Wall clock time and date at job start Tue Mar 31 2020 14:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00628 * 2 1 4 4 H 1.48502 * 109.47349 * 270.00268 * 3 2 1 5 5 H 1.48507 * 109.46722 * 29.99731 * 3 2 1 6 6 H 1.48499 * 109.47235 * 149.99540 * 3 2 1 7 7 C 1.37877 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00118 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.49885 * 299.92041 * 9 7 2 11 11 C 1.53122 * 109.50336 * 59.99401 * 9 7 2 12 12 C 1.53121 * 109.15890 * 177.63465 * 11 9 7 13 13 C 1.53039 * 109.28062 * 302.34560 * 12 11 9 14 14 N 1.46850 * 109.51999 * 59.18275 * 13 12 11 15 15 C 1.38319 * 110.99960 * 174.15875 * 14 13 12 16 16 N 1.32990 * 120.83898 * 236.04220 * 15 14 13 17 17 C 1.32084 * 121.03161 * 179.97438 * 16 15 14 18 18 C 1.50704 * 118.64022 * 179.72171 * 17 16 15 19 19 C 1.53776 * 113.61398 * 219.13721 * 18 17 16 20 20 C 1.53953 * 87.02143 * 220.04977 * 19 18 17 21 21 C 1.53774 * 113.61225 * 121.53061 * 18 17 16 22 22 N 1.31550 * 122.71737 * 0.02562 * 17 16 15 23 23 C 1.33200 * 120.70890 * 359.97438 * 22 17 16 24 24 N 1.36779 * 134.29517 * 179.97438 * 23 22 17 25 25 H 0.96992 * 124.99186 * 0.02562 * 24 23 22 26 26 C 1.37100 * 110.02014 * 180.02562 * 24 23 22 27 27 C 1.34304 * 109.81520 * 0.02562 * 26 24 23 28 28 C 1.40301 * 120.83845 * 56.02253 * 15 14 13 29 29 C 1.46855 * 111.19714 * 298.25414 * 14 13 12 30 30 H 0.97004 * 119.99445 * 359.97438 * 1 2 3 31 31 H 1.09008 * 109.51992 * 57.73753 * 11 9 7 32 32 H 1.08992 * 109.52510 * 297.54156 * 11 9 7 33 33 H 1.08999 * 109.49820 * 182.40917 * 12 11 9 34 34 H 1.08998 * 109.50063 * 62.28905 * 12 11 9 35 35 H 1.09000 * 109.46358 * 299.16999 * 13 12 11 36 36 H 1.08994 * 109.45435 * 179.18602 * 13 12 11 37 37 H 1.09004 * 112.85042 * 350.33942 * 18 17 16 38 38 H 1.08999 * 113.61640 * 334.57290 * 19 18 17 39 39 H 1.09009 * 113.61087 * 105.47227 * 19 18 17 40 40 H 1.09006 * 113.53861 * 270.81503 * 20 19 18 41 41 H 1.08991 * 113.74404 * 139.94497 * 20 19 18 42 42 H 1.08999 * 113.61793 * 254.52597 * 21 18 17 43 43 H 1.09001 * 113.61953 * 25.35072 * 21 18 17 44 44 H 1.08008 * 125.09743 * 180.02562 * 26 24 23 45 45 H 1.07993 * 126.60132 * 179.97438 * 27 26 24 46 46 H 1.08997 * 109.46003 * 181.76139 * 29 14 13 47 47 H 1.08999 * 109.46127 * 301.72831 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6248 -2.5578 0.8908 11 6 0.3706 -2.5813 -1.2497 12 6 -0.3459 -3.9343 -1.2719 13 6 0.6935 -5.0571 -1.2390 14 7 1.5094 -4.9350 -0.0241 15 6 2.3726 -6.0083 0.1033 16 7 2.3658 -6.7623 1.1987 17 6 3.1880 -7.7884 1.3241 18 6 3.1389 -8.6028 2.5912 19 6 4.5233 -9.0469 3.0921 20 6 3.8740 -10.3980 3.4430 21 6 2.8310 -10.0908 2.3555 22 7 4.0521 -8.1253 0.3911 23 6 4.1344 -7.4309 -0.7425 24 7 4.9057 -7.5275 -1.8680 25 1 5.5876 -8.2004 -2.0189 26 6 4.5732 -6.5332 -2.7515 27 6 3.5933 -5.7740 -2.2349 28 6 3.2771 -6.3291 -0.9201 29 6 2.2440 -3.6635 -0.0034 30 1 -0.4849 0.8401 0.0004 31 1 0.9922 -2.4836 -2.1398 32 1 -0.3668 -1.7789 -1.2293 33 1 -0.9410 -4.0160 -2.1814 34 1 -0.9970 -4.0155 -0.4016 35 1 1.3357 -4.9834 -2.1166 36 1 0.1861 -6.0217 -1.2401 37 1 2.5206 -8.1461 3.3642 38 1 5.2722 -9.1142 2.3030 39 1 4.8722 -8.4901 3.9619 40 1 3.4577 -10.4325 4.4499 41 1 4.5020 -11.2591 3.2149 42 1 1.8157 -10.3757 2.6314 43 1 3.1150 -10.4439 1.3641 44 1 5.0308 -6.3830 -3.7183 45 1 3.1282 -4.9180 -2.7011 46 1 2.8627 -3.6162 0.8927 47 1 2.8788 -3.5965 -0.8868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166741368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:25 Heat of formation + Delta-G solvation = 95.158892 kcal Electronic energy + Delta-G solvation = -28076.192679 eV Core-core repulsion = 24452.496110 eV Total energy + Delta-G solvation = -3623.696570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.07738 -40.43929 -40.18044 -38.48598 -35.99990 -34.29136 -32.87389 -31.93008 -31.68765 -30.37113 -27.04646 -26.96686 -26.50680 -25.86949 -23.68660 -23.36063 -22.98502 -21.83207 -20.71854 -20.43831 -19.57803 -18.63737 -17.77564 -17.31894 -16.74212 -16.49813 -16.48769 -16.26919 -15.87227 -15.73840 -15.08613 -14.64021 -14.51401 -14.46203 -14.34550 -14.18913 -13.92255 -13.50358 -13.42881 -13.33519 -12.87234 -12.83427 -12.65380 -12.58121 -12.13440 -11.94035 -11.89447 -11.65020 -11.56116 -11.39098 -11.27012 -11.26146 -11.04457 -10.72234 -10.44816 -10.37228 -10.09694 -9.37129 -9.08008 -8.07108 -6.21535 -0.35014 0.25810 1.42675 1.44032 1.53955 1.58701 1.62786 2.32769 2.49081 2.68070 3.14671 3.20081 3.46729 3.61138 3.73231 3.81712 3.88393 3.99453 4.03781 4.12882 4.18100 4.22808 4.36059 4.51722 4.54569 4.61981 4.66249 4.77466 4.81856 4.86255 4.89052 4.92150 5.02144 5.06345 5.08494 5.12580 5.17692 5.23840 5.31486 5.34993 5.49056 5.59861 5.63871 5.67656 5.85264 5.87749 6.04918 6.17143 6.24370 6.39766 6.58760 6.88538 7.26156 7.46150 8.97770 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.014867 B = 0.003372 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.911183 B = 8302.580948 C = 8815.318153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.057 3.943 10 H -0.006 1.006 11 C -0.100 4.100 12 C -0.108 4.108 13 C 0.078 3.922 14 N -0.514 5.514 15 C 0.396 3.604 16 N -0.552 5.552 17 C 0.342 3.658 18 C -0.056 4.056 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.117 4.117 22 N -0.532 5.532 23 C 0.306 3.694 24 N -0.558 5.558 25 H 0.438 0.562 26 C 0.093 3.907 27 C -0.207 4.207 28 C -0.254 4.254 29 C 0.104 3.896 30 H 0.261 0.739 31 H 0.036 0.964 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.236 0.764 45 H 0.154 0.846 46 H 0.035 0.965 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.853 -20.339 -4.633 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.038 3.962 10 H 0.012 0.988 11 C -0.138 4.138 12 C -0.146 4.146 13 C -0.048 4.048 14 N -0.237 5.237 15 C 0.153 3.847 16 N -0.270 5.270 17 C 0.072 3.928 18 C -0.076 4.076 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.156 4.156 22 N -0.252 5.252 23 C 0.064 3.936 24 N -0.167 5.167 25 H 0.279 0.721 26 C -0.032 4.032 27 C -0.232 4.232 28 C -0.267 4.267 29 C -0.022 4.022 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.253 0.747 45 H 0.172 0.828 46 H 0.054 0.946 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.489 -20.857 -3.489 23.178 hybrid contribution 0.792 1.628 -1.105 2.121 sum 10.281 -19.229 -4.594 22.283 Atomic orbital electron populations 1.70030 1.07106 1.27172 1.50834 1.25676 0.95656 1.02176 0.94609 0.85609 0.78566 0.79375 0.78401 1.19629 1.20973 1.19696 1.21402 0.92873 0.91834 1.51357 0.93164 1.18576 0.92720 0.90547 0.94318 0.98830 1.21450 0.99168 0.95929 0.97288 1.21607 0.97082 0.94383 1.01515 1.22130 0.94834 0.99126 0.88759 1.58478 1.23705 1.00298 1.41241 1.19683 0.87798 0.89904 0.87312 1.68036 1.26228 1.07754 1.24962 1.23077 0.85687 0.89476 0.94558 1.21649 1.01329 0.94252 0.90373 1.22950 0.94411 0.97572 1.00938 1.22774 0.97238 0.96864 0.98979 1.22871 1.00590 0.91851 1.00245 1.67018 1.25199 1.32358 1.00671 1.18622 0.92859 0.92711 0.89432 1.41562 1.33744 1.29435 1.11958 0.72094 1.22740 0.96787 0.87381 0.96288 1.21884 1.03582 1.04341 0.93406 1.21524 1.02663 1.02241 1.00249 1.21962 0.95307 0.86358 0.98594 0.92937 0.94508 0.91746 0.89820 0.93376 0.92510 0.91280 0.87096 0.89830 0.90835 0.88491 0.89763 0.90448 0.90491 0.74739 0.82848 0.94592 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.89 11.35 21.45 0.24 -52.64 16 2 C 0.02 1.01 5.30 84.65 0.45 1.45 16 3 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.54 -30.07 8.57 25.60 0.22 -29.85 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 9 C 0.06 3.00 2.26 -11.49 -0.03 2.98 16 10 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C -0.10 -4.73 5.02 30.68 0.15 -4.58 16 12 C -0.11 -4.20 6.09 30.65 0.19 -4.01 16 13 C 0.08 2.82 5.05 86.33 0.44 3.26 16 14 N -0.51 -21.59 4.69 -700.93 -3.29 -24.88 16 15 C 0.40 15.62 5.73 133.40 0.76 16.39 16 16 N -0.55 -21.85 10.35 -185.02 -1.91 -23.76 16 17 C 0.34 11.32 6.88 138.74 0.95 12.27 16 18 C -0.06 -1.41 4.14 -11.02 -0.05 -1.46 16 19 C -0.12 -2.45 7.57 31.18 0.24 -2.21 16 20 C -0.12 -1.85 8.09 31.18 0.25 -1.60 16 21 C -0.12 -2.33 7.60 31.12 0.24 -2.09 16 22 N -0.53 -16.26 9.24 -185.68 -1.72 -17.97 16 23 C 0.31 8.94 8.48 133.96 1.14 10.07 16 24 N -0.56 -10.40 6.03 -192.30 -1.16 -11.56 16 25 H 0.44 4.98 8.96 -92.71 -0.83 4.14 16 26 C 0.09 1.53 11.83 82.97 0.98 2.51 16 27 C -0.21 -5.34 9.05 23.43 0.21 -5.12 16 28 C -0.25 -8.43 5.54 -20.11 -0.11 -8.54 16 29 C 0.10 4.77 4.44 86.32 0.38 5.16 16 30 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.06 3.43 6.15 -2.39 -0.01 3.42 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.06 1.88 5.43 -2.39 -0.01 1.87 16 36 H 0.07 2.35 8.10 -2.39 -0.02 2.33 16 37 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 38 H 0.08 1.85 7.42 -2.39 -0.02 1.83 16 39 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.66 7.95 -2.39 -0.02 1.64 16 44 H 0.24 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.15 3.99 6.54 -2.91 -0.02 3.97 16 46 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 47 H 0.04 1.73 6.81 -2.39 -0.02 1.72 16 Total: -1.00 -72.01 367.04 0.77 -71.25 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.16 Total: 19.18 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 6.42 Total: -5.38 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -7.84 Total: -130.82 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -72.01 0.77 -71.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.405 kcal (2) G-P(sol) polarization free energy of solvation -72.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds