Wall clock time and date at job start Tue Mar 31 2020 15:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.45893 * 2 1 4 4 C 1.53036 * 109.46407 * 240.02401 * 2 1 3 5 5 C 1.53120 * 109.27826 * 180.81389 * 4 2 1 6 6 C 1.53120 * 109.15997 * 57.65333 * 5 4 2 7 7 C 1.53036 * 109.27754 * 302.34001 * 6 5 4 8 8 N 1.46843 * 109.45708 * 119.97324 * 2 1 3 9 9 C 1.38584 * 110.99736 * 305.85218 * 8 2 1 10 10 N 1.31733 * 119.80617 * 305.11975 * 9 8 2 11 11 C 1.34106 * 119.79966 * 179.77412 * 10 9 8 12 12 C 1.40383 * 120.86323 * 180.22668 * 11 10 9 13 13 C 1.36244 * 119.77026 * 180.27286 * 12 11 10 14 14 C 1.39254 * 120.91459 * 0.02562 * 13 12 11 15 15 C 1.36203 * 120.90444 * 0.02562 * 14 13 12 16 16 C 1.40485 * 119.75439 * 359.97438 * 15 14 13 17 17 N 1.33987 * 120.85366 * 179.97438 * 16 15 14 18 18 C 1.31864 * 119.78925 * 180.02562 * 17 16 15 19 19 N 1.38438 * 119.80683 * 180.02562 * 18 17 16 20 20 C 1.46488 * 120.00089 * 274.28816 * 19 18 17 21 21 C 1.36777 * 119.99855 * 94.28646 * 19 18 17 22 22 H 1.08004 * 120.00087 * 351.92280 * 21 19 18 23 23 C 1.38884 * 120.00089 * 171.92082 * 21 19 18 24 24 N 1.31516 * 119.99765 * 5.42533 * 23 21 19 25 25 Si 1.86801 * 120.00172 * 185.42003 * 23 21 19 26 26 H 1.48489 * 109.46986 * 90.00275 * 25 23 21 27 27 H 1.48502 * 109.47152 * 210.00333 * 25 23 21 28 28 H 1.48505 * 109.47097 * 329.99846 * 25 23 21 29 29 H 1.09005 * 109.47055 * 175.72256 * 1 2 3 30 30 H 1.08998 * 109.47149 * 295.71915 * 1 2 3 31 31 H 1.09001 * 109.47597 * 55.72297 * 1 2 3 32 32 H 1.09007 * 109.50036 * 300.75376 * 4 2 1 33 33 H 1.09002 * 109.50407 * 60.86982 * 4 2 1 34 34 H 1.09000 * 109.52330 * 177.55869 * 5 4 2 35 35 H 1.08996 * 109.52418 * 297.68273 * 5 4 2 36 36 H 1.09001 * 109.50356 * 62.29113 * 6 5 4 37 37 H 1.09007 * 109.49860 * 182.36594 * 6 5 4 38 38 H 1.09000 * 109.45707 * 179.19259 * 7 6 5 39 39 H 1.08990 * 109.46476 * 299.17883 * 7 6 5 40 40 H 1.07998 * 120.11822 * 0.25837 * 12 11 10 41 41 H 1.07990 * 119.54116 * 179.97438 * 13 12 11 42 42 H 1.08002 * 119.54912 * 179.97438 * 14 13 12 43 43 H 1.08007 * 120.12332 * 180.02562 * 15 14 13 44 44 H 1.09006 * 109.47167 * 3.51215 * 20 19 18 45 45 H 1.08997 * 109.47299 * 123.51353 * 20 19 18 46 46 H 1.09004 * 109.47015 * 243.51233 * 20 19 18 47 47 H 0.96999 * 119.99869 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7363 -1.2354 6 6 4.0546 -1.4191 0.0470 7 6 3.4863 -0.6778 1.2593 8 7 2.0191 -0.6917 1.1994 9 6 1.4700 -0.1433 2.3476 10 7 1.5905 1.1479 2.5788 11 6 1.0551 1.6793 3.6877 12 6 1.1661 3.0531 3.9539 13 6 0.6185 3.5684 5.0901 14 6 -0.0519 2.7504 5.9959 15 6 -0.1778 1.4131 5.7704 16 6 0.3742 0.8468 4.6092 17 7 0.2638 -0.4661 4.3657 18 6 0.7904 -0.9756 3.2693 19 7 0.6761 -2.3320 3.0171 20 6 1.6525 -3.2668 3.5815 21 6 -0.3485 -2.7992 2.2408 22 1 -1.1402 -2.1323 1.9329 23 6 -0.3709 -4.1313 1.8485 24 7 0.5332 -4.9678 2.3096 25 14 -1.6850 -4.7349 0.6661 26 1 -1.1993 -4.5902 -0.7296 27 1 -1.9803 -6.1639 0.9418 28 1 -2.9203 -3.9306 0.8464 29 1 -0.3633 -1.0248 -0.0767 30 1 -0.3633 0.4460 0.9258 31 1 -0.3634 0.5788 -0.8492 32 1 1.6657 -1.7447 -1.2575 33 1 1.6896 -0.1982 -2.1399 34 1 3.9380 -1.2866 -2.1017 35 1 3.9458 0.2867 -1.2681 36 1 3.7122 -2.4538 0.0597 37 1 5.1438 -1.3956 0.0832 38 1 3.8171 -1.1701 2.1738 39 1 3.8401 0.3531 1.2532 40 1 1.6838 3.6994 3.2606 41 1 0.7064 4.6257 5.2914 42 1 -0.4772 3.1821 6.8898 43 1 -0.7008 0.7904 6.4812 44 1 2.3514 -2.7226 4.2169 45 1 1.1337 -4.0202 4.1741 46 1 2.1991 -3.7531 2.7735 47 1 0.5174 -5.8983 2.0360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166802339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:20 Heat of formation + Delta-G solvation = 99.028707 kcal Electronic energy + Delta-G solvation = -29415.904705 eV Core-core repulsion = 25792.375943 eV Total energy + Delta-G solvation = -3623.528762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46135 -40.34797 -38.61429 -37.09660 -35.61942 -34.13069 -33.50617 -33.02349 -30.99357 -30.22895 -28.23554 -28.06983 -26.43918 -25.64050 -23.85256 -23.36484 -23.11699 -22.49680 -20.71603 -19.61754 -19.10834 -18.85960 -17.86041 -17.01204 -16.69494 -16.46098 -15.84264 -15.79323 -15.48984 -15.27931 -15.08163 -14.86491 -14.84087 -14.50661 -14.23667 -14.08912 -13.34014 -13.29892 -13.02517 -12.87566 -12.80294 -12.70852 -12.67878 -12.62472 -12.50513 -12.45819 -12.32044 -12.08685 -12.00805 -11.92690 -11.61511 -11.37550 -11.33952 -10.76421 -10.34002 -9.64914 -9.44000 -9.34242 -9.04948 -7.79840 -5.26337 -0.68215 -0.32858 1.00497 1.46246 1.47684 1.55175 1.88747 2.37963 2.52088 3.02728 3.07905 3.28004 3.31846 3.50516 3.80832 3.87010 3.88082 3.98038 4.08159 4.17468 4.21311 4.33907 4.36872 4.40045 4.45042 4.53195 4.60156 4.66309 4.69888 4.79256 4.80744 4.95630 5.00360 5.01854 5.10530 5.20237 5.23289 5.24675 5.27063 5.33492 5.42320 5.43131 5.53576 5.55995 5.74149 5.83078 6.07929 6.16445 6.36603 6.40440 6.95491 7.08875 7.80139 8.14587 9.19271 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.005977 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.939283 B = 4683.648534 C = 6151.573636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.097 3.903 3 H 0.050 0.950 4 C -0.107 4.107 5 C -0.110 4.110 6 C -0.109 4.109 7 C 0.072 3.928 8 N -0.470 5.470 9 C 0.283 3.717 10 N -0.472 5.472 11 C 0.052 3.948 12 C -0.093 4.093 13 C -0.092 4.092 14 C -0.084 4.084 15 C -0.109 4.109 16 C 0.061 3.939 17 N -0.490 5.490 18 C 0.385 3.615 19 N -0.540 5.540 20 C 0.203 3.797 21 C -0.235 4.235 22 H 0.058 0.942 23 C -0.031 4.031 24 N -0.930 5.930 25 Si 0.967 3.033 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.279 1.279 29 H 0.050 0.950 30 H 0.016 0.984 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.148 0.852 41 H 0.177 0.823 42 H 0.173 0.827 43 H 0.135 0.865 44 H -0.004 1.004 45 H 0.022 0.978 46 H 0.045 0.955 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.969 16.600 -1.346 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.010 4.010 3 H 0.068 0.932 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.055 4.055 8 N -0.195 5.195 9 C 0.032 3.968 10 N -0.190 5.190 11 C -0.074 4.074 12 C -0.113 4.113 13 C -0.112 4.112 14 C -0.104 4.104 15 C -0.129 4.129 16 C -0.064 4.064 17 N -0.209 5.209 18 C 0.136 3.864 19 N -0.260 5.260 20 C 0.059 3.941 21 C -0.364 4.364 22 H 0.076 0.924 23 C -0.226 4.226 24 N -0.577 5.577 25 Si 0.795 3.205 26 H -0.204 1.204 27 H -0.215 1.215 28 H -0.205 1.205 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.166 0.834 41 H 0.194 0.806 42 H 0.191 0.809 43 H 0.153 0.847 44 H 0.014 0.986 45 H 0.041 0.959 46 H 0.063 0.937 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.809 16.021 -1.288 16.777 hybrid contribution -0.675 -0.445 -0.202 0.833 sum 4.134 15.577 -1.490 16.185 Atomic orbital electron populations 1.21776 0.95373 1.01831 1.00259 1.21624 0.94647 0.95421 0.89332 0.93183 1.21632 0.96673 1.00555 0.95665 1.21537 0.94487 1.01240 0.97509 1.21550 1.00526 0.99264 0.93334 1.22035 0.84583 0.99198 0.99647 1.59784 1.08174 1.52733 0.98778 1.21670 0.93938 0.87801 0.93431 1.68731 1.18230 1.13139 1.18940 1.19896 0.99109 0.96836 0.91518 1.21009 1.00367 0.90728 0.99181 1.21412 0.95322 1.02213 0.92243 1.21398 0.96794 0.91656 1.00545 1.21051 1.00143 0.96898 0.94790 1.20131 0.99483 0.89143 0.97612 1.68958 1.16813 1.12931 1.22164 1.19389 0.90349 0.88515 0.88127 1.40986 1.30688 0.97940 1.56357 1.20768 0.88854 0.89201 0.95239 1.18985 0.99263 0.93730 1.24401 0.92361 1.25441 1.00442 0.95990 1.00743 1.70305 1.37062 1.03709 1.46601 0.85280 0.78637 0.77090 0.79484 1.20360 1.21540 1.20475 0.93127 0.96489 0.89828 0.92893 0.89196 0.89880 0.90935 0.92847 0.89129 0.93229 0.93833 0.83393 0.80582 0.80925 0.84696 0.98583 0.95927 0.93687 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 9.05 71.98 0.65 -4.30 16 2 C 0.10 3.32 2.18 44.94 0.10 3.42 16 3 H 0.05 1.66 7.92 -2.38 -0.02 1.64 16 4 C -0.11 -3.08 5.37 30.65 0.16 -2.92 16 5 C -0.11 -2.65 6.00 30.67 0.18 -2.47 16 6 C -0.11 -3.10 6.09 30.65 0.19 -2.91 16 7 C 0.07 2.48 5.33 86.32 0.46 2.94 16 8 N -0.47 -18.81 4.17 -676.58 -2.82 -21.64 16 9 C 0.28 12.31 3.63 134.01 0.49 12.79 16 10 N -0.47 -18.60 9.74 -185.10 -1.80 -20.40 16 11 C 0.05 1.88 6.59 40.16 0.26 2.14 16 12 C -0.09 -2.41 9.97 22.33 0.22 -2.19 16 13 C -0.09 -1.71 9.95 22.05 0.22 -1.49 16 14 C -0.08 -1.69 9.95 22.04 0.22 -1.47 16 15 C -0.11 -3.27 9.98 22.34 0.22 -3.05 16 16 C 0.06 2.43 6.59 40.20 0.26 2.69 16 17 N -0.49 -23.52 10.49 -185.13 -1.94 -25.46 16 18 C 0.38 19.09 5.96 134.02 0.80 19.88 16 19 N -0.54 -29.29 2.71 -539.92 -1.46 -30.75 16 20 C 0.20 10.90 8.95 127.77 1.14 12.04 16 21 C -0.24 -13.36 9.78 84.08 0.82 -12.54 16 22 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 23 C -0.03 -1.74 5.46 84.89 0.46 -1.28 16 24 N -0.93 -53.71 9.46 21.66 0.20 -53.51 16 25 Si 0.97 45.52 29.56 68.60 2.03 47.54 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 28 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 29 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.02 0.68 6.87 -2.39 -0.02 0.66 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 39 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 40 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.18 1.63 8.06 -2.92 -0.02 1.60 16 42 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 43 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 44 H 0.00 -0.22 7.90 -2.38 -0.02 -0.24 16 45 H 0.02 1.29 7.17 -2.39 -0.02 1.27 16 46 H 0.04 2.52 6.93 -2.38 -0.02 2.51 16 47 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -70.25 374.82 2.03 -68.22 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.95 Total: 14.69 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 6.87 Total: 21.30 kcal Atomic # 7 Polarization: -143.93 SS G_CDS: -7.82 Total: -151.75 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -70.25 2.03 -68.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166802339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.246 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds