Wall clock time and date at job start Tue Mar 31 2020 15:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.45893 * 2 1 4 4 C 1.53036 * 109.46407 * 240.02401 * 2 1 3 5 5 C 1.53120 * 109.27826 * 180.81389 * 4 2 1 6 6 C 1.53120 * 109.15997 * 57.65333 * 5 4 2 7 7 C 1.53036 * 109.27754 * 302.34001 * 6 5 4 8 8 N 1.46843 * 109.45708 * 119.97324 * 2 1 3 9 9 C 1.38584 * 110.99736 * 305.85218 * 8 2 1 10 10 N 1.31733 * 119.80617 * 305.11975 * 9 8 2 11 11 C 1.34106 * 119.79966 * 179.77412 * 10 9 8 12 12 C 1.40383 * 120.86323 * 180.22668 * 11 10 9 13 13 C 1.36244 * 119.77026 * 180.27286 * 12 11 10 14 14 C 1.39254 * 120.91459 * 0.02562 * 13 12 11 15 15 C 1.36203 * 120.90444 * 0.02562 * 14 13 12 16 16 C 1.40485 * 119.75439 * 359.97438 * 15 14 13 17 17 N 1.33987 * 120.85366 * 179.97438 * 16 15 14 18 18 C 1.31864 * 119.78925 * 180.02562 * 17 16 15 19 19 N 1.38438 * 119.80683 * 180.02562 * 18 17 16 20 20 C 1.46488 * 120.00089 * 274.28816 * 19 18 17 21 21 C 1.36777 * 119.99855 * 94.28646 * 19 18 17 22 22 H 1.08004 * 120.00087 * 351.92280 * 21 19 18 23 23 C 1.38884 * 120.00089 * 171.92082 * 21 19 18 24 24 N 1.31516 * 119.99765 * 5.42533 * 23 21 19 25 25 Si 1.86801 * 120.00172 * 185.42003 * 23 21 19 26 26 H 1.48489 * 109.46986 * 90.00275 * 25 23 21 27 27 H 1.48502 * 109.47152 * 210.00333 * 25 23 21 28 28 H 1.48505 * 109.47097 * 329.99846 * 25 23 21 29 29 H 1.09005 * 109.47055 * 175.72256 * 1 2 3 30 30 H 1.08998 * 109.47149 * 295.71915 * 1 2 3 31 31 H 1.09001 * 109.47597 * 55.72297 * 1 2 3 32 32 H 1.09007 * 109.50036 * 300.75376 * 4 2 1 33 33 H 1.09002 * 109.50407 * 60.86982 * 4 2 1 34 34 H 1.09000 * 109.52330 * 177.55869 * 5 4 2 35 35 H 1.08996 * 109.52418 * 297.68273 * 5 4 2 36 36 H 1.09001 * 109.50356 * 62.29113 * 6 5 4 37 37 H 1.09007 * 109.49860 * 182.36594 * 6 5 4 38 38 H 1.09000 * 109.45707 * 179.19259 * 7 6 5 39 39 H 1.08990 * 109.46476 * 299.17883 * 7 6 5 40 40 H 1.07998 * 120.11822 * 0.25837 * 12 11 10 41 41 H 1.07990 * 119.54116 * 179.97438 * 13 12 11 42 42 H 1.08002 * 119.54912 * 179.97438 * 14 13 12 43 43 H 1.08007 * 120.12332 * 180.02562 * 15 14 13 44 44 H 1.09006 * 109.47167 * 3.51215 * 20 19 18 45 45 H 1.08997 * 109.47299 * 123.51353 * 20 19 18 46 46 H 1.09004 * 109.47015 * 243.51233 * 20 19 18 47 47 H 0.96999 * 119.99869 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7363 -1.2354 6 6 4.0546 -1.4191 0.0470 7 6 3.4863 -0.6778 1.2593 8 7 2.0191 -0.6917 1.1994 9 6 1.4700 -0.1433 2.3476 10 7 1.5905 1.1479 2.5788 11 6 1.0551 1.6793 3.6877 12 6 1.1661 3.0531 3.9539 13 6 0.6185 3.5684 5.0901 14 6 -0.0519 2.7504 5.9959 15 6 -0.1778 1.4131 5.7704 16 6 0.3742 0.8468 4.6092 17 7 0.2638 -0.4661 4.3657 18 6 0.7904 -0.9756 3.2693 19 7 0.6761 -2.3320 3.0171 20 6 1.6525 -3.2668 3.5815 21 6 -0.3485 -2.7992 2.2408 22 1 -1.1402 -2.1323 1.9329 23 6 -0.3709 -4.1313 1.8485 24 7 0.5332 -4.9678 2.3096 25 14 -1.6850 -4.7349 0.6661 26 1 -1.1993 -4.5902 -0.7296 27 1 -1.9803 -6.1639 0.9418 28 1 -2.9203 -3.9306 0.8464 29 1 -0.3633 -1.0248 -0.0767 30 1 -0.3633 0.4460 0.9258 31 1 -0.3634 0.5788 -0.8492 32 1 1.6657 -1.7447 -1.2575 33 1 1.6896 -0.1982 -2.1399 34 1 3.9380 -1.2866 -2.1017 35 1 3.9458 0.2867 -1.2681 36 1 3.7122 -2.4538 0.0597 37 1 5.1438 -1.3956 0.0832 38 1 3.8171 -1.1701 2.1738 39 1 3.8401 0.3531 1.2532 40 1 1.6838 3.6994 3.2606 41 1 0.7064 4.6257 5.2914 42 1 -0.4772 3.1821 6.8898 43 1 -0.7008 0.7904 6.4812 44 1 2.3514 -2.7226 4.2169 45 1 1.1337 -4.0202 4.1741 46 1 2.1991 -3.7531 2.7735 47 1 0.5174 -5.8983 2.0360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166802339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:21 Heat of formation + Delta-G solvation = 114.742825 kcal Electronic energy + Delta-G solvation = -29415.223289 eV Core-core repulsion = 25792.375943 eV Total energy + Delta-G solvation = -3622.847347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.93288 -39.00473 -37.11257 -35.47843 -34.08151 -32.75267 -32.12674 -31.31636 -29.61652 -28.75206 -26.83206 -26.18644 -24.84338 -24.16525 -22.48246 -21.80469 -21.68039 -21.13960 -19.41679 -18.07069 -17.62064 -17.16745 -16.22210 -15.45327 -15.20924 -15.11260 -14.43585 -14.29924 -14.11545 -13.88349 -13.66161 -13.48089 -13.28295 -13.08120 -13.03107 -12.18323 -11.93552 -11.77066 -11.64174 -11.50404 -11.43414 -11.34372 -11.14447 -10.91246 -10.87473 -10.84654 -10.63524 -10.53430 -10.47839 -10.24118 -10.17339 -10.09278 -10.03479 -8.90966 -8.63387 -8.21563 -8.08637 -7.86358 -7.20881 -5.89410 -3.24066 0.71906 1.13284 2.46177 3.20725 3.32165 3.36637 3.37897 3.90667 4.24250 4.54832 4.68134 4.72175 4.89231 5.04647 5.11376 5.12589 5.16160 5.22817 5.39890 5.46486 5.47609 5.62192 5.68289 5.72161 5.82062 5.87269 5.93228 6.00037 6.06050 6.10811 6.15680 6.17588 6.28846 6.31570 6.39662 6.43024 6.50355 6.57881 6.63656 6.65226 6.73937 6.79250 7.04226 7.41964 7.47043 7.56905 7.69961 7.80743 7.96105 8.20872 8.60900 9.00193 9.66833 10.01235 11.08440 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.005977 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.939283 B = 4683.648534 C = 6151.573636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.095 3.905 3 H 0.045 0.955 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.114 4.114 7 C 0.069 3.931 8 N -0.452 5.452 9 C 0.293 3.707 10 N -0.479 5.479 11 C 0.059 3.941 12 C -0.079 4.079 13 C -0.129 4.129 14 C -0.110 4.110 15 C -0.092 4.092 16 C 0.099 3.901 17 N -0.470 5.470 18 C 0.402 3.598 19 N -0.515 5.515 20 C 0.172 3.828 21 C -0.224 4.224 22 H 0.076 0.924 23 C 0.013 3.987 24 N -0.894 5.894 25 Si 0.913 3.087 26 H -0.282 1.282 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.131 0.869 44 H -0.010 1.010 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 11.565 -1.487 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.012 4.012 3 H 0.063 0.937 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.057 4.057 8 N -0.176 5.176 9 C 0.039 3.961 10 N -0.197 5.197 11 C -0.065 4.065 12 C -0.098 4.098 13 C -0.149 4.149 14 C -0.130 4.130 15 C -0.112 4.112 16 C -0.027 4.027 17 N -0.190 5.190 18 C 0.152 3.848 19 N -0.230 5.230 20 C 0.029 3.971 21 C -0.352 4.352 22 H 0.094 0.906 23 C -0.187 4.187 24 N -0.538 5.538 25 Si 0.742 3.258 26 H -0.209 1.209 27 H -0.214 1.214 28 H -0.204 1.204 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.009 0.991 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.308 10.912 -1.434 11.819 hybrid contribution -0.489 0.478 -0.539 0.871 sum 3.819 11.390 -1.974 12.174 Atomic orbital electron populations 1.21855 0.94394 1.03359 1.00570 1.21549 0.95458 0.95099 0.89137 0.93665 1.21638 0.95196 1.02109 0.95959 1.21557 0.96074 1.00131 0.97779 1.21567 0.99078 1.01035 0.93536 1.22005 0.85698 0.98800 0.99246 1.59829 1.07043 1.52023 0.98672 1.21938 0.93338 0.87701 0.93082 1.68646 1.19029 1.13748 1.18315 1.19273 1.00147 0.95009 0.92094 1.20647 0.99278 0.92592 0.97323 1.20727 0.99665 0.99789 0.94747 1.20791 0.99344 0.93430 0.99457 1.20788 0.99829 0.94988 0.95624 1.19613 0.97597 0.90182 0.95328 1.69137 1.16177 1.10570 1.23141 1.19107 0.90313 0.88636 0.86748 1.41166 1.30049 0.97185 1.54562 1.21280 0.89246 0.89923 0.96612 1.19148 0.97945 0.93532 1.24619 0.90598 1.24911 0.98494 0.96032 0.99227 1.70179 1.35123 1.04006 1.44467 0.86114 0.80702 0.78020 0.80990 1.20875 1.21366 1.20361 0.90467 0.93673 0.92835 0.90306 0.91899 0.92028 0.92696 0.90249 0.91831 0.91104 0.94547 0.85616 0.85903 0.85792 0.85115 0.99087 0.93200 0.91731 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.05 37.16 0.34 -2.24 16 2 C 0.10 1.63 2.18 -67.73 -0.15 1.48 16 3 H 0.05 0.78 7.92 -51.93 -0.41 0.37 16 4 C -0.11 -1.64 5.37 -26.65 -0.14 -1.78 16 5 C -0.12 -1.54 6.00 -26.61 -0.16 -1.69 16 6 C -0.11 -1.64 6.09 -26.65 -0.16 -1.80 16 7 C 0.07 1.17 5.33 -3.83 -0.02 1.15 16 8 N -0.45 -8.70 4.17 -165.20 -0.69 -9.39 16 9 C 0.29 6.14 3.63 -155.06 -0.56 5.58 16 10 N -0.48 -9.50 9.74 -9.86 -0.10 -9.60 16 11 C 0.06 1.12 6.59 -84.77 -0.56 0.56 16 12 C -0.08 -1.19 9.97 -39.49 -0.39 -1.59 16 13 C -0.13 -1.63 9.95 -39.92 -0.40 -2.03 16 14 C -0.11 -1.43 9.95 -39.94 -0.40 -1.83 16 15 C -0.09 -1.50 9.98 -39.47 -0.39 -1.89 16 16 C 0.10 1.97 6.59 -84.79 -0.56 1.41 16 17 N -0.47 -10.83 10.49 -9.87 -0.10 -10.93 16 18 C 0.40 9.41 5.96 -155.09 -0.92 8.48 16 19 N -0.51 -12.92 2.71 -122.01 -0.33 -13.25 16 20 C 0.17 4.24 8.95 59.84 0.54 4.78 16 21 C -0.22 -5.89 9.78 -15.11 -0.15 -6.03 16 22 H 0.08 2.03 7.84 -52.48 -0.41 1.62 16 23 C 0.01 0.33 5.46 -17.45 -0.10 0.23 16 24 N -0.89 -23.92 9.46 55.49 0.52 -23.40 16 25 Si 0.91 20.82 29.56 -169.99 -5.02 15.79 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.04 0.90 6.87 -51.93 -0.36 0.54 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.04 0.60 8.13 -51.93 -0.42 0.18 16 40 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 44 H -0.01 -0.22 7.90 -51.93 -0.41 -0.63 16 45 H 0.05 1.32 7.17 -51.93 -0.37 0.94 16 46 H 0.06 1.65 6.93 -51.93 -0.36 1.29 16 47 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -28.49 374.82 -11.63 -40.12 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.37 Total: 2.20 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -4.19 Total: 2.79 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -0.69 Total: -66.56 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.49 -11.63 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.866 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds