Wall clock time and date at job start Tue Mar 31 2020 14:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48492 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47093 * 300.00663 * 3 2 1 6 6 H 1.48505 * 109.46647 * 60.00425 * 3 2 1 7 7 C 1.37876 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00528 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.53241 * 59.90160 * 9 7 2 11 11 C 1.53115 * 109.50291 * 299.81062 * 9 7 2 12 12 C 1.53129 * 109.16180 * 182.40231 * 11 9 7 13 13 C 1.53035 * 109.27644 * 57.65023 * 12 11 9 14 14 N 1.46850 * 109.52425 * 300.82058 * 13 12 11 15 15 C 1.38324 * 110.99991 * 185.83884 * 14 13 12 16 16 N 1.32988 * 120.83965 * 236.04539 * 15 14 13 17 17 C 1.32086 * 121.02938 * 180.25089 * 16 15 14 18 18 C 1.50699 * 118.63956 * 179.73830 * 17 16 15 19 19 C 1.53782 * 113.61510 * 239.73259 * 18 17 16 20 20 C 1.53781 * 87.08260 * 220.02009 * 19 18 17 21 21 C 1.53786 * 87.17350 * 25.39213 * 20 19 18 22 22 N 1.31547 * 122.71949 * 359.45814 * 17 16 15 23 23 C 1.33204 * 120.70489 * 0.28146 * 22 17 16 24 24 N 1.36783 * 134.29407 * 179.97438 * 23 22 17 25 25 H 0.96998 * 124.98881 * 0.02562 * 24 23 22 26 26 C 1.37094 * 110.02346 * 179.97438 * 24 23 22 27 27 C 1.34304 * 109.80992 * 0.02562 * 26 24 23 28 28 C 1.40312 * 120.83492 * 55.79337 * 15 14 13 29 29 C 1.46847 * 111.19452 * 61.74610 * 14 13 12 30 30 H 0.96996 * 120.00052 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.52051 * 302.30198 * 11 9 7 32 32 H 1.08994 * 109.52776 * 62.43228 * 11 9 7 33 33 H 1.08999 * 109.50412 * 177.59159 * 12 11 9 34 34 H 1.09002 * 109.49782 * 297.66756 * 12 11 9 35 35 H 1.08996 * 109.46004 * 180.80531 * 13 12 11 36 36 H 1.08999 * 109.46117 * 60.84062 * 13 12 11 37 37 H 1.09002 * 112.84923 * 10.93118 * 18 17 16 38 38 H 1.09001 * 113.61250 * 105.46827 * 19 18 17 39 39 H 1.08997 * 113.61225 * 334.56668 * 19 18 17 40 40 H 1.09002 * 113.61445 * 139.98212 * 20 19 18 41 41 H 1.09002 * 113.61408 * 270.79943 * 20 19 18 42 42 H 1.08993 * 113.61491 * 89.15923 * 21 20 19 43 43 H 1.09000 * 113.61138 * 220.06261 * 21 20 19 44 44 H 1.07996 * 125.09621 * 179.97438 * 26 24 23 45 45 H 1.08002 * 126.59467 * 179.97438 * 27 26 24 46 46 H 1.09001 * 109.46615 * 58.27300 * 29 14 13 47 47 H 1.09002 * 109.45896 * 178.23978 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6224 -2.5570 -0.8891 11 6 0.3746 -2.5834 1.2521 12 6 -0.3410 -3.9370 1.2747 13 6 0.6990 -5.0590 1.2371 14 7 1.5112 -4.9348 0.0200 15 6 2.3747 -6.0074 -0.1112 16 7 3.6855 -5.8168 -0.2302 17 6 4.5130 -6.8380 -0.3607 18 6 5.9877 -6.5597 -0.4975 19 6 6.5954 -7.0881 -1.8077 20 6 7.8206 -7.5075 -0.9784 21 6 6.8794 -7.5784 0.2357 22 7 4.1036 -8.0881 -0.3708 23 6 2.8096 -8.3810 -0.2527 24 7 2.0920 -9.5453 -0.2288 25 1 2.4722 -10.4345 -0.3035 26 6 0.7568 -9.2709 -0.0825 27 6 0.5705 -7.9429 -0.0090 28 6 1.8903 -7.3242 -0.1170 29 6 2.2449 -3.6629 -0.0011 30 1 -0.4850 0.8400 0.0004 31 1 0.9987 -2.4866 2.1405 32 1 -0.3626 -1.7808 1.2356 33 1 -0.9335 -4.0203 2.1858 34 1 -0.9953 -4.0171 0.4066 35 1 0.1922 -6.0240 1.2386 36 1 1.3436 -4.9862 2.1130 37 1 6.2442 -5.5220 -0.2845 38 1 6.8083 -6.3062 -2.5367 39 1 6.0486 -7.9288 -2.2347 40 1 8.2336 -8.4739 -1.2677 41 1 8.5801 -6.7298 -0.8974 42 1 6.4106 -8.5533 0.3684 43 1 7.3215 -7.1917 1.1540 44 1 -0.0277 -10.0115 -0.0346 45 1 -0.3732 -7.4306 0.1071 46 1 2.8823 -3.5966 0.8806 47 1 2.8610 -3.6140 -0.8990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166741369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:29 Heat of formation + Delta-G solvation = 108.098723 kcal Electronic energy + Delta-G solvation = -28052.283274 eV Core-core repulsion = 24429.147817 eV Total energy + Delta-G solvation = -3623.135456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81100 -39.39290 -38.82100 -37.20967 -34.33048 -32.58957 -31.26140 -31.03788 -29.78002 -29.12322 -26.05480 -25.60358 -24.98769 -24.51677 -22.33072 -22.01513 -21.22527 -20.68536 -19.48995 -18.73840 -18.59645 -17.00613 -16.42597 -15.87304 -15.49335 -15.37554 -15.02921 -14.85648 -14.33388 -14.00000 -13.85002 -13.49229 -13.26213 -13.03979 -12.94172 -12.56161 -12.49819 -12.41120 -12.33823 -11.89883 -11.73040 -11.01502 -10.95824 -10.78719 -10.72601 -10.64847 -10.57703 -10.35426 -10.22431 -10.15092 -9.88251 -9.51881 -9.17133 -8.94856 -8.88774 -8.75544 -8.56497 -8.28323 -7.55257 -5.97170 -4.02412 1.04823 1.60042 2.64631 2.69866 3.32123 3.40194 3.44898 3.78516 4.07616 4.22486 4.46195 4.56129 4.69538 4.73281 4.82666 4.87925 4.99368 5.14594 5.24843 5.33470 5.52663 5.59751 5.62250 5.65303 5.72468 5.74820 5.82977 5.88122 5.91319 5.95425 6.08518 6.15322 6.30945 6.36959 6.42438 6.49025 6.50864 6.58082 6.70968 6.87856 6.90629 6.95870 7.15863 7.28365 7.40585 7.65676 7.70598 7.77604 8.04171 8.14151 8.45809 8.59619 9.01312 9.61963 11.09352 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003940 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.745327 B = 7104.969361 C = 9183.407119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.050 3.950 10 H 0.034 0.966 11 C -0.114 4.114 12 C -0.119 4.119 13 C 0.067 3.933 14 N -0.465 5.465 15 C 0.423 3.577 16 N -0.570 5.570 17 C 0.378 3.622 18 C -0.045 4.045 19 C -0.121 4.121 20 C -0.139 4.139 21 C -0.122 4.122 22 N -0.560 5.560 23 C 0.331 3.669 24 N -0.575 5.575 25 H 0.417 0.583 26 C 0.030 3.970 27 C -0.154 4.154 28 C -0.236 4.236 29 C 0.077 3.923 30 H 0.259 0.741 31 H 0.033 0.967 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.178 0.822 45 H 0.154 0.846 46 H 0.041 0.959 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -19.818 1.016 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.152 4.152 12 C -0.157 4.157 13 C -0.058 4.058 14 N -0.180 5.180 15 C 0.177 3.823 16 N -0.293 5.293 17 C 0.107 3.893 18 C -0.065 4.065 19 C -0.160 4.160 20 C -0.177 4.177 21 C -0.161 4.161 22 N -0.284 5.284 23 C 0.092 3.908 24 N -0.183 5.183 25 H 0.255 0.745 26 C -0.094 4.094 27 C -0.181 4.181 28 C -0.248 4.248 29 C -0.048 4.048 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.085 0.915 44 H 0.195 0.805 45 H 0.171 0.829 46 H 0.059 0.941 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.578 -19.615 0.558 20.401 hybrid contribution -0.001 0.337 0.476 0.583 sum 5.577 -19.279 1.034 20.096 Atomic orbital electron populations 1.69894 1.05845 1.26244 1.50885 1.24922 0.94830 0.98975 0.95091 0.86552 0.80242 0.83828 0.77492 1.19744 1.21066 1.21120 1.21136 0.93029 0.90298 1.50433 0.92497 1.18771 0.92637 0.90583 0.94854 0.94753 1.21717 1.00207 0.94583 0.98707 1.21748 0.96906 0.96112 1.00932 1.22313 0.95375 1.00590 0.87569 1.58664 1.21186 1.02759 1.35389 1.19841 0.87516 0.88892 0.86078 1.68444 1.02151 1.35485 1.23246 1.22318 0.95944 0.81970 0.89073 1.21436 0.85368 1.00974 0.98730 1.22882 0.96598 1.01047 0.95441 1.22792 0.96453 1.01614 0.96831 1.22953 0.96249 0.99812 0.97055 1.66957 1.13598 1.23229 1.24595 1.18175 0.89171 0.86207 0.97296 1.41401 1.05797 1.06684 1.64389 0.74536 1.21825 0.83898 0.97334 1.06353 1.21641 0.96193 0.92263 1.07956 1.19988 0.95939 0.93174 1.15680 1.22366 0.95997 0.85145 1.01321 0.93122 0.94777 0.88704 0.92562 0.91664 0.90536 0.94225 0.86672 0.91124 0.89684 0.91377 0.90085 0.88880 0.91519 0.80535 0.82873 0.94107 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 11.36 55.43 0.63 -24.49 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.05 1.26 2.26 -91.70 -0.21 1.05 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.63 5.03 -26.60 -0.13 -2.77 16 12 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 13 C 0.07 1.17 5.24 -3.83 -0.02 1.15 16 14 N -0.47 -9.21 4.68 -172.90 -0.81 -10.02 16 15 C 0.42 8.03 6.42 -154.73 -0.99 7.04 16 16 N -0.57 -10.91 8.76 -9.83 -0.09 -11.00 16 17 C 0.38 6.30 6.88 -157.16 -1.08 5.22 16 18 C -0.04 -0.60 4.15 -90.86 -0.38 -0.98 16 19 C -0.12 -1.39 7.60 -25.92 -0.20 -1.59 16 20 C -0.14 -1.31 8.08 -25.92 -0.21 -1.52 16 21 C -0.12 -1.36 7.57 -25.82 -0.20 -1.55 16 22 N -0.56 -8.85 9.26 -10.04 -0.09 -8.94 16 23 C 0.33 5.03 8.48 -155.85 -1.32 3.71 16 24 N -0.57 -6.22 6.03 -12.14 -0.07 -6.29 16 25 H 0.42 3.19 8.96 -40.82 -0.37 2.83 16 26 C 0.03 0.29 11.83 -16.59 -0.20 0.09 16 27 C -0.15 -1.98 9.70 -37.79 -0.37 -2.34 16 28 C -0.24 -3.89 5.88 -105.00 -0.62 -4.51 16 29 C 0.08 1.72 3.89 -3.84 -0.01 1.71 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.15 5.06 -51.93 -0.26 0.89 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.12 1.57 8.14 -51.93 -0.42 1.14 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.04 7.99 -51.93 -0.41 0.62 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.10 7.40 -51.93 -0.38 0.72 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.15 1.77 7.03 -52.49 -0.37 1.41 16 46 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 47 H 0.07 1.74 7.74 -51.93 -0.40 1.34 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -31.13 367.91 -13.52 -44.66 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.13 Total: 4.57 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -6.48 Total: -10.31 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.43 Total: -60.73 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.13 -13.52 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.754 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds