59 -2.53 16 4 C 0.04 0.44 5.63 -104.27 -0.59 -0.15 16 5 C -0.15 -1.47 5.47 -104.76 -0.57 -2.04 16 6 C 0.15 1.67 10.73 -17.34 -0.19 1.49 16 7 N -0.47 -7.34 10.37 -12.08 -0.13 -7.46 16 8 C 0.38 6.53 5.69 -155.12 -0.88 5.64 16 9 N -0.50 -9.99 4.68 -173.02 -0.81 -10.80 16 10 C 0.06 1.12 4.93 -3.84 -0.02 1.10 16 11 C -0.11 -2.33 6.09 -26.65 -0.16 -2.49 16 12 C -0.11 -2.75 5.02 -26.61 -0.13 -2.88 16 13 C 0.06 1.51 2.26 -91.69 -0.21 1.30 16 14 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.51 -14.50 8.57 -34.44 -0.30 -14.80 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.83 5.30 -17.82 -0.09 1.73 16 18 N -0.89 -25.60 11.35 55.43 0.63 -24.98 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.08 1.70 4.35 -3.84 -0.02 1.69 16 24 C 0.10 0.63 5.73 -4.98 -0.03 0.60 16 25 N -0.68 -4.52 6.72 -115.50 -0.78 -5.29 16 26 C 0.05 0.31 6.27 -4.19 -0.03 0.28 16 27 C -0.13 -0.89 5.59 -26.89 -0.15 -1.04 16 28 C -0.08 -0.83 5.05 -28.07 -0.14 -0.98 16 29 H 0.16 1.22 7.82 -52.49 -0.41 0.81 16 30 H 0.04 0.76 4.56 -51.93 -0.24 0.52 16 31 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.10 2.57 6.15 -51.93 -0.32 2.25 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 37 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 38 H 0.03 0.66 6.00 -51.93 -0.31 0.35 16 39 H 0.06 0.35 5.74 -51.93 -0.30 0.05 16 40 H 0.08 0.36 7.73 -51.92 -0.40 -0.04 16 41 H 0.35 1.59 8.90 -39.29 -0.35 1.24 16 42 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.51 5.46 -51.93 -0.28 0.23 16 46 H 0.09 0.97 7.74 -51.93 -0.40 0.57 16 47 H 0.07 0.79 6.96 -51.93 -0.36 0.43 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -31.80 358.74 -10.95 -42.74 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.71 Total: -0.71 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -4.28 Total: -8.81 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.34 Total: -55.39 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.80 -10.95 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.321 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds