Wall clock time and date at job start Tue Mar 31 2020 14:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00115 * 2 1 4 4 H 1.48492 * 109.47244 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47093 * 300.00663 * 3 2 1 6 6 H 1.48505 * 109.46647 * 60.00425 * 3 2 1 7 7 C 1.37876 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00528 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.53241 * 59.90160 * 9 7 2 11 11 C 1.53115 * 109.50291 * 299.81062 * 9 7 2 12 12 C 1.53129 * 109.16180 * 182.40231 * 11 9 7 13 13 C 1.53035 * 109.27644 * 57.65023 * 12 11 9 14 14 N 1.46850 * 109.52425 * 300.82058 * 13 12 11 15 15 C 1.38324 * 110.99991 * 185.83884 * 14 13 12 16 16 N 1.32988 * 120.83965 * 236.04539 * 15 14 13 17 17 C 1.32086 * 121.02938 * 180.25089 * 16 15 14 18 18 C 1.50699 * 118.63956 * 179.73830 * 17 16 15 19 19 C 1.53782 * 113.61510 * 239.73259 * 18 17 16 20 20 C 1.53781 * 87.08260 * 220.02009 * 19 18 17 21 21 C 1.53786 * 87.17350 * 25.39213 * 20 19 18 22 22 N 1.31547 * 122.71949 * 359.45814 * 17 16 15 23 23 C 1.33204 * 120.70489 * 0.28146 * 22 17 16 24 24 N 1.36783 * 134.29407 * 179.97438 * 23 22 17 25 25 H 0.96998 * 124.98881 * 0.02562 * 24 23 22 26 26 C 1.37094 * 110.02346 * 179.97438 * 24 23 22 27 27 C 1.34304 * 109.80992 * 0.02562 * 26 24 23 28 28 C 1.40312 * 120.83492 * 55.79337 * 15 14 13 29 29 C 1.46847 * 111.19452 * 61.74610 * 14 13 12 30 30 H 0.96996 * 120.00052 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.52051 * 302.30198 * 11 9 7 32 32 H 1.08994 * 109.52776 * 62.43228 * 11 9 7 33 33 H 1.08999 * 109.50412 * 177.59159 * 12 11 9 34 34 H 1.09002 * 109.49782 * 297.66756 * 12 11 9 35 35 H 1.08996 * 109.46004 * 180.80531 * 13 12 11 36 36 H 1.08999 * 109.46117 * 60.84062 * 13 12 11 37 37 H 1.09002 * 112.84923 * 10.93118 * 18 17 16 38 38 H 1.09001 * 113.61250 * 105.46827 * 19 18 17 39 39 H 1.08997 * 113.61225 * 334.56668 * 19 18 17 40 40 H 1.09002 * 113.61445 * 139.98212 * 20 19 18 41 41 H 1.09002 * 113.61408 * 270.79943 * 20 19 18 42 42 H 1.08993 * 113.61491 * 89.15923 * 21 20 19 43 43 H 1.09000 * 113.61138 * 220.06261 * 21 20 19 44 44 H 1.07996 * 125.09621 * 179.97438 * 26 24 23 45 45 H 1.08002 * 126.59467 * 179.97438 * 27 26 24 46 46 H 1.09001 * 109.46615 * 58.27300 * 29 14 13 47 47 H 1.09002 * 109.45896 * 178.23978 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6224 -2.5570 -0.8891 11 6 0.3746 -2.5834 1.2521 12 6 -0.3410 -3.9370 1.2747 13 6 0.6990 -5.0590 1.2371 14 7 1.5112 -4.9348 0.0200 15 6 2.3747 -6.0074 -0.1112 16 7 3.6855 -5.8168 -0.2302 17 6 4.5130 -6.8380 -0.3607 18 6 5.9877 -6.5597 -0.4975 19 6 6.5954 -7.0881 -1.8077 20 6 7.8206 -7.5075 -0.9784 21 6 6.8794 -7.5784 0.2357 22 7 4.1036 -8.0881 -0.3708 23 6 2.8096 -8.3810 -0.2527 24 7 2.0920 -9.5453 -0.2288 25 1 2.4722 -10.4345 -0.3035 26 6 0.7568 -9.2709 -0.0825 27 6 0.5705 -7.9429 -0.0090 28 6 1.8903 -7.3242 -0.1170 29 6 2.2449 -3.6629 -0.0011 30 1 -0.4850 0.8400 0.0004 31 1 0.9987 -2.4866 2.1405 32 1 -0.3626 -1.7808 1.2356 33 1 -0.9335 -4.0203 2.1858 34 1 -0.9953 -4.0171 0.4066 35 1 0.1922 -6.0240 1.2386 36 1 1.3436 -4.9862 2.1130 37 1 6.2442 -5.5220 -0.2845 38 1 6.8083 -6.3062 -2.5367 39 1 6.0486 -7.9288 -2.2347 40 1 8.2336 -8.4739 -1.2677 41 1 8.5801 -6.7298 -0.8974 42 1 6.4106 -8.5533 0.3684 43 1 7.3215 -7.1917 1.1540 44 1 -0.0277 -10.0115 -0.0346 45 1 -0.3732 -7.4306 0.1071 46 1 2.8823 -3.5966 0.8806 47 1 2.8610 -3.6140 -0.8990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166741369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:29 Heat of formation + Delta-G solvation = 91.410908 kcal Electronic energy + Delta-G solvation = -28053.006912 eV Core-core repulsion = 24429.147817 eV Total energy + Delta-G solvation = -3623.859094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.95304 -40.52547 -40.15473 -38.39160 -36.02630 -34.28392 -32.69721 -32.34621 -31.44110 -30.25844 -27.23667 -26.79410 -26.51220 -25.99204 -23.74345 -23.44059 -22.63055 -21.66253 -20.64041 -20.34548 -19.77379 -18.63958 -17.77337 -17.32551 -16.71223 -16.59678 -16.43176 -16.04537 -15.91604 -15.42757 -15.30241 -14.77158 -14.53758 -14.36464 -14.25659 -14.19606 -13.94611 -13.49357 -13.43125 -13.33642 -12.89838 -12.83962 -12.70171 -12.54359 -12.04094 -11.96804 -11.88355 -11.81591 -11.59294 -11.42372 -11.26528 -11.22506 -11.02111 -10.74687 -10.40259 -10.16932 -10.11701 -9.87209 -8.73426 -8.09588 -6.22822 -0.15100 0.36344 1.40317 1.42059 1.53998 1.70781 1.73433 2.38096 2.50856 2.83526 3.09637 3.17795 3.47435 3.72744 3.81062 3.84172 3.85853 4.01471 4.03810 4.11533 4.16438 4.24221 4.37746 4.48502 4.59733 4.66919 4.74372 4.78273 4.80049 4.84796 4.90494 4.92785 4.99880 5.05377 5.08248 5.11197 5.21473 5.25573 5.29269 5.39742 5.45738 5.59976 5.62422 5.67001 5.79990 5.97235 6.07725 6.15028 6.19001 6.38459 6.63915 6.86282 7.33553 7.44596 8.95778 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.003940 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.745327 B = 7104.969361 C = 9183.407119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.052 3.948 10 H 0.000 1.000 11 C -0.106 4.106 12 C -0.108 4.108 13 C 0.071 3.929 14 N -0.473 5.473 15 C 0.390 3.610 16 N -0.601 5.601 17 C 0.357 3.643 18 C -0.059 4.059 19 C -0.119 4.119 20 C -0.122 4.122 21 C -0.115 4.115 22 N -0.551 5.551 23 C 0.308 3.692 24 N -0.558 5.558 25 H 0.436 0.564 26 C 0.078 3.922 27 C -0.192 4.192 28 C -0.247 4.247 29 C 0.102 3.898 30 H 0.262 0.738 31 H 0.024 0.976 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.031 0.969 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.235 0.765 45 H 0.165 0.835 46 H 0.025 0.975 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.990 -22.788 1.478 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.033 3.967 10 H 0.018 0.982 11 C -0.145 4.145 12 C -0.146 4.146 13 C -0.053 4.053 14 N -0.189 5.189 15 C 0.146 3.854 16 N -0.325 5.325 17 C 0.086 3.914 18 C -0.079 4.079 19 C -0.158 4.158 20 C -0.159 4.159 21 C -0.153 4.153 22 N -0.274 5.274 23 C 0.067 3.933 24 N -0.167 5.167 25 H 0.277 0.723 26 C -0.047 4.047 27 C -0.217 4.217 28 C -0.259 4.259 29 C -0.024 4.024 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.050 0.950 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.251 0.749 45 H 0.182 0.818 46 H 0.043 0.957 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.398 -22.639 1.017 23.296 hybrid contribution 0.015 1.102 0.309 1.144 sum 5.412 -21.537 1.326 22.246 Atomic orbital electron populations 1.70013 1.06967 1.27135 1.51010 1.25651 0.95706 1.02085 0.94570 0.85570 0.78959 0.79738 0.77783 1.19568 1.20466 1.20226 1.21432 0.92837 0.92007 1.51169 0.93517 1.18662 0.92787 0.90923 0.94323 0.98191 1.21509 0.99227 0.96665 0.97062 1.21640 0.96937 0.93619 1.02405 1.22351 0.94750 1.01615 0.86613 1.58710 1.21551 1.01713 1.36878 1.19982 0.87662 0.89667 0.88137 1.68377 1.02961 1.37161 1.24013 1.22830 0.96852 0.81959 0.89747 1.21638 0.84189 1.01193 1.00890 1.22867 0.97431 1.00668 0.94803 1.22743 0.95607 1.02870 0.94658 1.22910 0.95918 0.98542 0.97958 1.67016 1.14116 1.22582 1.23697 1.18508 0.88984 0.87713 0.98055 1.41531 1.05973 1.06355 1.62794 0.72324 1.22707 0.83942 0.97274 1.00762 1.21871 0.95144 0.93567 1.11132 1.20299 0.98332 0.92250 1.15028 1.21820 0.94904 0.86321 0.99379 0.92887 0.95667 0.91420 0.89358 0.91923 0.87252 0.95025 0.87765 0.91030 0.90487 0.89649 0.88725 0.89489 0.90805 0.74870 0.81787 0.95685 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.06 11.36 21.45 0.24 -52.82 16 2 C 0.02 1.07 5.30 84.65 0.45 1.52 16 3 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.54 -30.96 8.56 25.60 0.22 -30.74 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 9 C 0.05 2.76 2.26 -11.49 -0.03 2.74 16 10 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 11 C -0.11 -5.12 5.03 30.68 0.15 -4.96 16 12 C -0.11 -4.02 6.09 30.65 0.19 -3.83 16 13 C 0.07 2.51 5.24 86.32 0.45 2.96 16 14 N -0.47 -19.47 4.68 -700.94 -3.28 -22.76 16 15 C 0.39 15.31 6.42 133.41 0.86 16.17 16 16 N -0.60 -24.32 8.76 -185.01 -1.62 -25.94 16 17 C 0.36 12.29 6.88 138.74 0.95 13.25 16 18 C -0.06 -1.62 4.15 -10.95 -0.05 -1.67 16 19 C -0.12 -2.71 7.60 31.12 0.24 -2.48 16 20 C -0.12 -2.09 8.08 31.12 0.25 -1.84 16 21 C -0.12 -2.47 7.57 31.18 0.24 -2.23 16 22 N -0.55 -17.25 9.26 -185.69 -1.72 -18.97 16 23 C 0.31 8.92 8.48 133.95 1.14 10.06 16 24 N -0.56 -9.94 6.03 -192.31 -1.16 -11.10 16 25 H 0.44 4.77 8.96 -92.71 -0.83 3.94 16 26 C 0.08 1.11 11.83 82.97 0.98 2.09 16 27 C -0.19 -4.35 9.70 23.43 0.23 -4.12 16 28 C -0.25 -7.95 5.88 -20.11 -0.12 -8.06 16 29 C 0.10 4.91 3.89 86.32 0.34 5.25 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 3.62 6.16 -2.39 -0.01 3.60 16 33 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 35 H 0.11 3.12 5.06 -2.39 -0.01 3.11 16 36 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.87 7.99 -2.39 -0.02 1.85 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.98 7.40 -2.39 -0.02 1.96 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.24 0.68 8.06 -2.91 -0.02 0.66 16 45 H 0.16 3.30 7.03 -2.91 -0.02 3.28 16 46 H 0.02 1.24 8.12 -2.39 -0.02 1.22 16 47 H 0.05 2.64 7.74 -2.39 -0.02 2.62 16 Total: -1.00 -73.13 367.91 1.14 -72.00 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.16 Total: 18.76 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 6.49 Total: -5.91 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -7.54 Total: -131.58 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -73.13 1.14 -72.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166741369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.406 kcal (2) G-P(sol) polarization free energy of solvation -73.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds