Wall clock time and date at job start Tue Mar 31 2020 14:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00628 * 2 1 4 4 H 1.48502 * 109.47349 * 270.00268 * 3 2 1 5 5 H 1.48507 * 109.46722 * 29.99731 * 3 2 1 6 6 H 1.48499 * 109.47235 * 149.99540 * 3 2 1 7 7 C 1.37877 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00118 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49885 * 299.92041 * 9 7 2 11 11 C 1.53122 * 109.50336 * 59.99401 * 9 7 2 12 12 C 1.53121 * 109.15890 * 177.63465 * 11 9 7 13 13 C 1.53039 * 109.28062 * 302.34560 * 12 11 9 14 14 N 1.46850 * 109.51999 * 59.18275 * 13 12 11 15 15 C 1.38319 * 110.99960 * 174.15875 * 14 13 12 16 16 N 1.32990 * 120.83898 * 236.04220 * 15 14 13 17 17 C 1.32084 * 121.03161 * 179.97438 * 16 15 14 18 18 C 1.50704 * 118.64022 * 179.72171 * 17 16 15 19 19 C 1.53776 * 113.61398 * 219.13721 * 18 17 16 20 20 C 1.53953 * 87.02143 * 220.04977 * 19 18 17 21 21 C 1.53774 * 113.61225 * 121.53061 * 18 17 16 22 22 N 1.31550 * 122.71737 * 0.02562 * 17 16 15 23 23 C 1.33200 * 120.70890 * 359.97438 * 22 17 16 24 24 N 1.36779 * 134.29517 * 179.97438 * 23 22 17 25 25 H 0.96992 * 124.99186 * 0.02562 * 24 23 22 26 26 C 1.37100 * 110.02014 * 180.02562 * 24 23 22 27 27 C 1.34304 * 109.81520 * 0.02562 * 26 24 23 28 28 C 1.40301 * 120.83845 * 56.02253 * 15 14 13 29 29 C 1.46855 * 111.19714 * 298.25414 * 14 13 12 30 30 H 0.97004 * 119.99445 * 359.97438 * 1 2 3 31 31 H 1.09008 * 109.51992 * 57.73753 * 11 9 7 32 32 H 1.08992 * 109.52510 * 297.54156 * 11 9 7 33 33 H 1.08999 * 109.49820 * 182.40917 * 12 11 9 34 34 H 1.08998 * 109.50063 * 62.28905 * 12 11 9 35 35 H 1.09000 * 109.46358 * 299.16999 * 13 12 11 36 36 H 1.08994 * 109.45435 * 179.18602 * 13 12 11 37 37 H 1.09004 * 112.85042 * 350.33942 * 18 17 16 38 38 H 1.08999 * 113.61640 * 334.57290 * 19 18 17 39 39 H 1.09009 * 113.61087 * 105.47227 * 19 18 17 40 40 H 1.09006 * 113.53861 * 270.81503 * 20 19 18 41 41 H 1.08991 * 113.74404 * 139.94497 * 20 19 18 42 42 H 1.08999 * 113.61793 * 254.52597 * 21 18 17 43 43 H 1.09001 * 113.61953 * 25.35072 * 21 18 17 44 44 H 1.08008 * 125.09743 * 180.02562 * 26 24 23 45 45 H 1.07993 * 126.60132 * 179.97438 * 27 26 24 46 46 H 1.08997 * 109.46003 * 181.76139 * 29 14 13 47 47 H 1.08999 * 109.46127 * 301.72831 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6248 -2.5578 0.8908 11 6 0.3706 -2.5813 -1.2497 12 6 -0.3459 -3.9343 -1.2719 13 6 0.6935 -5.0571 -1.2390 14 7 1.5094 -4.9350 -0.0241 15 6 2.3726 -6.0083 0.1033 16 7 2.3658 -6.7623 1.1987 17 6 3.1880 -7.7884 1.3241 18 6 3.1389 -8.6028 2.5912 19 6 4.5233 -9.0469 3.0921 20 6 3.8740 -10.3980 3.4430 21 6 2.8310 -10.0908 2.3555 22 7 4.0521 -8.1253 0.3911 23 6 4.1344 -7.4309 -0.7425 24 7 4.9057 -7.5275 -1.8680 25 1 5.5876 -8.2004 -2.0189 26 6 4.5732 -6.5332 -2.7515 27 6 3.5933 -5.7740 -2.2349 28 6 3.2771 -6.3291 -0.9201 29 6 2.2440 -3.6635 -0.0034 30 1 -0.4849 0.8401 0.0004 31 1 0.9922 -2.4836 -2.1398 32 1 -0.3668 -1.7789 -1.2293 33 1 -0.9410 -4.0160 -2.1814 34 1 -0.9970 -4.0155 -0.4016 35 1 1.3357 -4.9834 -2.1166 36 1 0.1861 -6.0217 -1.2401 37 1 2.5206 -8.1461 3.3642 38 1 5.2722 -9.1142 2.3030 39 1 4.8722 -8.4901 3.9619 40 1 3.4577 -10.4325 4.4499 41 1 4.5020 -11.2591 3.2149 42 1 1.8157 -10.3757 2.6314 43 1 3.1150 -10.4439 1.3641 44 1 5.0308 -6.3830 -3.7183 45 1 3.1282 -4.9180 -2.7011 46 1 2.8627 -3.6162 0.8927 47 1 2.8788 -3.5965 -0.8868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166741368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:26 Heat of formation + Delta-G solvation = 112.146734 kcal Electronic energy + Delta-G solvation = -28075.456031 eV Core-core repulsion = 24452.496110 eV Total energy + Delta-G solvation = -3622.959922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.92900 -39.43102 -38.72817 -37.35756 -34.31566 -32.62470 -31.42679 -30.71582 -29.91994 -29.20893 -26.07554 -25.67405 -24.97964 -24.40159 -22.39889 -21.96832 -21.42043 -20.78921 -19.57511 -19.15091 -18.17959 -17.04458 -16.46843 -15.83979 -15.56890 -15.42635 -15.04949 -14.93764 -14.51611 -14.17129 -13.56842 -13.50515 -13.30213 -13.22512 -12.63648 -12.60228 -12.51093 -12.48429 -12.44278 -11.86042 -11.74886 -11.09811 -10.95554 -10.79609 -10.74934 -10.69296 -10.49330 -10.40355 -10.34562 -10.13785 -9.83899 -9.53258 -9.27322 -9.06027 -8.94824 -8.73926 -8.31557 -8.05765 -7.83849 -5.97678 -4.03925 0.86046 1.48671 2.57850 2.61440 3.31096 3.38261 3.41399 3.71803 3.88536 4.19343 4.44516 4.54977 4.62285 4.64544 4.74138 4.81029 4.92088 5.09274 5.22840 5.32638 5.49780 5.55736 5.60958 5.63711 5.71142 5.75992 5.79477 5.81786 5.89142 6.02406 6.08523 6.10617 6.21664 6.32700 6.40534 6.43863 6.45487 6.64876 6.70038 6.74708 6.91102 7.01073 7.15477 7.33971 7.44868 7.49757 7.75494 7.82739 8.06944 8.15534 8.45089 8.50892 8.99374 9.60304 11.08363 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014867 B = 0.003372 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.911183 B = 8302.580948 C = 8815.318153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.057 3.943 10 H 0.038 0.962 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.071 3.929 14 N -0.500 5.500 15 C 0.431 3.569 16 N -0.522 5.522 17 C 0.359 3.641 18 C -0.043 4.043 19 C -0.123 4.123 20 C -0.139 4.139 21 C -0.122 4.122 22 N -0.541 5.541 23 C 0.324 3.676 24 N -0.576 5.576 25 H 0.418 0.582 26 C 0.044 3.956 27 C -0.163 4.163 28 C -0.242 4.242 29 C 0.082 3.918 30 H 0.260 0.740 31 H 0.032 0.968 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.181 0.819 45 H 0.156 0.844 46 H 0.060 0.940 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.758 -18.674 -2.785 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.038 3.962 10 H 0.056 0.944 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.055 4.055 14 N -0.223 5.223 15 C 0.186 3.814 16 N -0.238 5.238 17 C 0.089 3.911 18 C -0.063 4.063 19 C -0.162 4.162 20 C -0.177 4.177 21 C -0.160 4.160 22 N -0.262 5.262 23 C 0.083 3.917 24 N -0.184 5.184 25 H 0.256 0.744 26 C -0.080 4.080 27 C -0.189 4.189 28 C -0.256 4.256 29 C -0.043 4.043 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.198 0.802 45 H 0.174 0.826 46 H 0.078 0.922 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 7.374 -19.153 -1.636 20.589 hybrid contribution 1.388 1.158 -1.639 2.440 sum 8.762 -17.995 -3.274 20.281 Atomic orbital electron populations 1.69887 1.05808 1.26374 1.50461 1.24909 0.94827 0.98900 0.95062 0.86621 0.79916 0.83604 0.78001 1.20772 1.21227 1.19980 1.21087 0.92823 0.90445 1.50985 0.92807 1.18691 0.92513 0.89786 0.95235 0.94386 1.21679 1.00107 0.94708 0.98391 1.21704 0.96998 0.96038 1.00735 1.22160 0.95221 0.99382 0.88773 1.58691 1.23020 1.00594 1.39951 1.19711 0.86288 0.89468 0.85931 1.68101 1.24802 1.06597 1.24334 1.22470 0.85812 0.89622 0.93231 1.21407 0.99708 0.93497 0.91707 1.22970 0.95750 0.96280 1.01173 1.22819 0.98310 0.97640 0.98886 1.22895 0.99497 0.93741 0.99906 1.66926 1.25849 1.32757 1.00638 1.18316 0.92078 0.92845 0.88441 1.41466 1.34383 1.29085 1.13470 0.74426 1.21929 0.99830 0.90421 0.95801 1.21793 1.00812 1.02484 0.93834 1.21364 1.03092 1.01481 0.99614 1.22418 0.96406 0.85938 0.99559 0.93005 0.94908 0.88780 0.92909 0.91713 0.94138 0.92393 0.86520 0.88936 0.91319 0.90035 0.91303 0.91156 0.89674 0.80211 0.82637 0.92187 0.94907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.93 11.35 55.43 0.63 -24.30 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.94 8.57 -34.44 -0.29 -14.24 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.11 -2.53 5.02 -26.61 -0.13 -2.67 16 12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 13 C 0.07 1.29 5.05 -3.83 -0.02 1.27 16 14 N -0.50 -10.09 4.69 -172.90 -0.81 -10.90 16 15 C 0.43 8.24 5.73 -154.74 -0.89 7.35 16 16 N -0.52 -9.89 10.35 -9.83 -0.10 -10.00 16 17 C 0.36 5.83 6.88 -157.15 -1.08 4.75 16 18 C -0.04 -0.54 4.14 -90.96 -0.38 -0.92 16 19 C -0.12 -1.31 7.57 -25.83 -0.20 -1.50 16 20 C -0.14 -1.20 8.09 -25.83 -0.21 -1.41 16 21 C -0.12 -1.27 7.60 -25.92 -0.20 -1.47 16 22 N -0.54 -8.40 9.24 -10.04 -0.09 -8.49 16 23 C 0.32 4.96 8.48 -155.85 -1.32 3.63 16 24 N -0.58 -6.39 6.03 -12.13 -0.07 -6.46 16 25 H 0.42 3.26 8.96 -40.82 -0.37 2.90 16 26 C 0.04 0.46 11.83 -16.58 -0.20 0.27 16 27 C -0.16 -2.28 9.05 -37.78 -0.34 -2.62 16 28 C -0.24 -4.09 5.54 -105.00 -0.58 -4.67 16 29 C 0.08 1.79 4.44 -3.83 -0.02 1.78 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.04 0.69 5.43 -51.93 -0.28 0.41 16 36 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.09 1.06 7.42 -51.93 -0.39 0.68 16 39 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 44 H 0.18 1.09 8.06 -52.48 -0.42 0.66 16 45 H 0.16 2.15 6.54 -52.49 -0.34 1.80 16 46 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 47 H 0.03 0.70 6.81 -51.93 -0.35 0.34 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -31.04 367.04 -13.33 -44.37 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.07 Total: 4.19 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -6.32 Total: -9.98 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.45 Total: -60.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.04 -13.33 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.518 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds