Wall clock time and date at job start Tue Mar 31 2020 14:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40428 * 120.53414 * 283.12593 * 3 2 1 5 5 C 1.37327 * 118.55409 * 181.17976 * 4 3 2 6 6 C 1.39032 * 119.14733 * 358.39894 * 5 4 3 7 7 N 1.31648 * 121.53146 * 0.98410 * 6 5 4 8 8 C 1.32396 * 121.71355 * 0.15709 * 7 6 5 9 9 N 1.38398 * 119.94961 * 179.36245 * 8 7 6 10 10 C 1.46845 * 111.00275 * 236.04684 * 9 8 7 11 11 C 1.53029 * 109.52449 * 174.15959 * 10 9 8 12 12 C 1.53120 * 109.27873 * 59.18111 * 11 10 9 13 13 C 1.53115 * 109.15927 * 302.34335 * 12 11 10 14 14 H 1.09007 * 109.50452 * 297.71426 * 13 12 11 15 15 C 1.50698 * 109.50502 * 177.63608 * 13 12 11 16 16 H 1.08001 * 120.00448 * 240.00505 * 15 13 12 17 17 C 1.37877 * 120.00094 * 59.99893 * 15 13 12 18 18 N 1.31521 * 119.99998 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00185 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47016 * 89.99758 * 19 17 15 21 21 H 1.48499 * 109.47315 * 210.00035 * 19 17 15 22 22 H 1.48500 * 109.47271 * 330.00266 * 19 17 15 23 23 C 1.46842 * 111.00000 * 111.83377 * 9 8 7 24 24 C 1.50501 * 122.70949 * 178.11495 * 5 4 3 25 25 N 1.47070 * 111.05303 * 51.00215 * 24 5 4 26 26 C 1.46452 * 109.53580 * 266.48838 * 25 24 5 27 27 C 1.52767 * 110.22610 * 33.30093 * 26 25 24 28 28 C 1.50401 * 118.17909 * 2.63187 * 4 3 2 29 29 H 1.07994 * 119.23827 * 180.95378 * 6 5 4 30 30 H 1.08995 * 109.46224 * 294.17927 * 10 9 8 31 31 H 1.09004 * 109.46294 * 54.14273 * 10 9 8 32 32 H 1.09000 * 109.50384 * 179.12277 * 11 10 9 33 33 H 1.09004 * 109.50534 * 299.24004 * 11 10 9 34 34 H 1.08997 * 109.52328 * 62.25182 * 12 11 10 35 35 H 1.09006 * 109.51923 * 182.44050 * 12 11 10 36 36 H 0.97001 * 119.99912 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.46954 * 305.86082 * 23 9 8 38 38 H 1.09003 * 109.46294 * 65.82310 * 23 9 8 39 39 H 1.08998 * 109.16339 * 290.59361 * 24 5 4 40 40 H 1.09010 * 109.11946 * 171.37527 * 24 5 4 41 41 H 1.00900 * 111.00642 * 143.56312 * 25 24 5 42 42 H 1.08996 * 109.34648 * 273.07107 * 26 25 24 43 43 H 1.08997 * 109.35254 * 153.53266 * 26 25 24 44 44 H 1.09002 * 109.63378 * 181.03086 * 27 26 25 45 45 H 1.08995 * 109.63168 * 301.42414 * 27 26 25 46 46 H 1.09001 * 108.97956 * 87.27657 * 28 4 3 47 47 H 1.08995 * 109.26934 * 328.09999 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2815 -0.2737 1.1779 5 6 4.6537 -0.2382 1.1375 6 6 5.2888 0.0335 -0.0691 7 7 4.6051 0.2758 -1.1677 8 6 3.2812 0.2760 -1.1777 9 7 2.5992 0.5485 -2.3508 10 6 1.6718 1.6728 -2.1713 11 6 1.0451 2.0389 -3.5185 12 6 0.3005 0.8230 -4.0768 13 6 1.2782 -0.3480 -4.2086 14 1 2.0653 -0.0871 -4.9162 15 6 0.5409 -1.5659 -4.7028 16 1 0.5187 -2.4640 -4.1033 17 6 -0.1055 -1.5336 -5.9202 18 7 -0.0791 -0.4398 -6.6500 19 14 -1.0200 -3.0430 -6.5325 20 1 -2.4282 -2.9926 -6.0637 21 1 -0.9930 -3.0698 -8.0170 22 1 -0.3658 -4.2667 -6.0033 23 6 1.8982 -0.6449 -2.8413 24 6 5.5096 -0.4760 2.3524 25 7 5.1204 -1.7175 3.0380 26 6 4.1537 -1.4111 4.0947 27 6 3.2709 -0.2359 3.6782 28 6 2.5018 -0.6251 2.4151 29 1 6.3680 0.0465 -0.1059 30 1 0.8867 1.3878 -1.4710 31 1 2.2147 2.5322 -1.7778 32 1 0.3451 2.8632 -3.3823 33 1 1.8284 2.3373 -4.2153 34 1 -0.5079 0.5482 -3.3992 35 1 -0.1109 1.0661 -5.0565 36 1 -0.5335 -0.4173 -7.5067 37 1 2.6055 -1.4690 -2.9345 38 1 1.1120 -0.9192 -2.1379 39 1 5.3967 0.3627 3.0394 40 1 6.5530 -0.5489 2.0454 41 1 5.9279 -2.1919 3.4133 42 1 4.6879 -1.1548 5.0095 43 1 3.5287 -2.2852 4.2771 44 1 2.5678 -0.0044 4.4784 45 1 3.8932 0.6353 3.4742 46 1 2.3174 -1.6993 2.4248 47 1 1.5475 -0.0988 2.4004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:42 Heat of formation + Delta-G solvation = 67.936945 kcal Electronic energy + Delta-G solvation = -28304.020849 eV Core-core repulsion = 24679.143847 eV Total energy + Delta-G solvation = -3624.877002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.37371 -40.23557 -38.45808 -37.86349 -35.73054 -34.72715 -33.90441 -32.60527 -31.90133 -31.07329 -27.25879 -27.08895 -26.76330 -25.48180 -24.49233 -23.37497 -21.84212 -21.38357 -20.61364 -19.53392 -18.80184 -18.35651 -17.68635 -16.84499 -16.71963 -16.50520 -16.12288 -15.83748 -15.60123 -15.29520 -15.02817 -14.77030 -14.66751 -14.44091 -14.36178 -14.18805 -13.89003 -13.86050 -13.78486 -13.59031 -13.28447 -12.89157 -12.75025 -12.66332 -12.62638 -12.34765 -11.98666 -11.93191 -11.89658 -11.84718 -11.54821 -11.13962 -10.87590 -10.79395 -10.53283 -10.45253 -9.85897 -9.44007 -9.26314 -8.13311 -6.27714 -0.56426 0.09097 1.37640 1.37996 1.41173 1.48688 1.79484 2.30210 2.45063 2.62623 2.66302 3.13582 3.31920 3.42592 3.60538 3.77952 3.88322 3.97976 3.98704 4.05413 4.08638 4.13139 4.25514 4.27993 4.36427 4.48813 4.50584 4.63571 4.67878 4.74667 4.79265 4.83986 4.84870 4.90764 4.96137 4.98997 5.08842 5.10982 5.23369 5.31781 5.38277 5.48961 5.56265 5.70827 5.93281 6.04890 6.05386 6.07875 6.24873 6.32218 6.62685 6.81083 6.99576 7.39667 8.91764 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.018665 B = 0.003314 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.812383 B = 8446.778823 C = 8659.254043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.274 3.726 3 C -0.141 4.141 4 C 0.035 3.965 5 C -0.125 4.125 6 C 0.155 3.845 7 N -0.492 5.492 8 C 0.348 3.652 9 N -0.508 5.508 10 C 0.064 3.936 11 C -0.108 4.108 12 C -0.102 4.102 13 C 0.059 3.941 14 H 0.007 0.993 15 C -0.541 4.541 16 H 0.046 0.954 17 C 0.019 3.981 18 N -0.911 5.911 19 Si 0.954 3.046 20 H -0.278 1.278 21 H -0.277 1.277 22 H -0.269 1.269 23 C 0.095 3.905 24 C 0.097 3.903 25 N -0.697 5.697 26 C 0.053 3.947 27 C -0.124 4.124 28 C -0.083 4.083 29 H 0.207 0.793 30 H 0.033 0.967 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.014 0.986 35 H 0.067 0.933 36 H 0.263 0.737 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.363 0.637 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.835 2.541 24.946 29.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.040 4.040 3 C -0.150 4.150 4 C 0.025 3.975 5 C -0.128 4.128 6 C -0.006 4.006 7 N -0.201 5.201 8 C 0.117 3.883 9 N -0.230 5.230 10 C -0.063 4.063 11 C -0.145 4.145 12 C -0.140 4.140 13 C 0.040 3.960 14 H 0.025 0.975 15 C -0.579 4.579 16 H 0.064 0.936 17 C -0.181 4.181 18 N -0.549 5.549 19 Si 0.779 3.221 20 H -0.203 1.203 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.031 4.031 24 C -0.032 4.032 25 N -0.330 5.330 26 C -0.075 4.075 27 C -0.162 4.162 28 C -0.120 4.120 29 H 0.223 0.777 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.100 0.900 40 H 0.130 0.870 41 H 0.184 0.816 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.306 2.730 23.162 26.852 hybrid contribution -1.148 -0.820 0.801 1.623 sum 12.158 1.909 23.963 26.939 Atomic orbital electron populations 1.81281 1.12646 1.09681 1.08445 1.25411 0.92743 0.93112 0.92713 1.17916 0.85294 1.13693 0.98111 1.20024 0.93914 0.90773 0.92809 1.20789 0.92280 1.01258 0.98478 1.23816 1.02009 0.89344 0.85440 1.67457 1.06200 1.15053 1.31434 1.19697 0.89960 0.91567 0.87051 1.58548 1.29834 1.07931 1.26683 1.22309 0.93482 0.92292 0.98225 1.21580 0.99345 0.98133 0.95476 1.21453 0.97311 0.95148 1.00068 1.18550 0.93409 0.93940 0.90107 0.97458 1.21395 1.33654 0.98683 1.04176 0.93592 1.25677 0.96912 0.98888 0.96605 1.70011 1.43930 1.28237 1.12762 0.85619 0.78811 0.79995 0.77636 1.20349 1.20185 1.19371 1.22061 0.94431 0.89175 0.97458 1.20869 0.97688 0.92989 0.91693 1.60504 1.18703 1.23346 1.30408 1.22026 0.94858 0.97680 0.92984 1.21859 0.99374 0.99093 0.95854 1.20620 0.97389 1.02387 0.91640 0.77668 0.94911 0.89247 0.90606 0.91785 0.96746 0.91428 0.92794 0.92603 0.96435 0.89978 0.87043 0.81646 0.92305 0.91126 0.89015 0.89715 0.89476 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -17.57 17.78 19.00 0.34 -17.23 16 2 C 0.27 9.75 8.54 88.33 0.75 10.51 16 3 C -0.14 -4.35 5.52 -20.97 -0.12 -4.46 16 4 C 0.04 0.79 5.63 -19.64 -0.11 0.68 16 5 C -0.13 -2.10 5.47 -19.95 -0.11 -2.21 16 6 C 0.15 2.96 10.73 84.91 0.91 3.87 16 7 N -0.49 -14.83 10.37 -192.14 -1.99 -16.83 16 8 C 0.35 12.03 5.69 133.58 0.76 12.79 16 9 N -0.51 -20.79 4.68 -701.31 -3.28 -24.07 16 10 C 0.06 2.45 4.93 86.32 0.43 2.87 16 11 C -0.11 -4.48 6.09 30.64 0.19 -4.29 16 12 C -0.10 -5.23 5.02 30.67 0.15 -5.08 16 13 C 0.06 3.21 2.26 -11.49 -0.03 3.18 16 14 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 15 C -0.54 -31.85 8.57 25.60 0.22 -31.63 16 16 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 17 C 0.02 1.08 5.30 84.65 0.45 1.53 16 18 N -0.91 -54.32 11.35 21.45 0.24 -54.08 16 19 Si 0.95 45.63 29.54 68.60 2.03 47.66 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 23 C 0.09 4.50 4.35 86.33 0.38 4.88 16 24 C 0.10 0.77 5.73 85.46 0.49 1.26 16 25 N -0.70 -6.33 6.72 -519.35 -3.49 -9.82 16 26 C 0.05 0.43 6.27 86.31 0.54 0.98 16 27 C -0.12 -1.31 5.59 30.49 0.17 -1.14 16 28 C -0.08 -1.54 5.05 29.73 0.15 -1.39 16 29 H 0.21 2.02 7.82 -2.91 -0.02 2.00 16 30 H 0.03 1.31 4.56 -2.39 -0.01 1.30 16 31 H 0.09 2.96 8.10 -2.38 -0.02 2.94 16 32 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 3.84 6.15 -2.38 -0.01 3.82 16 36 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.06 2.69 8.10 -2.39 -0.02 2.67 16 38 H 0.02 0.86 6.00 -2.39 -0.01 0.85 16 39 H 0.08 0.44 5.74 -2.39 -0.01 0.43 16 40 H 0.11 0.29 7.73 -2.38 -0.02 0.27 16 41 H 0.36 1.67 8.90 -89.69 -0.80 0.87 16 42 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.07 0.69 8.05 -2.39 -0.02 0.67 16 44 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.08 0.78 5.46 -2.39 -0.01 0.76 16 46 H 0.09 1.73 7.74 -2.39 -0.02 1.71 16 47 H 0.06 1.27 6.96 -2.39 -0.02 1.25 16 Total: -1.00 -73.73 358.74 -0.72 -74.45 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.21 Total: 7.58 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 5.23 Total: -7.66 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -8.18 Total: -122.03 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.73 -0.72 -74.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.385 kcal (2) G-P(sol) polarization free energy of solvation -73.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds