Wall clock time and date at job start Tue Mar 31 2020 14:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.40398 * 120.52865 * 206.78678 * 3 2 1 5 5 C 1.37456 * 118.51233 * 181.37488 * 4 3 2 6 6 C 1.38980 * 119.15536 * 358.07620 * 5 4 3 7 7 N 1.31653 * 121.53193 * 1.19814 * 6 5 4 8 8 C 1.32388 * 121.71089 * 0.20484 * 7 6 5 9 9 N 1.38407 * 119.93725 * 179.17786 * 8 7 6 10 10 C 1.46848 * 110.99867 * 272.44114 * 9 8 7 11 11 C 1.53040 * 109.52237 * 185.84213 * 10 9 8 12 12 C 1.53115 * 109.27587 * 300.82353 * 11 10 9 13 13 C 1.53123 * 109.16448 * 57.65819 * 12 11 10 14 14 H 1.08992 * 109.50370 * 62.28016 * 13 12 11 15 15 C 1.50701 * 109.50426 * 182.40411 * 13 12 11 16 16 H 1.08001 * 119.99847 * 119.80321 * 15 13 12 17 17 C 1.37878 * 119.99701 * 299.79515 * 15 13 12 18 18 N 1.31510 * 120.00296 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99755 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47263 * 60.00189 * 19 17 15 21 21 H 1.48498 * 109.47457 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.47079 * 300.00389 * 19 17 15 23 23 C 1.46841 * 111.00182 * 36.65772 * 9 8 7 24 24 C 1.50521 * 122.58082 * 177.72273 * 5 4 3 25 25 N 1.47090 * 111.18018 * 50.76690 * 24 5 4 26 26 C 1.46460 * 109.40868 * 266.41860 * 25 24 5 27 27 C 1.52756 * 110.25862 * 33.31137 * 26 25 24 28 28 C 1.50595 * 118.33302 * 2.27649 * 4 3 2 29 29 H 1.07996 * 119.23018 * 181.17849 * 6 5 4 30 30 H 1.08997 * 109.46447 * 305.85916 * 10 9 8 31 31 H 1.09006 * 109.45879 * 65.83026 * 10 9 8 32 32 H 1.08994 * 109.50113 * 180.88562 * 11 10 9 33 33 H 1.09000 * 109.50094 * 60.76389 * 11 10 9 34 34 H 1.08995 * 109.52562 * 297.74772 * 12 11 10 35 35 H 1.09007 * 109.57644 * 177.59040 * 12 11 10 36 36 H 0.97000 * 120.00191 * 179.97438 * 18 17 15 37 37 H 1.09008 * 109.46038 * 294.17408 * 23 9 8 38 38 H 1.08997 * 109.46343 * 54.13894 * 23 9 8 39 39 H 1.08997 * 109.13666 * 171.20486 * 24 5 4 40 40 H 1.08998 * 109.13834 * 290.32786 * 24 5 4 41 41 H 1.00899 * 111.00383 * 29.25399 * 25 24 5 42 42 H 1.08992 * 109.33853 * 153.55468 * 26 25 24 43 43 H 1.09000 * 109.33753 * 273.07452 * 26 25 24 44 44 H 1.09000 * 109.68354 * 181.01848 * 27 26 25 45 45 H 1.08994 * 109.68571 * 301.58587 * 27 26 25 46 46 H 1.08995 * 109.18032 * 88.03009 * 28 4 3 47 47 H 1.09010 * 109.12861 * 328.78508 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2806 1.0805 0.5450 5 6 4.6541 1.0512 0.4974 6 6 5.2891 -0.0579 -0.0486 7 7 4.6056 -1.0693 -0.5416 8 6 3.2817 -1.0785 -0.5456 9 7 2.6000 -2.1536 -1.0888 10 6 2.3910 -1.9699 -2.5307 11 6 1.5120 -3.1014 -3.0683 12 6 2.1965 -4.4445 -2.7998 13 6 2.4464 -4.5896 -1.2961 14 1 1.4933 -4.5912 -0.7673 15 6 3.1731 -5.8825 -1.0292 16 1 4.1455 -5.8684 -0.5596 17 6 2.5963 -7.0834 -1.3845 18 7 1.4123 -7.1006 -1.9566 19 14 3.4967 -8.6862 -1.0530 20 1 3.7424 -8.8236 0.4050 21 1 2.6698 -9.8255 -1.5257 22 1 4.7942 -8.6836 -1.7756 23 6 3.2983 -3.4149 -0.8099 24 6 5.5071 2.1812 1.0084 25 7 5.1175 2.5659 2.3736 26 6 4.1510 3.6646 2.3125 27 6 3.2697 3.5255 1.0725 28 6 2.5023 2.2066 1.1727 29 1 6.3684 -0.0907 -0.0691 30 1 1.8998 -1.0131 -2.7075 31 1 3.3537 -1.9837 -3.0419 32 1 1.3700 -2.9735 -4.1414 33 1 0.5441 -3.0797 -2.5674 34 1 3.1469 -4.4818 -3.3322 35 1 1.5549 -5.2564 -3.1424 36 1 1.0067 -7.9454 -2.2068 37 1 4.2568 -3.4219 -1.3291 38 1 3.4661 -3.5075 0.2631 39 1 6.5512 1.8684 1.0095 40 1 5.3935 3.0413 0.3486 41 1 4.7380 1.7781 2.8769 42 1 3.5249 3.6446 3.2044 43 1 4.6855 4.6137 2.2707 44 1 2.5665 4.3570 1.0267 45 1 3.8925 3.5209 0.1781 46 1 2.3224 1.9759 2.2226 47 1 1.5459 2.3091 0.6598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:45 Heat of formation + Delta-G solvation = 55.625355 kcal Electronic energy + Delta-G solvation = -28003.247094 eV Core-core repulsion = 24377.836222 eV Total energy + Delta-G solvation = -3625.410872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31568 -40.23182 -38.47553 -37.77192 -35.68721 -34.58339 -33.89109 -32.51551 -31.86159 -31.09770 -27.21405 -26.91716 -26.87370 -25.26145 -24.66334 -23.29649 -22.10888 -21.29898 -20.48503 -19.58593 -18.81245 -18.19431 -17.63702 -17.13131 -16.60831 -16.31207 -16.11744 -15.69305 -15.37734 -15.14591 -14.93725 -14.69929 -14.57324 -14.43811 -14.35989 -14.19167 -14.03458 -13.81835 -13.71099 -13.52127 -13.33035 -12.85530 -12.76267 -12.67427 -12.59561 -12.42386 -12.01378 -11.97189 -11.83460 -11.65269 -11.49993 -11.14108 -10.88577 -10.76387 -10.58676 -10.42094 -10.16737 -9.59518 -9.18363 -8.10186 -6.24720 -0.52734 -0.00495 1.41497 1.43110 1.50715 1.57749 1.87881 2.37970 2.52563 2.66077 2.74246 3.17203 3.37439 3.49138 3.53117 3.66511 3.72454 3.96284 4.01227 4.08409 4.09754 4.12237 4.26531 4.35519 4.48212 4.55943 4.59223 4.61914 4.71430 4.76130 4.79193 4.85113 4.91505 4.97265 5.01400 5.06370 5.09164 5.18896 5.23945 5.27519 5.40238 5.46307 5.60269 5.71635 5.97613 6.05015 6.10653 6.20177 6.35669 6.40669 6.43662 6.81868 6.86819 7.43351 8.94786 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.003147 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.557372 B = 8895.777375 C = 9578.703339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.288 3.712 3 C -0.092 4.092 4 C 0.029 3.971 5 C -0.170 4.170 6 C 0.163 3.837 7 N -0.534 5.534 8 C 0.342 3.658 9 N -0.507 5.507 10 C 0.080 3.920 11 C -0.110 4.110 12 C -0.102 4.102 13 C 0.053 3.947 14 H -0.009 1.009 15 C -0.536 4.536 16 H 0.054 0.946 17 C 0.015 3.985 18 N -0.916 5.916 19 Si 0.957 3.043 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.268 1.268 23 C 0.099 3.901 24 C 0.100 3.900 25 N -0.675 5.675 26 C 0.047 3.953 27 C -0.148 4.148 28 C -0.092 4.092 29 H 0.197 0.803 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.062 0.938 36 H 0.261 0.739 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.343 0.657 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.560 24.716 4.973 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.027 4.027 3 C -0.100 4.100 4 C 0.018 3.982 5 C -0.174 4.174 6 C 0.001 3.999 7 N -0.246 5.246 8 C 0.112 3.888 9 N -0.228 5.228 10 C -0.046 4.046 11 C -0.147 4.147 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.009 0.991 15 C -0.574 4.574 16 H 0.072 0.928 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.782 3.218 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.027 4.027 24 C -0.030 4.030 25 N -0.302 5.302 26 C -0.083 4.083 27 C -0.187 4.187 28 C -0.129 4.129 29 H 0.213 0.787 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.160 0.840 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.113 0.887 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.172 24.243 4.872 26.043 hybrid contribution -0.401 -1.539 -0.293 1.617 sum 7.771 22.704 4.579 24.430 Atomic orbital electron populations 1.81192 1.12767 1.09160 1.09678 1.25268 0.92335 0.92235 0.92896 1.16750 0.84981 0.98536 1.09702 1.20118 0.93486 0.92628 0.91956 1.21402 0.92719 0.99987 1.03259 1.23633 1.01818 0.86236 0.88189 1.67955 1.07545 1.29721 1.19364 1.19949 0.87591 0.89232 0.92017 1.59670 1.46446 1.01500 1.15168 1.22036 0.99418 0.99161 0.83945 1.21599 0.98120 0.94707 1.00306 1.21462 0.98641 0.95834 0.98118 1.18609 0.93684 0.91293 0.92995 0.99130 1.21414 1.04097 0.91969 1.39928 0.92800 1.25731 0.95595 1.02314 0.94773 1.70029 1.16641 1.26872 1.42005 0.85637 0.78679 0.78823 0.78678 1.19744 1.20982 1.19321 1.21861 0.95415 0.86432 0.98980 1.21193 0.98025 0.93907 0.89861 1.61480 1.42695 1.12117 1.13942 1.22214 0.93121 0.95894 0.97047 1.22330 0.99864 0.95574 1.00892 1.20798 0.98149 0.92611 1.01376 0.78652 0.90429 0.93383 0.90068 0.93659 0.94916 0.91965 0.93003 0.93925 0.93404 0.87555 0.87890 0.84011 0.90646 0.89542 0.89131 0.89825 0.88733 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.12 18.54 19.00 0.35 -15.77 16 2 C 0.29 9.16 13.16 88.33 1.16 10.32 16 3 C -0.09 -2.52 5.78 -20.98 -0.12 -2.64 16 4 C 0.03 0.54 5.60 -19.56 -0.11 0.43 16 5 C -0.17 -2.51 5.16 -19.93 -0.10 -2.62 16 6 C 0.16 3.00 10.73 84.90 0.91 3.91 16 7 N -0.53 -15.24 9.24 -192.17 -1.78 -17.01 16 8 C 0.34 10.97 5.56 133.58 0.74 11.71 16 9 N -0.51 -19.56 4.00 -701.27 -2.80 -22.36 16 10 C 0.08 2.84 5.39 86.33 0.47 3.30 16 11 C -0.11 -4.37 6.09 30.65 0.19 -4.18 16 12 C -0.10 -4.99 5.03 30.67 0.15 -4.84 16 13 C 0.05 2.79 2.26 -11.48 -0.03 2.76 16 14 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 15 C -0.54 -30.28 8.56 25.60 0.22 -30.06 16 16 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 17 C 0.01 0.83 5.30 84.66 0.45 1.28 16 18 N -0.92 -54.16 11.36 21.45 0.24 -53.92 16 19 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 23 C 0.10 4.43 4.15 86.33 0.36 4.79 16 24 C 0.10 0.87 5.83 85.46 0.50 1.37 16 25 N -0.68 -6.54 6.95 -519.28 -3.61 -10.15 16 26 C 0.05 0.35 6.25 86.31 0.54 0.89 16 27 C -0.15 -1.26 5.62 30.49 0.17 -1.09 16 28 C -0.09 -1.31 5.03 29.79 0.15 -1.16 16 29 H 0.20 2.17 7.83 -2.91 -0.02 2.15 16 30 H 0.08 2.47 8.10 -2.39 -0.02 2.45 16 31 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 3.42 6.16 -2.38 -0.01 3.41 16 36 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.04 1.90 7.80 -2.38 -0.02 1.88 16 38 H 0.05 2.19 8.10 -2.39 -0.02 2.17 16 39 H 0.11 0.65 7.74 -2.39 -0.02 0.63 16 40 H 0.10 0.69 5.73 -2.39 -0.01 0.68 16 41 H 0.34 3.72 8.39 -89.69 -0.75 2.97 16 42 H 0.08 0.52 8.03 -2.39 -0.02 0.50 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 0.70 5.45 -2.39 -0.01 0.69 16 46 H 0.09 1.25 7.71 -2.39 -0.02 1.24 16 47 H 0.07 1.19 6.94 -2.38 -0.02 1.17 16 Total: -1.00 -68.92 367.49 0.33 -68.59 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.25 Total: 10.16 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.65 Total: -5.83 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -7.59 Total: -119.21 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -68.92 0.33 -68.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.217 kcal (2) G-P(sol) polarization free energy of solvation -68.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds