Wall clock time and date at job start Tue Mar 31 2020 14:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38193 * 120.75420 * 2 1 4 4 N 1.32442 * 119.28929 * 180.27404 * 3 2 1 5 5 C 1.32532 * 120.93629 * 359.72903 * 4 3 2 6 6 N 1.38424 * 119.17835 * 180.02562 * 5 4 3 7 7 C 1.36990 * 120.00388 * 6.28595 * 6 5 4 8 8 H 1.08000 * 120.00274 * 217.43961 * 7 6 5 9 9 C 1.38830 * 119.99780 * 37.42841 * 7 6 5 10 10 N 1.31539 * 120.00122 * 28.07558 * 9 7 6 11 11 Si 1.86796 * 120.00036 * 208.07525 * 9 7 6 12 12 H 1.48500 * 109.47333 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47190 * 119.99991 * 11 9 7 14 14 H 1.48503 * 109.47394 * 239.99952 * 11 9 7 15 15 C 1.46507 * 120.00011 * 186.28882 * 6 5 4 16 16 C 1.50700 * 109.47226 * 96.40886 * 15 6 5 17 17 C 1.38229 * 119.99612 * 275.00375 * 16 15 6 18 18 C 1.38237 * 119.99610 * 179.76716 * 17 16 15 19 19 C 1.38238 * 120.00017 * 0.50796 * 18 17 16 20 20 C 1.38237 * 119.99926 * 359.74739 * 19 18 17 21 21 C 1.38229 * 119.99965 * 95.27990 * 16 15 6 22 22 N 1.32495 * 121.64567 * 359.97438 * 5 4 3 23 23 C 1.32894 * 120.61017 * 0.02562 * 22 5 4 24 24 N 1.38535 * 120.48117 * 180.02562 * 23 22 5 25 25 C 1.46500 * 120.00321 * 2.68935 * 24 23 22 26 26 C 1.53001 * 109.47090 * 274.85493 * 25 24 23 27 27 C 1.53006 * 109.47456 * 154.85716 * 25 24 23 28 28 H 1.09005 * 109.46678 * 270.26943 * 1 2 3 29 29 H 1.08993 * 109.47305 * 30.26731 * 1 2 3 30 30 H 1.09001 * 109.46891 * 150.27036 * 1 2 3 31 31 H 1.08000 * 120.35263 * 0.02562 * 3 2 1 32 32 H 0.97000 * 120.00476 * 184.97854 * 10 9 7 33 33 H 1.09005 * 109.46658 * 216.41169 * 15 6 5 34 34 H 1.09001 * 109.46712 * 336.40180 * 15 6 5 35 35 H 1.07997 * 120.00893 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.00330 * 180.22659 * 18 17 16 37 37 H 1.08006 * 119.99839 * 179.72226 * 19 18 17 38 38 H 1.07996 * 120.00066 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.00233 * 0.02562 * 21 16 15 40 40 H 0.97006 * 120.00058 * 182.69719 * 24 23 22 41 41 H 1.09000 * 109.47481 * 34.85320 * 25 24 23 42 42 H 1.09002 * 109.47132 * 293.62063 * 26 25 24 43 43 H 1.09000 * 109.47437 * 53.62110 * 26 25 24 44 44 H 1.08998 * 109.47290 * 173.61760 * 26 25 24 45 45 H 1.08995 * 109.47148 * 179.97438 * 27 25 24 46 46 H 1.08997 * 109.46818 * 300.00334 * 27 25 24 47 47 H 1.08999 * 109.46644 * 59.99645 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.1876 0.0000 4 7 3.5376 1.1537 -0.0055 5 6 4.1897 -0.0001 -0.0057 6 7 5.5739 0.0070 -0.0110 7 6 6.2534 1.1900 0.1139 8 1 7.1635 1.3515 -0.4446 9 6 5.7718 2.1813 0.9581 10 7 5.0515 1.8568 2.0099 11 14 6.1467 3.9760 0.6005 12 1 6.9685 4.0739 -0.6325 13 1 4.8751 4.7183 0.4074 14 1 6.8939 4.5626 1.7419 15 6 6.3123 -1.2507 -0.1502 16 6 6.6963 -1.4506 -1.5937 17 6 5.8019 -2.0322 -2.4726 18 6 6.1523 -2.2112 -3.7977 19 6 7.4011 -1.8182 -4.2416 20 6 8.2975 -1.2414 -3.3614 21 6 7.9451 -1.0576 -2.0375 22 7 3.5497 -1.1602 0.0002 23 6 2.2214 -1.2003 0.0059 24 7 1.5550 -2.4148 0.0126 25 6 2.3139 -3.6665 0.0729 26 6 2.7355 -4.0758 -1.3398 27 6 1.4396 -4.7643 0.6824 28 1 -0.3633 0.0048 1.0277 29 1 -0.3633 0.8875 -0.5179 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6918 2.1332 0.0004 32 1 4.6546 2.5510 2.5589 33 1 7.2124 -1.2133 0.4635 34 1 5.6839 -2.0790 0.1768 35 1 4.8280 -2.3437 -2.1248 36 1 5.4522 -2.6622 -4.4853 37 1 7.6765 -1.9622 -5.2760 38 1 9.2733 -0.9347 -3.7081 39 1 8.6457 -0.6077 -1.3497 40 1 0.5858 -2.4365 -0.0228 41 1 3.2011 -3.5242 0.6899 42 1 1.8506 -4.3278 -1.9244 43 1 3.2620 -3.2487 -1.8159 44 1 3.3941 -4.9426 -1.2856 45 1 2.0041 -5.6956 0.7268 46 1 1.1392 -4.4726 1.6887 47 1 0.5524 -4.9065 0.0653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166993521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:35 Heat of formation + Delta-G solvation = 95.868209 kcal Electronic energy + Delta-G solvation = -28698.649410 eV Core-core repulsion = 25074.983599 eV Total energy + Delta-G solvation = -3623.665811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.71056 -38.72153 -36.95378 -35.59755 -32.69088 -32.40610 -31.89098 -30.43451 -30.23428 -29.27341 -27.05561 -26.21627 -25.75545 -23.40859 -22.68140 -22.06236 -21.11713 -20.67215 -20.09795 -18.17923 -16.81264 -16.26064 -15.89100 -15.11519 -14.92627 -14.59420 -14.41535 -14.37163 -14.11211 -13.83069 -13.36475 -13.31102 -13.03852 -12.91251 -12.79983 -12.59044 -12.22799 -12.15243 -12.01231 -11.80475 -11.68653 -11.55239 -11.31439 -11.20190 -10.89811 -10.85422 -10.68383 -10.52883 -10.36849 -10.18512 -9.98169 -9.43296 -9.09726 -8.47174 -8.43430 -8.26583 -7.62099 -7.41430 -6.60467 -6.07191 -3.73983 1.81135 1.87504 2.61528 2.87985 3.34420 3.44101 3.45366 3.75275 4.11808 4.39746 4.79320 5.07504 5.18083 5.26607 5.30018 5.32684 5.39069 5.42292 5.50163 5.64024 5.71113 5.72824 5.75063 5.86747 5.90306 5.93269 6.00262 6.06271 6.08556 6.12983 6.17643 6.21549 6.30710 6.40748 6.44833 6.51240 6.62424 6.63554 6.67032 6.91619 6.94830 6.99461 7.24236 7.47677 7.48814 7.56094 7.73200 7.97746 8.24844 8.69156 8.99923 9.23999 9.68469 10.19877 10.86049 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008244 B = 0.006711 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.555856 B = 4171.028644 C = 6684.559243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.374 4.374 3 C 0.208 3.792 4 N -0.547 5.547 5 C 0.578 3.422 6 N -0.400 5.400 7 C -0.336 4.336 8 H 0.084 0.916 9 C 0.091 3.909 10 N -0.822 5.822 11 Si 0.903 3.097 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.290 1.290 15 C 0.160 3.840 16 C -0.079 4.079 17 C -0.102 4.102 18 C -0.130 4.130 19 C -0.131 4.131 20 C -0.129 4.129 21 C -0.102 4.102 22 N -0.640 5.640 23 C 0.470 3.530 24 N -0.723 5.723 25 C 0.152 3.848 26 C -0.161 4.161 27 C -0.159 4.159 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.134 0.866 32 H 0.264 0.736 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.399 0.601 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 -10.072 -5.864 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.390 4.390 3 C 0.036 3.964 4 N -0.270 5.270 5 C 0.225 3.775 6 N -0.096 5.096 7 C -0.463 4.463 8 H 0.101 0.899 9 C -0.121 4.121 10 N -0.453 5.453 11 Si 0.730 3.270 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.217 1.217 15 C 0.035 3.965 16 C -0.081 4.081 17 C -0.120 4.120 18 C -0.148 4.148 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.121 4.121 22 N -0.375 5.375 23 C 0.224 3.776 24 N -0.360 5.360 25 C 0.047 3.953 26 C -0.220 4.220 27 C -0.217 4.217 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.151 0.849 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.235 0.765 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.516 -10.117 -5.609 11.838 hybrid contribution -1.370 1.043 -0.138 1.727 sum -3.886 -9.074 -5.747 11.422 Atomic orbital electron populations 1.20060 0.92221 1.00254 0.99795 1.20046 0.96150 0.93904 1.28879 1.22211 0.89661 0.95762 0.88797 1.68005 1.07410 1.28661 1.22918 1.18745 0.86620 0.82716 0.89381 1.41629 0.98543 1.05005 1.64420 1.18979 1.10396 0.92038 1.24898 0.89875 1.24936 0.95689 0.99623 0.91839 1.70038 1.30262 1.34287 1.10732 0.86331 0.78102 0.84580 0.78025 1.19651 1.20419 1.21681 1.20343 0.96816 0.88830 0.90489 1.20546 0.93547 0.96294 0.97713 1.21252 0.99439 0.98306 0.93006 1.21056 0.96526 1.01352 0.95886 1.20994 0.94473 1.00502 0.98990 1.21041 0.99337 1.00429 0.93878 1.21112 0.96601 0.98751 0.95649 1.67125 1.07155 1.29785 1.33436 1.17710 0.88023 0.84770 0.87136 1.44382 1.07487 1.02168 1.82008 1.20686 0.95269 0.83097 0.96260 1.22253 1.00757 1.01438 0.97516 1.22078 1.00015 0.98621 1.00981 0.93835 0.93117 0.94055 0.84887 0.92563 0.91044 0.89839 0.85672 0.87004 0.87014 0.86776 0.86165 0.76511 0.89632 0.93523 0.91671 0.92577 0.91542 0.92349 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 9.66 36.00 0.35 -0.62 16 2 C -0.37 -7.36 5.93 -104.10 -0.62 -7.98 16 3 C 0.21 4.62 10.99 -17.31 -0.19 4.43 16 4 N -0.55 -14.17 7.23 -13.98 -0.10 -14.27 16 5 C 0.58 14.65 7.41 -322.73 -2.39 12.26 16 6 N -0.40 -10.04 2.63 -118.34 -0.31 -10.35 16 7 C -0.34 -8.97 9.19 -15.03 -0.14 -9.11 16 8 H 0.08 2.18 7.97 -52.49 -0.42 1.76 16 9 C 0.09 2.45 3.90 -17.46 -0.07 2.39 16 10 N -0.82 -23.22 11.98 55.49 0.66 -22.55 16 11 Si 0.90 21.38 29.64 -169.99 -5.04 16.34 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.16 3.38 5.65 -5.19 -0.03 3.35 16 16 C -0.08 -1.52 5.41 -104.63 -0.57 -2.08 16 17 C -0.10 -1.84 9.72 -39.58 -0.38 -2.22 16 18 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 19 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 20 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 21 C -0.10 -1.79 9.68 -39.59 -0.38 -2.17 16 22 N -0.64 -14.31 7.91 -13.14 -0.10 -14.41 16 23 C 0.47 9.38 7.47 -154.85 -1.16 8.22 16 24 N -0.72 -11.18 5.14 -53.79 -0.28 -11.46 16 25 C 0.15 2.10 3.19 -67.93 -0.22 1.88 16 26 C -0.16 -2.09 9.50 37.16 0.35 -1.74 16 27 C -0.16 -1.66 9.38 37.16 0.35 -1.31 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.04 0.53 6.63 -51.93 -0.34 0.19 16 31 H 0.13 2.62 8.06 -52.49 -0.42 2.19 16 32 H 0.26 7.21 8.32 -40.82 -0.34 6.87 16 33 H 0.07 1.46 8.00 -51.93 -0.42 1.05 16 34 H 0.08 1.75 7.04 -51.93 -0.37 1.38 16 35 H 0.13 2.32 5.92 -52.49 -0.31 2.01 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 39 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.40 5.27 6.70 -40.82 -0.27 5.00 16 41 H 0.09 1.41 7.60 -51.93 -0.39 1.01 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.02 6.01 -51.93 -0.31 0.71 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -30.63 384.50 -12.70 -43.33 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.04 Total: 9.46 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -6.28 Total: -1.87 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -0.13 Total: -73.05 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.04 Total: 16.34 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.63 -12.70 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166993521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.198 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds